data_3G4F # _model_server_result.job_id qGlQZ8xGHR2euQr4VT8Uew _model_server_result.datetime_utc '2025-07-19 16:47:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g4f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":802}' # _entry.id 3G4F # _exptl.entry_id 3G4F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 400.317 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2Z,6E)-2-fluoro-3,7,11-trimethyldodeca-2,6,10-trien-1-yl trihydrogen diphosphate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3G4F _cell.length_a 158.195 _cell.length_b 158.195 _cell.length_c 158.195 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G4F _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,M 1 1 B,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 408 A CYS 408 1_555 A SG CYS 447 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 B SG CYS 408 B CYS 408 1_555 B SG CYS 447 B CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 A OD1 ASP 307 A ASP 307 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc2 A OD2 ASP 311 A ASP 311 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc3 F MG MG . A MG 604 1_555 E O1A FPF . A FPF 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc4 G MG MG . A MG 605 1_555 E O1B FPF . A FPF 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc5 B OD2 ASP 307 B ASP 307 1_555 K MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc6 J MG MG . B MG 601 1_555 I O1A FPF . B FPF 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? # _chem_comp.formula 'C15 H27 F O7 P2' _chem_comp.formula_weight 400.317 _chem_comp.id FPF _chem_comp.mon_nstd_flag . _chem_comp.name '(2Z,6E)-2-fluoro-3,7,11-trimethyldodeca-2,6,10-trien-1-yl trihydrogen diphosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 FPF sing 92 n n C1 C2 FPF sing 93 n n C1 H1 FPF sing 94 n n C1 H1A FPF sing 95 n n P1 O1 FPF sing 96 n n C3 C2 FPF doub 97 z n C2 F FPF sing 98 n n C4 C3 FPF sing 99 n n C3 C5 FPF sing 100 n n C4 H4 FPF sing 101 n n C4 H4A FPF sing 102 n n C4 H4B FPF sing 103 n n C6 C5 FPF sing 104 n n C5 H5 FPF sing 105 n n C5 H5A FPF sing 106 n n C7 C6 FPF sing 107 n n C6 H6 FPF sing 108 n n C6 H6A FPF sing 109 n n C8 C7 FPF doub 110 e n C7 H7 FPF sing 111 n n C9 C8 FPF sing 112 n n C8 C10 FPF sing 113 n n C10 H10 FPF sing 114 n n C10 H10A FPF sing 115 n n C10 H10B FPF sing 116 n n C11 C9 FPF sing 117 n n C9 H9 FPF sing 118 n n C9 H9A FPF sing 119 n n C11 C12 FPF sing 120 n n C11 H11 FPF sing 121 n n C11 H11A FPF sing 122 n n C13 C12 FPF doub 123 n n C12 H12 FPF sing 124 n n C15 C13 FPF sing 125 n n C13 C14 FPF sing 126 n n C14 H14 FPF sing 127 n n C14 H14A FPF sing 128 n n C14 H14B FPF sing 129 n n C15 H15 FPF sing 130 n n C15 H15A FPF sing 131 n n C15 H15B FPF sing 132 n n O1A P1 FPF doub 133 n n O2A P1 FPF sing 134 n n P1 O3A FPF sing 135 n n O2A HO2A FPF sing 136 n n P2 O3A FPF sing 137 n n O3B P2 FPF doub 138 n n P2 O1B FPF sing 139 n n P2 O2B FPF sing 140 n n O1B HO1B FPF sing 141 n n O2B HO2B FPF sing 142 n n # _atom_sites.entry_id 3G4F _atom_sites.fract_transf_matrix[1][1] 0.006321 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006321 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006321 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BME A 1 1273 1273 BME BME . D 2 BME A 1 1274 1274 BME BME . E 3 FPF A 1 801 801 FPF FPF . F 4 MG A 1 604 604 MG MG . G 4 MG A 1 605 605 MG MG . H 4 MG A 1 606 606 MG MG . I 3 FPF B 1 802 802 FPF FPF . J 4 MG B 1 601 601 MG MG . K 4 MG B 1 602 602 MG MG . L 4 MG B 1 603 603 MG MG . M 5 HOH A 1 555 555 HOH HOH . M 5 HOH A 2 556 556 HOH HOH . M 5 HOH A 3 557 557 HOH HOH . M 5 HOH A 4 558 558 HOH HOH . M 5 HOH A 5 559 559 HOH HOH . M 5 HOH A 6 560 560 HOH HOH . M 5 HOH A 7 561 561 HOH HOH . M 5 HOH A 8 562 562 HOH HOH . M 5 HOH A 9 563 563 HOH HOH . M 5 HOH A 10 564 564 HOH HOH . M 5 HOH A 11 565 565 HOH HOH . M 5 HOH A 12 566 566 HOH HOH . M 5 HOH A 13 567 567 HOH HOH . M 5 HOH A 14 568 568 HOH HOH . M 5 HOH A 15 569 569 HOH HOH . M 5 HOH A 16 570 570 HOH HOH . M 5 HOH A 17 571 571 HOH HOH . M 5 HOH A 18 572 572 HOH HOH . M 5 HOH A 19 573 573 HOH HOH . M 5 HOH A 20 574 574 HOH HOH . M 5 HOH A 21 575 575 HOH HOH . M 5 HOH A 22 576 576 HOH HOH . M 5 HOH A 23 577 577 HOH HOH . M 5 HOH A 24 578 578 HOH HOH . M 5 HOH A 25 579 579 HOH HOH . M 5 HOH A 26 580 580 HOH HOH . M 5 HOH A 27 581 581 HOH HOH . M 5 HOH A 28 582 582 HOH HOH . M 5 HOH A 29 583 583 HOH HOH . M 5 HOH A 30 584 584 HOH HOH . M 5 HOH A 31 585 585 HOH HOH . M 5 HOH A 32 587 587 HOH HOH . M 5 HOH A 33 588 588 HOH HOH . M 5 HOH A 34 589 589 HOH HOH . M 5 HOH A 35 590 590 HOH HOH . M 5 HOH A 36 591 591 HOH HOH . M 5 HOH A 37 592 592 HOH HOH . M 5 HOH A 38 593 593 HOH HOH . M 5 HOH A 39 594 594 HOH HOH . M 5 HOH A 40 595 595 HOH HOH . M 5 HOH A 41 596 596 HOH HOH . M 5 HOH A 42 597 597 HOH HOH . M 5 HOH A 43 598 598 HOH HOH . M 5 HOH A 44 599 599 HOH HOH . M 5 HOH A 45 600 600 HOH HOH . M 5 HOH A 46 601 601 HOH HOH . M 5 HOH A 47 602 602 HOH HOH . M 5 HOH A 48 603 603 HOH HOH . M 5 HOH A 49 607 607 HOH HOH . M 5 HOH A 50 608 608 HOH HOH . M 5 HOH A 51 609 609 HOH HOH . M 5 HOH A 52 610 610 HOH HOH . M 5 HOH A 53 611 611 HOH HOH . M 5 HOH A 54 612 612 HOH HOH . M 5 HOH A 55 613 613 HOH HOH . M 5 HOH A 56 614 614 HOH HOH . M 5 HOH A 57 615 615 HOH HOH . M 5 HOH A 58 616 616 HOH HOH . M 5 HOH A 59 617 617 HOH HOH . M 5 HOH A 60 618 618 HOH HOH . M 5 HOH A 61 619 619 HOH HOH . M 5 HOH A 62 620 620 HOH HOH . M 5 HOH A 63 621 621 HOH HOH . M 5 HOH A 64 622 622 HOH HOH . M 5 HOH A 65 623 623 HOH HOH . M 5 HOH A 66 624 624 HOH HOH . M 5 HOH A 67 625 625 HOH HOH . M 5 HOH A 68 626 626 HOH HOH . M 5 HOH A 69 627 627 HOH HOH . M 5 HOH A 70 628 628 HOH HOH . M 5 HOH A 71 629 629 HOH HOH . M 5 HOH A 72 630 630 HOH HOH . M 5 HOH A 73 631 631 HOH HOH . M 5 HOH A 74 632 632 HOH HOH . M 5 HOH A 75 633 633 HOH HOH . M 5 HOH A 76 634 634 HOH HOH . M 5 HOH A 77 635 635 HOH HOH . M 5 HOH A 78 636 636 HOH HOH . M 5 HOH A 79 637 637 HOH HOH . M 5 HOH A 80 638 638 HOH HOH . M 5 HOH A 81 639 639 HOH HOH . M 5 HOH A 82 640 640 HOH HOH . M 5 HOH A 83 641 641 HOH HOH . M 5 HOH A 84 642 642 HOH HOH . M 5 HOH A 85 643 643 HOH HOH . M 5 HOH A 86 644 644 HOH HOH . M 5 HOH A 87 645 645 HOH HOH . M 5 HOH A 88 646 646 HOH HOH . M 5 HOH A 89 647 647 HOH HOH . M 5 HOH A 90 648 648 HOH HOH . M 5 HOH A 91 649 649 HOH HOH . M 5 HOH A 92 650 650 HOH HOH . M 5 HOH A 93 651 651 HOH HOH . M 5 HOH A 94 652 652 HOH HOH . M 5 HOH A 95 653 653 HOH HOH . M 5 HOH A 96 654 654 HOH HOH . M 5 HOH A 97 655 655 HOH HOH . M 5 HOH A 98 656 656 HOH HOH . M 5 HOH A 99 657 657 HOH HOH . M 5 HOH A 100 658 658 HOH HOH . M 5 HOH A 101 659 659 HOH HOH . M 5 HOH A 102 660 660 HOH HOH . M 5 HOH A 103 661 661 HOH HOH . M 5 HOH A 104 662 662 HOH HOH . M 5 HOH A 105 664 664 HOH HOH . M 5 HOH A 106 665 665 HOH HOH . M 5 HOH A 107 666 666 HOH HOH . M 5 HOH A 108 667 667 HOH HOH . M 5 HOH A 109 668 668 HOH HOH . M 5 HOH A 110 669 669 HOH HOH . M 5 HOH A 111 670 670 HOH HOH . M 5 HOH A 112 671 671 HOH HOH . M 5 HOH A 113 672 672 HOH HOH . M 5 HOH A 114 673 673 HOH HOH . M 5 HOH A 115 674 674 HOH HOH . M 5 HOH A 116 675 675 HOH HOH . M 5 HOH A 117 676 676 HOH HOH . M 5 HOH A 118 677 677 HOH HOH . M 5 HOH A 119 678 678 HOH HOH . N 5 HOH B 1 555 555 HOH HOH . N 5 HOH B 2 556 556 HOH HOH . N 5 HOH B 3 557 557 HOH HOH . N 5 HOH B 4 558 558 HOH HOH . N 5 HOH B 5 559 559 HOH HOH . N 5 HOH B 6 560 560 HOH HOH . N 5 HOH B 7 561 561 HOH HOH . N 5 HOH B 8 562 562 HOH HOH . N 5 HOH B 9 563 563 HOH HOH . N 5 HOH B 10 564 564 HOH HOH . N 5 HOH B 11 565 565 HOH HOH . N 5 HOH B 12 566 566 HOH HOH . N 5 HOH B 13 567 567 HOH HOH . N 5 HOH B 14 568 568 HOH HOH . N 5 HOH B 15 569 569 HOH HOH . N 5 HOH B 16 570 570 HOH HOH . N 5 HOH B 17 571 571 HOH HOH . N 5 HOH B 18 572 572 HOH HOH . N 5 HOH B 19 573 573 HOH HOH . N 5 HOH B 20 574 574 HOH HOH . N 5 HOH B 21 575 575 HOH HOH . N 5 HOH B 22 576 576 HOH HOH . N 5 HOH B 23 577 577 HOH HOH . N 5 HOH B 24 578 578 HOH HOH . N 5 HOH B 25 579 579 HOH HOH . N 5 HOH B 26 580 580 HOH HOH . N 5 HOH B 27 581 581 HOH HOH . N 5 HOH B 28 582 582 HOH HOH . N 5 HOH B 29 583 583 HOH HOH . N 5 HOH B 30 584 584 HOH HOH . N 5 HOH B 31 585 585 HOH HOH . N 5 HOH B 32 586 586 HOH HOH . N 5 HOH B 33 587 587 HOH HOH . N 5 HOH B 34 588 588 HOH HOH . N 5 HOH B 35 589 589 HOH HOH . N 5 HOH B 36 590 590 HOH HOH . N 5 HOH B 37 591 591 HOH HOH . N 5 HOH B 38 592 592 HOH HOH . N 5 HOH B 39 593 593 HOH HOH . N 5 HOH B 40 594 594 HOH HOH . N 5 HOH B 41 595 595 HOH HOH . N 5 HOH B 42 596 596 HOH HOH . N 5 HOH B 43 597 597 HOH HOH . N 5 HOH B 44 598 598 HOH HOH . N 5 HOH B 45 599 599 HOH HOH . N 5 HOH B 46 600 600 HOH HOH . N 5 HOH B 47 604 604 HOH HOH . N 5 HOH B 48 605 605 HOH HOH . N 5 HOH B 49 606 606 HOH HOH . N 5 HOH B 50 607 607 HOH HOH . N 5 HOH B 51 608 608 HOH HOH . N 5 HOH B 52 609 609 HOH HOH . N 5 HOH B 53 610 610 HOH HOH . N 5 HOH B 54 611 611 HOH HOH . N 5 HOH B 55 612 612 HOH HOH . N 5 HOH B 56 613 586 HOH HOH . N 5 HOH B 57 663 663 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FPF . . . I 3 -3.946 -33.874 45.863 1 85.84 ? C1 FPF 802 B 1 HETATM 2 O O1 FPF . . . I 3 -3.838 -32.532 45.441 1 87.36 ? O1 FPF 802 B 1 HETATM 3 C C2 FPF . . . I 3 -4.358 -34.599 44.569 1 78.02 ? C2 FPF 802 B 1 HETATM 4 F F FPF . . . I 3 -4.055 -33.952 43.422 1 71.23 ? F FPF 802 B 1 HETATM 5 C C3 FPF . . . I 3 -5.091 -35.72 44.581 1 85.59 ? C3 FPF 802 B 1 HETATM 6 C C4 FPF . . . I 3 -5.412 -36.406 45.91 1 94.34 ? C4 FPF 802 B 1 HETATM 7 C C5 FPF . . . I 3 -5.645 -36.349 43.267 1 88.3 ? C5 FPF 802 B 1 HETATM 8 C C6 FPF . . . I 3 -5.264 -37.835 42.908 1 85.79 ? C6 FPF 802 B 1 HETATM 9 C C7 FPF . . . I 3 -5.992 -38.836 43.856 1 88.09 ? C7 FPF 802 B 1 HETATM 10 C C8 FPF . . . I 3 -6.053 -40.166 43.63 1 85.96 ? C8 FPF 802 B 1 HETATM 11 C C10 FPF . . . I 3 -5.446 -40.822 42.37 1 76.77 ? C10 FPF 802 B 1 HETATM 12 C C9 FPF . . . I 3 -6.776 -41.033 44.677 1 85.66 ? C9 FPF 802 B 1 HETATM 13 C C11 FPF . . . I 3 -5.852 -41.803 45.648 1 84.95 ? C11 FPF 802 B 1 HETATM 14 C C12 FPF . . . I 3 -6.345 -42.07 47.09 1 82.75 ? C12 FPF 802 B 1 HETATM 15 C C13 FPF . . . I 3 -6.539 -41.065 47.944 1 85.37 ? C13 FPF 802 B 1 HETATM 16 C C14 FPF . . . I 3 -7.018 -41.359 49.362 1 91.05 ? C14 FPF 802 B 1 HETATM 17 C C15 FPF . . . I 3 -6.304 -39.61 47.522 1 90.89 ? C15 FPF 802 B 1 HETATM 18 P P1 FPF . . . I 3 -4.507 -31.417 46.281 1 99.33 ? P1 FPF 802 B 1 HETATM 19 O O1A FPF . . . I 3 -5.483 -30.742 45.404 1 96.99 ? O1A FPF 802 B 1 HETATM 20 O O2A FPF . . . I 3 -5.199 -32.113 47.378 1 99.43 ? O2A FPF 802 B 1 HETATM 21 O O3A FPF . . . I 3 -3.401 -30.517 46.732 1 93.19 ? O3A FPF 802 B 1 HETATM 22 P P2 FPF . . . I 3 -2.575 -29.573 45.604 1 94.41 ? P2 FPF 802 B 1 HETATM 23 O O1B FPF . . . I 3 -2.046 -28.151 46.275 1 79.85 ? O1B FPF 802 B 1 HETATM 24 O O2B FPF . . . I 3 -1.239 -30.38 45.089 1 79.25 ? O2B FPF 802 B 1 HETATM 25 O O3B FPF . . . I 3 -3.518 -29.218 44.287 1 96.46 ? O3B FPF 802 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #