data_3G48
#
_model_server_result.job_id            6fdlGSn-YUsxiSFg4aUpyg 
_model_server_result.datetime_utc      '2024-12-26 20:53:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3g48 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1001}' 
#
_entry.id    3G48 
#
_exptl.entry_id    3G48 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3G48 
_cell.length_a            39.359 
_cell.length_b            67.564 
_cell.length_c            74.642 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3G48 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
B,E,F,H 1 1 
A,C,D,G 1 2 
A,B,C,D,E,F,G,H 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x+1/2,-y+1,z+1/2 -1 0 0 0 -1 0 0 0 1 19.6795 67.564 37.321 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 125 n n 
C1 C2 GOL sing 126 n n 
C1 H11 GOL sing 127 n n 
C1 H12 GOL sing 128 n n 
O1 HO1 GOL sing 129 n n 
C2 O2 GOL sing 130 n n 
C2 C3 GOL sing 131 n n 
C2 H2 GOL sing 132 n n 
O2 HO2 GOL sing 133 n n 
C3 O3 GOL sing 134 n n 
C3 H31 GOL sing 135 n n 
C3 H32 GOL sing 136 n n 
O3 HO3 GOL sing 137 n n 
#
_atom_sites.entry_id                     3G48 
_atom_sites.fract_transf_matrix[1][1]    0.025407 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014801 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013397 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 2001 2001 EDO EDO . 
D 3 SO4 A 1 3001 3001 SO4 SO4 . 
E 4 GOL B 1 1001 1001 GOL GOL . 
F 4 GOL B 1 1002 1002 GOL GOL . 
G 5 HOH A 1 110 110 HOH HOH . 
G 5 HOH A 2 111 111 HOH HOH . 
G 5 HOH A 3 112 3 HOH HOH . 
G 5 HOH A 4 113 113 HOH HOH . 
G 5 HOH A 5 114 114 HOH HOH . 
G 5 HOH A 6 115 6 HOH HOH . 
G 5 HOH A 7 116 7 HOH HOH . 
G 5 HOH A 8 117 117 HOH HOH . 
G 5 HOH A 9 118 8 HOH HOH . 
G 5 HOH A 10 119 119 HOH HOH . 
G 5 HOH A 11 120 120 HOH HOH . 
G 5 HOH A 12 121 12 HOH HOH . 
G 5 HOH A 13 122 13 HOH HOH . 
G 5 HOH A 14 123 14 HOH HOH . 
G 5 HOH A 15 124 18 HOH HOH . 
G 5 HOH A 16 125 125 HOH HOH . 
G 5 HOH A 17 126 49 HOH HOH . 
G 5 HOH A 18 127 50 HOH HOH . 
G 5 HOH A 19 128 51 HOH HOH . 
G 5 HOH A 20 129 52 HOH HOH . 
G 5 HOH A 21 130 53 HOH HOH . 
G 5 HOH A 22 131 54 HOH HOH . 
G 5 HOH A 23 132 55 HOH HOH . 
G 5 HOH A 24 133 133 HOH HOH . 
G 5 HOH A 25 134 134 HOH HOH . 
G 5 HOH A 26 135 56 HOH HOH . 
G 5 HOH A 27 136 57 HOH HOH . 
G 5 HOH A 28 137 60 HOH HOH . 
G 5 HOH A 29 138 138 HOH HOH . 
G 5 HOH A 30 139 61 HOH HOH . 
G 5 HOH A 31 140 63 HOH HOH . 
G 5 HOH A 32 141 115 HOH HOH . 
G 5 HOH A 33 142 66 HOH HOH . 
G 5 HOH A 34 143 67 HOH HOH . 
G 5 HOH A 35 144 72 HOH HOH . 
G 5 HOH A 36 145 122 HOH HOH . 
G 5 HOH A 37 146 75 HOH HOH . 
G 5 HOH A 38 147 76 HOH HOH . 
G 5 HOH A 39 148 79 HOH HOH . 
G 5 HOH A 40 150 83 HOH HOH . 
G 5 HOH A 41 151 84 HOH HOH . 
G 5 HOH A 42 152 85 HOH HOH . 
G 5 HOH A 43 153 86 HOH HOH . 
G 5 HOH A 44 154 88 HOH HOH . 
G 5 HOH A 45 155 89 HOH HOH . 
G 5 HOH A 46 156 92 HOH HOH . 
G 5 HOH A 47 157 93 HOH HOH . 
G 5 HOH A 48 158 95 HOH HOH . 
G 5 HOH A 49 159 96 HOH HOH . 
G 5 HOH A 50 160 98 HOH HOH . 
G 5 HOH A 51 161 103 HOH HOH . 
G 5 HOH A 52 162 106 HOH HOH . 
G 5 HOH A 53 163 107 HOH HOH . 
G 5 HOH A 54 164 109 HOH HOH . 
G 5 HOH A 55 206 206 HOH HOH . 
G 5 HOH A 56 207 207 HOH HOH . 
G 5 HOH A 57 210 210 HOH HOH . 
G 5 HOH A 58 215 215 HOH HOH . 
G 5 HOH A 59 217 217 HOH HOH . 
G 5 HOH A 60 220 220 HOH HOH . 
G 5 HOH A 61 222 222 HOH HOH . 
G 5 HOH A 62 226 226 HOH HOH . 
G 5 HOH A 63 230 230 HOH HOH . 
G 5 HOH A 64 231 231 HOH HOH . 
G 5 HOH A 65 232 232 HOH HOH . 
G 5 HOH A 66 233 233 HOH HOH . 
G 5 HOH A 67 234 234 HOH HOH . 
G 5 HOH A 68 237 237 HOH HOH . 
G 5 HOH A 69 238 238 HOH HOH . 
G 5 HOH A 70 239 239 HOH HOH . 
G 5 HOH A 71 241 241 HOH HOH . 
G 5 HOH A 72 242 242 HOH HOH . 
G 5 HOH A 73 245 245 HOH HOH . 
G 5 HOH A 74 246 246 HOH HOH . 
G 5 HOH A 75 248 248 HOH HOH . 
G 5 HOH A 76 249 249 HOH HOH . 
G 5 HOH A 77 250 250 HOH HOH . 
G 5 HOH A 78 251 251 HOH HOH . 
G 5 HOH A 79 252 252 HOH HOH . 
G 5 HOH A 80 253 253 HOH HOH . 
G 5 HOH A 81 254 254 HOH HOH . 
G 5 HOH A 82 258 258 HOH HOH . 
G 5 HOH A 83 281 281 HOH HOH . 
G 5 HOH A 84 284 284 HOH HOH . 
G 5 HOH A 85 285 285 HOH HOH . 
G 5 HOH A 86 286 286 HOH HOH . 
G 5 HOH A 87 290 290 HOH HOH . 
G 5 HOH A 88 291 291 HOH HOH . 
G 5 HOH A 89 293 293 HOH HOH . 
G 5 HOH A 90 294 294 HOH HOH . 
G 5 HOH A 91 297 297 HOH HOH . 
G 5 HOH A 92 299 299 HOH HOH . 
G 5 HOH A 93 301 301 HOH HOH . 
G 5 HOH A 94 302 302 HOH HOH . 
G 5 HOH A 95 303 303 HOH HOH . 
G 5 HOH A 96 305 305 HOH HOH . 
G 5 HOH A 97 307 307 HOH HOH . 
G 5 HOH A 98 308 308 HOH HOH . 
G 5 HOH A 99 311 311 HOH HOH . 
G 5 HOH A 100 312 312 HOH HOH . 
G 5 HOH A 101 313 313 HOH HOH . 
G 5 HOH A 102 314 314 HOH HOH . 
G 5 HOH A 103 316 316 HOH HOH . 
G 5 HOH A 104 319 319 HOH HOH . 
G 5 HOH A 105 320 320 HOH HOH . 
G 5 HOH A 106 321 321 HOH HOH . 
G 5 HOH A 107 322 322 HOH HOH . 
G 5 HOH A 108 323 323 HOH HOH . 
G 5 HOH A 109 324 324 HOH HOH . 
G 5 HOH A 110 326 326 HOH HOH . 
G 5 HOH A 111 327 327 HOH HOH . 
G 5 HOH A 112 329 329 HOH HOH . 
G 5 HOH A 113 330 330 HOH HOH . 
G 5 HOH A 114 331 331 HOH HOH . 
G 5 HOH A 115 332 332 HOH HOH . 
G 5 HOH A 116 340 340 HOH HOH . 
G 5 HOH A 117 349 349 HOH HOH . 
G 5 HOH A 118 350 350 HOH HOH . 
G 5 HOH A 119 351 351 HOH HOH . 
G 5 HOH A 120 358 358 HOH HOH . 
G 5 HOH A 121 360 360 HOH HOH . 
G 5 HOH A 122 361 361 HOH HOH . 
G 5 HOH A 123 364 364 HOH HOH . 
G 5 HOH A 124 366 366 HOH HOH . 
G 5 HOH A 125 367 367 HOH HOH . 
G 5 HOH A 126 372 372 HOH HOH . 
G 5 HOH A 127 374 374 HOH HOH . 
G 5 HOH A 128 375 375 HOH HOH . 
G 5 HOH A 129 376 376 HOH HOH . 
G 5 HOH A 130 377 377 HOH HOH . 
G 5 HOH A 131 378 378 HOH HOH . 
G 5 HOH A 132 380 380 HOH HOH . 
G 5 HOH A 133 381 381 HOH HOH . 
G 5 HOH A 134 382 382 HOH HOH . 
H 5 HOH B 1 110 2 HOH HOH . 
H 5 HOH B 2 111 4 HOH HOH . 
H 5 HOH B 3 112 112 HOH HOH . 
H 5 HOH B 4 113 9 HOH HOH . 
H 5 HOH B 5 114 10 HOH HOH . 
H 5 HOH B 6 116 15 HOH HOH . 
H 5 HOH B 7 117 16 HOH HOH . 
H 5 HOH B 8 118 118 HOH HOH . 
H 5 HOH B 9 119 47 HOH HOH . 
H 5 HOH B 10 120 48 HOH HOH . 
H 5 HOH B 11 121 121 HOH HOH . 
H 5 HOH B 12 123 123 HOH HOH . 
H 5 HOH B 13 124 58 HOH HOH . 
H 5 HOH B 14 125 59 HOH HOH . 
H 5 HOH B 15 126 62 HOH HOH . 
H 5 HOH B 16 127 127 HOH HOH . 
H 5 HOH B 17 128 65 HOH HOH . 
H 5 HOH B 18 129 129 HOH HOH . 
H 5 HOH B 19 130 130 HOH HOH . 
H 5 HOH B 20 131 131 HOH HOH . 
H 5 HOH B 21 132 132 HOH HOH . 
H 5 HOH B 22 133 69 HOH HOH . 
H 5 HOH B 23 134 73 HOH HOH . 
H 5 HOH B 24 135 135 HOH HOH . 
H 5 HOH B 25 136 77 HOH HOH . 
H 5 HOH B 26 137 78 HOH HOH . 
H 5 HOH B 27 138 80 HOH HOH . 
H 5 HOH B 28 139 139 HOH HOH . 
H 5 HOH B 29 140 140 HOH HOH . 
H 5 HOH B 30 141 64 HOH HOH . 
H 5 HOH B 31 142 90 HOH HOH . 
H 5 HOH B 32 143 91 HOH HOH . 
H 5 HOH B 33 144 102 HOH HOH . 
H 5 HOH B 34 145 74 HOH HOH . 
H 5 HOH B 35 146 105 HOH HOH . 
H 5 HOH B 36 147 81 HOH HOH . 
H 5 HOH B 37 148 104 HOH HOH . 
H 5 HOH B 38 149 82 HOH HOH . 
H 5 HOH B 39 202 202 HOH HOH . 
H 5 HOH B 40 203 203 HOH HOH . 
H 5 HOH B 41 208 208 HOH HOH . 
H 5 HOH B 42 209 209 HOH HOH . 
H 5 HOH B 43 216 216 HOH HOH . 
H 5 HOH B 44 221 221 HOH HOH . 
H 5 HOH B 45 223 223 HOH HOH . 
H 5 HOH B 46 225 225 HOH HOH . 
H 5 HOH B 47 227 227 HOH HOH . 
H 5 HOH B 48 228 228 HOH HOH . 
H 5 HOH B 49 236 236 HOH HOH . 
H 5 HOH B 50 240 240 HOH HOH . 
H 5 HOH B 51 247 247 HOH HOH . 
H 5 HOH B 52 255 255 HOH HOH . 
H 5 HOH B 53 256 256 HOH HOH . 
H 5 HOH B 54 257 257 HOH HOH . 
H 5 HOH B 55 259 259 HOH HOH . 
H 5 HOH B 56 260 260 HOH HOH . 
H 5 HOH B 57 262 262 HOH HOH . 
H 5 HOH B 58 263 263 HOH HOH . 
H 5 HOH B 59 264 264 HOH HOH . 
H 5 HOH B 60 265 265 HOH HOH . 
H 5 HOH B 61 266 266 HOH HOH . 
H 5 HOH B 62 267 267 HOH HOH . 
H 5 HOH B 63 268 268 HOH HOH . 
H 5 HOH B 64 271 271 HOH HOH . 
H 5 HOH B 65 272 272 HOH HOH . 
H 5 HOH B 66 273 273 HOH HOH . 
H 5 HOH B 67 275 275 HOH HOH . 
H 5 HOH B 68 276 276 HOH HOH . 
H 5 HOH B 69 277 277 HOH HOH . 
H 5 HOH B 70 278 278 HOH HOH . 
H 5 HOH B 71 279 279 HOH HOH . 
H 5 HOH B 72 280 280 HOH HOH . 
H 5 HOH B 73 282 282 HOH HOH . 
H 5 HOH B 74 283 283 HOH HOH . 
H 5 HOH B 75 287 287 HOH HOH . 
H 5 HOH B 76 288 288 HOH HOH . 
H 5 HOH B 77 289 289 HOH HOH . 
H 5 HOH B 78 292 292 HOH HOH . 
H 5 HOH B 79 295 295 HOH HOH . 
H 5 HOH B 80 296 296 HOH HOH . 
H 5 HOH B 81 298 298 HOH HOH . 
H 5 HOH B 82 300 300 HOH HOH . 
H 5 HOH B 83 304 304 HOH HOH . 
H 5 HOH B 84 306 306 HOH HOH . 
H 5 HOH B 85 309 309 HOH HOH . 
H 5 HOH B 86 310 310 HOH HOH . 
H 5 HOH B 87 315 315 HOH HOH . 
H 5 HOH B 88 317 317 HOH HOH . 
H 5 HOH B 89 318 318 HOH HOH . 
H 5 HOH B 90 325 325 HOH HOH . 
H 5 HOH B 91 328 328 HOH HOH . 
H 5 HOH B 92 333 333 HOH HOH . 
H 5 HOH B 93 335 335 HOH HOH . 
H 5 HOH B 94 336 336 HOH HOH . 
H 5 HOH B 95 337 337 HOH HOH . 
H 5 HOH B 96 338 338 HOH HOH . 
H 5 HOH B 97 339 339 HOH HOH . 
H 5 HOH B 98 341 341 HOH HOH . 
H 5 HOH B 99 342 342 HOH HOH . 
H 5 HOH B 100 343 343 HOH HOH . 
H 5 HOH B 101 344 344 HOH HOH . 
H 5 HOH B 102 345 345 HOH HOH . 
H 5 HOH B 103 346 346 HOH HOH . 
H 5 HOH B 104 347 347 HOH HOH . 
H 5 HOH B 105 352 352 HOH HOH . 
H 5 HOH B 106 353 353 HOH HOH . 
H 5 HOH B 107 354 354 HOH HOH . 
H 5 HOH B 108 355 355 HOH HOH . 
H 5 HOH B 109 356 356 HOH HOH . 
H 5 HOH B 110 357 357 HOH HOH . 
H 5 HOH B 111 359 359 HOH HOH . 
H 5 HOH B 112 362 362 HOH HOH . 
H 5 HOH B 113 363 363 HOH HOH . 
H 5 HOH B 114 365 365 HOH HOH . 
H 5 HOH B 115 368 368 HOH HOH . 
H 5 HOH B 116 369 369 HOH HOH . 
H 5 HOH B 117 370 370 HOH HOH . 
H 5 HOH B 118 371 371 HOH HOH . 
H 5 HOH B 119 373 373 HOH HOH . 
H 5 HOH B 120 379 379 HOH HOH . 
H 5 HOH B 121 383 383 HOH HOH . 
H 5 HOH B 122 384 384 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 4 28.277 48.425 26.81 1 50.04 ? C1 GOL 1001 B 1 
HETATM 2 O O1 GOL . . . E 4 28.6 48.443 25.433 1 50.95 ? O1 GOL 1001 B 1 
HETATM 3 C C2 GOL . . . E 4 27.603 47.117 27.236 1 49.17 ? C2 GOL 1001 B 1 
HETATM 4 O O2 GOL . . . E 4 26.581 46.721 26.341 1 46.44 ? O2 GOL 1001 B 1 
HETATM 5 C C3 GOL . . . E 4 28.635 46.011 27.388 1 47.24 ? C3 GOL 1001 B 1 
HETATM 6 O O3 GOL . . . E 4 28.209 44.807 26.783 1 44.89 ? O3 GOL 1001 B 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           346 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#