data_3G4T # _model_server_result.job_id CmIaALOmIaYU_F5eFd9S4w _model_server_result.datetime_utc '2024-11-15 03:00:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g4t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":10}' # _entry.id 3G4T # _exptl.entry_id 3G4T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3G4T _cell.length_a 100.764 _cell.length_b 79.6 _cell.length_c 99.409 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G4T _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O3' DA 4 H DA 4 1_555 C P UPS 5 H UPS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? covale ? covale2 C O3' UPS 5 H UPS 5 1_555 C P DT 6 H DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? metalc ? metalc1 A OE2 GLU 38 A GLU 38 1_555 F MG MG . A MG 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc2 E O4 PO4 . A PO4 266 1_555 F MG MG . A MG 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc3 F MG MG . A MG 267 1_555 C O3' DA 7 H DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc4 B OE2 GLU 38 B GLU 38 1_555 H MG MG . B MG 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc5 G O4 PO4 . B PO4 266 1_555 H MG MG . B MG 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc6 H MG MG . B MG 267 1_555 D O3' DG 9 I DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? hydrog WATSON-CRICK hydrog1 C N3 DC 1 H DC 1 1_555 D N1 DG 9 I DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N4 DC 1 H DC 1 1_555 D O6 DG 9 I DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C O2 DC 1 H DC 1 1_555 D N2 DG 9 I DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N1 DG 2 H DG 2 1_555 D N3 DC 8 I DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C N2 DG 2 H DG 2 1_555 D O2 DC 8 I DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C O6 DG 2 H DG 2 1_555 D N4 DC 8 I DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C N3 DT 3 H DT 3 1_555 D N1 DA 7 I DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C O4 DT 3 H DT 3 1_555 D N6 DA 7 I DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 C N1 DA 4 H DA 4 1_555 D N3 DT 6 I DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C N6 DA 4 H DA 4 1_555 D O4 DT 6 I DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N3 DT 6 H DT 6 1_555 D N1 DA 4 I DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C O4 DT 6 H DT 6 1_555 D N6 DA 4 I DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C N1 DA 7 H DA 7 1_555 D N3 DT 3 I DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C N6 DA 7 H DA 7 1_555 D O4 DT 3 I DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 409 n n P O2 PO4 sing 410 n n P O3 PO4 sing 411 n n P O4 PO4 sing 412 n n # _atom_sites.entry_id 3G4T _atom_sites.fract_transf_matrix[1][1] 0.009924 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012563 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010059 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 PO4 A 1 266 1 PO4 PO4 . F 5 MG A 1 267 1 MG MG . G 4 PO4 B 1 266 2 PO4 PO4 . H 5 MG B 1 267 1 MG MG . I 4 PO4 I 1 10 3 PO4 PO4 . J 6 HOH A 1 268 5 HOH HOH . J 6 HOH A 2 269 8 HOH HOH . J 6 HOH A 3 270 14 HOH HOH . J 6 HOH A 4 271 17 HOH HOH . J 6 HOH A 5 272 1 HOH HOH . J 6 HOH A 6 273 2 HOH HOH . J 6 HOH A 7 274 3 HOH HOH . J 6 HOH A 8 275 5 HOH HOH . J 6 HOH A 9 276 7 HOH HOH . J 6 HOH A 10 277 8 HOH HOH . J 6 HOH A 11 278 10 HOH HOH . J 6 HOH A 12 279 11 HOH HOH . J 6 HOH A 13 280 12 HOH HOH . K 6 HOH B 1 268 7 HOH HOH . K 6 HOH B 2 269 4 HOH HOH . L 6 HOH H 1 10 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . I 4 51.232 10.16 28.12 1 165.25 ? P PO4 10 I 1 HETATM 2 O O1 PO4 . . . I 4 51.407 10.513 26.662 1 165.4 ? O1 PO4 10 I 1 HETATM 3 O O2 PO4 . . . I 4 50.581 8.799 28.214 1 165.24 ? O2 PO4 10 I 1 HETATM 4 O O3 PO4 . . . I 4 52.586 10.148 28.794 1 165.07 ? O3 PO4 10 I 1 HETATM 5 O O4 PO4 . . . I 4 50.35 11.183 28.797 1 164.94 ? O4 PO4 10 I 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #