data_3G4G # _model_server_result.job_id LD7dzVXh-mKwyuiAfVcTzA _model_server_result.datetime_utc '2024-11-17 09:49:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g4g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":3}' # _entry.id 3G4G # _exptl.entry_id 3G4G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.43 _cell.angle_gamma 90 _cell.entry_id 3G4G _cell.length_a 63.129 _cell.length_b 75.311 _cell.length_c 162.559 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G4G _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 PISA monomeric 1 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,U 1 1 B,I,J,K,L,V 2 1 C,M,N,O,P,W 3 1 D,Q,R,S,T,X 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 K N N ? 4 O N N ? 4 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 U O HOH . A HOH 50 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc2 U O HOH . A HOH 80 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc3 A NE2 HIS 166 A HIS 330 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc4 A NE2 HIS 202 A HIS 366 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc5 A OD2 ASP 203 A ASP 367 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc6 A OD1 ASP 203 A ASP 367 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc7 A OD1 ASP 320 A ASP 484 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc8 U O HOH . A HOH 586 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc9 V O HOH . B HOH 59 1_555 I ZN ZN . B ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc10 V O HOH . B HOH 96 1_555 J MG MG . B MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc11 V O HOH . B HOH 118 1_555 J MG MG . B MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc12 B NE2 HIS 166 B HIS 330 1_555 I ZN ZN . B ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc13 B NE2 HIS 202 B HIS 366 1_555 I ZN ZN . B ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc14 B OD2 ASP 203 B ASP 367 1_555 I ZN ZN . B ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc15 B OD1 ASP 203 B ASP 367 1_555 J MG MG . B MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc16 B OD1 ASP 320 B ASP 484 1_555 I ZN ZN . B ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc17 V O HOH . B HOH 586 1_555 J MG MG . B MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc18 W O HOH . C HOH 34 1_555 M ZN ZN . C ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc19 W O HOH . C HOH 72 1_555 N MG MG . C MG 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc20 W O HOH . C HOH 88 1_555 N MG MG . C MG 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc21 C NE2 HIS 166 C HIS 330 1_555 M ZN ZN . C ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc22 C NE2 HIS 202 C HIS 366 1_555 M ZN ZN . C ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc23 C OD2 ASP 203 C ASP 367 1_555 M ZN ZN . C ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc24 C OD1 ASP 203 C ASP 367 1_555 N MG MG . C MG 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc25 C OD1 ASP 320 C ASP 484 1_555 M ZN ZN . C ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc26 W O HOH . C HOH 587 1_555 M ZN ZN . C ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc27 W O HOH . C HOH 587 1_555 N MG MG . C MG 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc28 X O HOH . D HOH 6 1_555 R MG MG . D MG 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc29 X O HOH . D HOH 21 1_555 Q ZN ZN . D ZN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc30 X O HOH . D HOH 67 1_555 R MG MG . D MG 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc31 X O HOH . D HOH 84 1_555 R MG MG . D MG 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc32 X O HOH . D HOH 140 1_555 R MG MG . D MG 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc33 D NE2 HIS 166 D HIS 330 1_555 Q ZN ZN . D ZN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc34 D NE2 HIS 202 D HIS 366 1_555 Q ZN ZN . D ZN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc35 D OD2 ASP 203 D ASP 367 1_555 Q ZN ZN . D ZN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc36 D OD1 ASP 203 D ASP 367 1_555 R MG MG . D MG 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc37 D OD1 ASP 320 D ASP 484 1_555 Q ZN ZN . D ZN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3G4G _atom_sites.fract_transf_matrix[1][1] 0.015841 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000671 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013278 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN A 1 801 801 ZN ZN . F 3 MG A 1 802 802 MG MG . G 4 CA A 1 4 4 CA CA . H 5 D71 A 1 901 901 D71 BIC . I 2 ZN B 1 803 803 ZN ZN . J 3 MG B 1 804 804 MG MG . K 4 CA B 1 1 1 CA CA . L 5 D71 B 1 902 902 D71 BIC . M 2 ZN C 1 805 805 ZN ZN . N 3 MG C 1 806 806 MG MG . O 4 CA C 1 2 2 CA CA . P 5 D71 C 1 903 903 D71 BIC . Q 2 ZN D 1 807 807 ZN ZN . R 3 MG D 1 808 808 MG MG . S 4 CA D 1 3 3 CA CA . T 5 D71 D 1 904 904 D71 BIC . U 6 HOH A 1 3 3 HOH HOH . U 6 HOH A 2 5 5 HOH HOH . U 6 HOH A 3 7 7 HOH HOH . U 6 HOH A 4 14 14 HOH HOH . U 6 HOH A 5 16 16 HOH HOH . U 6 HOH A 6 17 17 HOH HOH . U 6 HOH A 7 19 19 HOH HOH . U 6 HOH A 8 20 20 HOH HOH . U 6 HOH A 9 24 24 HOH HOH . U 6 HOH A 10 43 43 HOH HOH . U 6 HOH A 11 44 44 HOH HOH . U 6 HOH A 12 46 46 HOH HOH . U 6 HOH A 13 47 47 HOH HOH . U 6 HOH A 14 49 49 HOH HOH . U 6 HOH A 15 50 50 HOH HOH . U 6 HOH A 16 54 54 HOH HOH . U 6 HOH A 17 60 60 HOH HOH . U 6 HOH A 18 65 65 HOH HOH . U 6 HOH A 19 69 69 HOH HOH . U 6 HOH A 20 73 73 HOH HOH . U 6 HOH A 21 78 78 HOH HOH . U 6 HOH A 22 80 80 HOH HOH . U 6 HOH A 23 89 89 HOH HOH . U 6 HOH A 24 99 99 HOH HOH . U 6 HOH A 25 100 100 HOH HOH . U 6 HOH A 26 102 102 HOH HOH . U 6 HOH A 27 105 105 HOH HOH . U 6 HOH A 28 116 116 HOH HOH . U 6 HOH A 29 119 119 HOH HOH . U 6 HOH A 30 120 120 HOH HOH . U 6 HOH A 31 124 124 HOH HOH . U 6 HOH A 32 125 125 HOH HOH . U 6 HOH A 33 139 139 HOH HOH . U 6 HOH A 34 148 148 HOH HOH . U 6 HOH A 35 152 152 HOH HOH . U 6 HOH A 36 154 154 HOH HOH . U 6 HOH A 37 155 155 HOH HOH . U 6 HOH A 38 157 157 HOH HOH . U 6 HOH A 39 586 166 HOH HOH . V 6 HOH B 1 2 2 HOH HOH . V 6 HOH B 2 11 11 HOH HOH . V 6 HOH B 3 15 15 HOH HOH . V 6 HOH B 4 18 18 HOH HOH . V 6 HOH B 5 26 26 HOH HOH . V 6 HOH B 6 32 32 HOH HOH . V 6 HOH B 7 35 35 HOH HOH . V 6 HOH B 8 42 42 HOH HOH . V 6 HOH B 9 52 52 HOH HOH . V 6 HOH B 10 53 53 HOH HOH . V 6 HOH B 11 59 59 HOH HOH . V 6 HOH B 12 64 64 HOH HOH . V 6 HOH B 13 74 74 HOH HOH . V 6 HOH B 14 82 82 HOH HOH . V 6 HOH B 15 92 92 HOH HOH . V 6 HOH B 16 96 96 HOH HOH . V 6 HOH B 17 98 98 HOH HOH . V 6 HOH B 18 103 103 HOH HOH . V 6 HOH B 19 111 111 HOH HOH . V 6 HOH B 20 112 112 HOH HOH . V 6 HOH B 21 113 113 HOH HOH . V 6 HOH B 22 114 114 HOH HOH . V 6 HOH B 23 117 117 HOH HOH . V 6 HOH B 24 118 118 HOH HOH . V 6 HOH B 25 121 121 HOH HOH . V 6 HOH B 26 123 123 HOH HOH . V 6 HOH B 27 127 127 HOH HOH . V 6 HOH B 28 129 129 HOH HOH . V 6 HOH B 29 130 130 HOH HOH . V 6 HOH B 30 131 131 HOH HOH . V 6 HOH B 31 141 141 HOH HOH . V 6 HOH B 32 151 151 HOH HOH . V 6 HOH B 33 158 158 HOH HOH . V 6 HOH B 34 159 159 HOH HOH . V 6 HOH B 35 586 165 HOH HOH . W 6 HOH C 1 4 4 HOH HOH . W 6 HOH C 2 8 8 HOH HOH . W 6 HOH C 3 9 9 HOH HOH . W 6 HOH C 4 10 10 HOH HOH . W 6 HOH C 5 25 25 HOH HOH . W 6 HOH C 6 30 30 HOH HOH . W 6 HOH C 7 31 31 HOH HOH . W 6 HOH C 8 34 34 HOH HOH . W 6 HOH C 9 38 38 HOH HOH . W 6 HOH C 10 39 39 HOH HOH . W 6 HOH C 11 40 40 HOH HOH . W 6 HOH C 12 41 41 HOH HOH . W 6 HOH C 13 48 48 HOH HOH . W 6 HOH C 14 55 55 HOH HOH . W 6 HOH C 15 56 56 HOH HOH . W 6 HOH C 16 57 57 HOH HOH . W 6 HOH C 17 62 62 HOH HOH . W 6 HOH C 18 66 66 HOH HOH . W 6 HOH C 19 71 71 HOH HOH . W 6 HOH C 20 72 72 HOH HOH . W 6 HOH C 21 75 75 HOH HOH . W 6 HOH C 22 79 79 HOH HOH . W 6 HOH C 23 83 83 HOH HOH . W 6 HOH C 24 85 85 HOH HOH . W 6 HOH C 25 87 87 HOH HOH . W 6 HOH C 26 88 88 HOH HOH . W 6 HOH C 27 91 91 HOH HOH . W 6 HOH C 28 94 94 HOH HOH . W 6 HOH C 29 97 97 HOH HOH . W 6 HOH C 30 101 101 HOH HOH . W 6 HOH C 31 106 106 HOH HOH . W 6 HOH C 32 107 107 HOH HOH . W 6 HOH C 33 110 110 HOH HOH . W 6 HOH C 34 115 115 HOH HOH . W 6 HOH C 35 122 122 HOH HOH . W 6 HOH C 36 136 136 HOH HOH . W 6 HOH C 37 138 138 HOH HOH . W 6 HOH C 38 143 143 HOH HOH . W 6 HOH C 39 144 144 HOH HOH . W 6 HOH C 40 145 145 HOH HOH . W 6 HOH C 41 146 146 HOH HOH . W 6 HOH C 42 149 149 HOH HOH . W 6 HOH C 43 153 153 HOH HOH . W 6 HOH C 44 160 160 HOH HOH . W 6 HOH C 45 161 161 HOH HOH . W 6 HOH C 46 586 162 HOH HOH . W 6 HOH C 47 587 167 HOH HOH . W 6 HOH C 48 588 168 HOH HOH . X 6 HOH D 1 1 1 HOH HOH . X 6 HOH D 2 6 6 HOH HOH . X 6 HOH D 3 12 12 HOH HOH . X 6 HOH D 4 13 13 HOH HOH . X 6 HOH D 5 21 21 HOH HOH . X 6 HOH D 6 22 22 HOH HOH . X 6 HOH D 7 23 23 HOH HOH . X 6 HOH D 8 27 27 HOH HOH . X 6 HOH D 9 29 29 HOH HOH . X 6 HOH D 10 33 33 HOH HOH . X 6 HOH D 11 36 36 HOH HOH . X 6 HOH D 12 37 37 HOH HOH . X 6 HOH D 13 45 45 HOH HOH . X 6 HOH D 14 51 51 HOH HOH . X 6 HOH D 15 58 58 HOH HOH . X 6 HOH D 16 61 61 HOH HOH . X 6 HOH D 17 63 63 HOH HOH . X 6 HOH D 18 67 67 HOH HOH . X 6 HOH D 19 68 68 HOH HOH . X 6 HOH D 20 70 70 HOH HOH . X 6 HOH D 21 76 76 HOH HOH . X 6 HOH D 22 77 77 HOH HOH . X 6 HOH D 23 81 81 HOH HOH . X 6 HOH D 24 84 84 HOH HOH . X 6 HOH D 25 86 86 HOH HOH . X 6 HOH D 26 90 90 HOH HOH . X 6 HOH D 27 93 93 HOH HOH . X 6 HOH D 28 95 95 HOH HOH . X 6 HOH D 29 104 104 HOH HOH . X 6 HOH D 30 108 108 HOH HOH . X 6 HOH D 31 109 109 HOH HOH . X 6 HOH D 32 126 126 HOH HOH . X 6 HOH D 33 128 128 HOH HOH . X 6 HOH D 34 132 132 HOH HOH . X 6 HOH D 35 133 133 HOH HOH . X 6 HOH D 36 134 134 HOH HOH . X 6 HOH D 37 135 135 HOH HOH . X 6 HOH D 38 137 137 HOH HOH . X 6 HOH D 39 140 140 HOH HOH . X 6 HOH D 40 142 142 HOH HOH . X 6 HOH D 41 147 147 HOH HOH . X 6 HOH D 42 150 150 HOH HOH . X 6 HOH D 43 156 156 HOH HOH . X 6 HOH D 44 586 163 HOH HOH . X 6 HOH D 45 587 164 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id S _atom_site.label_entity_id 4 _atom_site.Cartn_x 7.262 _atom_site.Cartn_y 9.536 _atom_site.Cartn_z -123.387 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.42 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 3 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 95 _model_server_stats.query_time_ms 522 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #