data_3G4V # _model_server_result.job_id NsMztyQrqPRoknRN--FF4Q _model_server_result.datetime_utc '2024-10-14 07:24:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g4v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":147}' # _entry.id 3G4V # _exptl.entry_id 3G4V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 121.84 _cell.angle_gamma 90 _cell.entry_id 3G4V _cell.length_a 93.25 _cell.length_b 43.89 _cell.length_c 83.41 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G4V _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 101 A HIS 101 1_555 C FE HEM . A HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc2 C FE HEM . A HEM 147 1_555 D C CMO . A CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? metalc ? metalc3 B NE2 HIS 101 B HIS 101 1_555 F FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc4 F FE HEM . B HEM 147 1_555 G C CMO . B CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 146 n n CHA C4D HEM doub 147 n n CHA HHA HEM sing 148 n n CHB C4A HEM sing 149 n n CHB C1B HEM doub 150 n n CHB HHB HEM sing 151 n n CHC C4B HEM sing 152 n n CHC C1C HEM doub 153 n n CHC HHC HEM sing 154 n n CHD C4C HEM doub 155 n n CHD C1D HEM sing 156 n n CHD HHD HEM sing 157 n n C1A C2A HEM doub 158 n y C1A NA HEM sing 159 n y C2A C3A HEM sing 160 n y C2A CAA HEM sing 161 n n C3A C4A HEM doub 162 n y C3A CMA HEM sing 163 n n C4A NA HEM sing 164 n y CMA HMA HEM sing 165 n n CMA HMAA HEM sing 166 n n CMA HMAB HEM sing 167 n n CAA CBA HEM sing 168 n n CAA HAA HEM sing 169 n n CAA HAAA HEM sing 170 n n CBA CGA HEM sing 171 n n CBA HBA HEM sing 172 n n CBA HBAA HEM sing 173 n n CGA O1A HEM doub 174 n n CGA O2A HEM sing 175 n n C1B C2B HEM sing 176 n n C1B NB HEM sing 177 n n C2B C3B HEM doub 178 n n C2B CMB HEM sing 179 n n C3B C4B HEM sing 180 n n C3B CAB HEM sing 181 n n C4B NB HEM doub 182 n n CMB HMB HEM sing 183 n n CMB HMBA HEM sing 184 n n CMB HMBB HEM sing 185 n n CAB CBB HEM doub 186 n n CAB HAB HEM sing 187 n n CBB HBB HEM sing 188 n n CBB HBBA HEM sing 189 n n C1C C2C HEM sing 190 n y C1C NC HEM sing 191 n y C2C C3C HEM doub 192 n y C2C CMC HEM sing 193 n n C3C C4C HEM sing 194 n y C3C CAC HEM sing 195 n n C4C NC HEM sing 196 n y CMC HMC HEM sing 197 n n CMC HMCA HEM sing 198 n n CMC HMCB HEM sing 199 n n CAC CBC HEM doub 200 n n CAC HAC HEM sing 201 n n CBC HBC HEM sing 202 n n CBC HBCA HEM sing 203 n n C1D C2D HEM sing 204 n n C1D ND HEM doub 205 n n C2D C3D HEM doub 206 n n C2D CMD HEM sing 207 n n C3D C4D HEM sing 208 n n C3D CAD HEM sing 209 n n C4D ND HEM sing 210 n n CMD HMD HEM sing 211 n n CMD HMDA HEM sing 212 n n CMD HMDB HEM sing 213 n n CAD CBD HEM sing 214 n n CAD HAD HEM sing 215 n n CAD HADA HEM sing 216 n n CBD CGD HEM sing 217 n n CBD HBD HEM sing 218 n n CBD HBDA HEM sing 219 n n CGD O1D HEM doub 220 n n CGD O2D HEM sing 221 n n O2A H2A HEM sing 222 n n O2D H2D HEM sing 223 n n FE NA HEM sing 224 n n FE NB HEM sing 225 n n FE NC HEM sing 226 n n FE ND HEM sing 227 n n # _atom_sites.entry_id 3G4V _atom_sites.fract_transf_matrix[1][1] 0.010724 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006659 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022784 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014113 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 147 147 HEM HEM . D 3 CMO A 1 148 148 CMO CMO . E 4 7CL A 1 150 150 7CL 7CL . F 2 HEM B 1 147 147 HEM HEM . G 3 CMO B 1 148 148 CMO CMO . H 4 7CL B 1 151 151 7CL 7CL . I 5 HOH A 1 149 149 HOH HOH . I 5 HOH A 2 151 151 HOH HOH . I 5 HOH A 3 152 152 HOH HOH . I 5 HOH A 4 153 153 HOH HOH . I 5 HOH A 5 154 154 HOH HOH . I 5 HOH A 6 155 155 HOH HOH . I 5 HOH A 7 156 156 HOH HOH . I 5 HOH A 8 157 157 HOH HOH . I 5 HOH A 9 158 158 HOH HOH . I 5 HOH A 10 159 159 HOH HOH . I 5 HOH A 11 160 160 HOH HOH . I 5 HOH A 12 161 161 HOH HOH . I 5 HOH A 13 162 162 HOH HOH . I 5 HOH A 14 163 163 HOH HOH . I 5 HOH A 15 164 164 HOH HOH . I 5 HOH A 16 165 165 HOH HOH . I 5 HOH A 17 166 166 HOH HOH . I 5 HOH A 18 167 167 HOH HOH . I 5 HOH A 19 168 168 HOH HOH . I 5 HOH A 20 169 169 HOH HOH . I 5 HOH A 21 170 170 HOH HOH . I 5 HOH A 22 171 171 HOH HOH . I 5 HOH A 23 172 172 HOH HOH . I 5 HOH A 24 173 173 HOH HOH . I 5 HOH A 25 174 174 HOH HOH . I 5 HOH A 26 175 175 HOH HOH . I 5 HOH A 27 176 176 HOH HOH . I 5 HOH A 28 177 177 HOH HOH . I 5 HOH A 29 178 178 HOH HOH . I 5 HOH A 30 179 179 HOH HOH . I 5 HOH A 31 180 180 HOH HOH . I 5 HOH A 32 181 181 HOH HOH . I 5 HOH A 33 182 182 HOH HOH . I 5 HOH A 34 183 183 HOH HOH . I 5 HOH A 35 184 184 HOH HOH . I 5 HOH A 36 185 185 HOH HOH . I 5 HOH A 37 186 186 HOH HOH . I 5 HOH A 38 187 187 HOH HOH . I 5 HOH A 39 188 188 HOH HOH . J 5 HOH B 1 149 149 HOH HOH . J 5 HOH B 2 150 150 HOH HOH . J 5 HOH B 3 152 152 HOH HOH . J 5 HOH B 4 153 153 HOH HOH . J 5 HOH B 5 154 154 HOH HOH . J 5 HOH B 6 155 155 HOH HOH . J 5 HOH B 7 156 156 HOH HOH . J 5 HOH B 8 157 157 HOH HOH . J 5 HOH B 9 158 158 HOH HOH . J 5 HOH B 10 159 159 HOH HOH . J 5 HOH B 11 160 160 HOH HOH . J 5 HOH B 12 161 161 HOH HOH . J 5 HOH B 13 162 162 HOH HOH . J 5 HOH B 14 163 163 HOH HOH . J 5 HOH B 15 164 164 HOH HOH . J 5 HOH B 16 165 165 HOH HOH . J 5 HOH B 17 166 166 HOH HOH . J 5 HOH B 18 167 167 HOH HOH . J 5 HOH B 19 168 168 HOH HOH . J 5 HOH B 20 169 169 HOH HOH . J 5 HOH B 21 170 170 HOH HOH . J 5 HOH B 22 171 171 HOH HOH . J 5 HOH B 23 172 172 HOH HOH . J 5 HOH B 24 173 173 HOH HOH . J 5 HOH B 25 174 174 HOH HOH . J 5 HOH B 26 175 175 HOH HOH . J 5 HOH B 27 176 176 HOH HOH . J 5 HOH B 28 177 177 HOH HOH . J 5 HOH B 29 178 178 HOH HOH . J 5 HOH B 30 179 179 HOH HOH . J 5 HOH B 31 180 180 HOH HOH . J 5 HOH B 32 181 181 HOH HOH . J 5 HOH B 33 182 182 HOH HOH . J 5 HOH B 34 183 183 HOH HOH . J 5 HOH B 35 184 184 HOH HOH . J 5 HOH B 36 185 185 HOH HOH . J 5 HOH B 37 186 186 HOH HOH . J 5 HOH B 38 187 187 HOH HOH . J 5 HOH B 39 188 188 HOH HOH . J 5 HOH B 40 189 189 HOH HOH . J 5 HOH B 41 190 190 HOH HOH . J 5 HOH B 42 191 191 HOH HOH . J 5 HOH B 43 192 192 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . F 2 31.167 -1.557 9.652 1 21.59 ? CHA HEM 147 B 1 HETATM 2 C CHB HEM . . . F 2 28.601 1.64 12.284 1 21.59 ? CHB HEM 147 B 1 HETATM 3 C CHC HEM . . . F 2 25.889 2.646 8.346 1 21.59 ? CHC HEM 147 B 1 HETATM 4 C CHD HEM . . . F 2 28.815 -0.153 5.623 1 21.59 ? CHD HEM 147 B 1 HETATM 5 C C1A HEM . . . F 2 30.652 -0.831 10.734 1 21.59 ? C1A HEM 147 B 1 HETATM 6 C C2A HEM . . . F 2 31.181 -0.877 12.083 1 21.59 ? C2A HEM 147 B 1 HETATM 7 C C3A HEM . . . F 2 30.466 0.004 12.835 1 21.59 ? C3A HEM 147 B 1 HETATM 8 C C4A HEM . . . F 2 29.503 0.618 11.937 1 21.59 ? C4A HEM 147 B 1 HETATM 9 C CMA HEM . . . F 2 30.668 0.291 14.319 1 21.59 ? CMA HEM 147 B 1 HETATM 10 C CAA HEM . . . F 2 32.402 -1.677 12.516 1 21.59 ? CAA HEM 147 B 1 HETATM 11 C CBA HEM . . . F 2 33.666 -0.969 12.056 1 21.59 ? CBA HEM 147 B 1 HETATM 12 C CGA HEM . . . F 2 34.906 -1.817 12.244 1 21.59 ? CGA HEM 147 B 1 HETATM 13 O O1A HEM . . . F 2 35.119 -2.305 13.374 1 21.59 ? O1A HEM 147 B 1 HETATM 14 O O2A HEM . . . F 2 35.666 -1.991 11.263 1 21.59 ? O2A HEM 147 B 1 HETATM 15 C C1B HEM . . . F 2 27.687 2.269 11.415 1 21.59 ? C1B HEM 147 B 1 HETATM 16 C C2B HEM . . . F 2 26.691 3.261 11.815 1 21.59 ? C2B HEM 147 B 1 HETATM 17 C C3B HEM . . . F 2 25.85 3.46 10.748 1 21.59 ? C3B HEM 147 B 1 HETATM 18 C C4B HEM . . . F 2 26.39 2.644 9.659 1 21.59 ? C4B HEM 147 B 1 HETATM 19 C CMB HEM . . . F 2 26.693 4.04 13.127 1 21.59 ? CMB HEM 147 B 1 HETATM 20 C CAB HEM . . . F 2 24.733 4.3 10.633 1 21.59 ? CAB HEM 147 B 1 HETATM 21 C CBB HEM . . . F 2 23.869 4.789 11.685 1 21.59 ? CBB HEM 147 B 1 HETATM 22 C C1C HEM . . . F 2 26.444 1.966 7.257 1 21.59 ? C1C HEM 147 B 1 HETATM 23 C C2C HEM . . . F 2 25.881 1.96 5.915 1 21.59 ? C2C HEM 147 B 1 HETATM 24 C C3C HEM . . . F 2 26.696 1.19 5.129 1 21.59 ? C3C HEM 147 B 1 HETATM 25 C C4C HEM . . . F 2 27.783 0.728 6.01 1 21.59 ? C4C HEM 147 B 1 HETATM 26 C CMC HEM . . . F 2 24.595 2.667 5.49 1 21.59 ? CMC HEM 147 B 1 HETATM 27 C CAC HEM . . . F 2 26.531 0.825 3.786 1 21.59 ? CAC HEM 147 B 1 HETATM 28 C CBC HEM . . . F 2 25.892 1.585 2.734 1 21.59 ? CBC HEM 147 B 1 HETATM 29 C C1D HEM . . . F 2 29.728 -0.774 6.492 1 21.59 ? C1D HEM 147 B 1 HETATM 30 C C2D HEM . . . F 2 30.658 -1.827 6.107 1 21.59 ? C2D HEM 147 B 1 HETATM 31 C C3D HEM . . . F 2 31.272 -2.252 7.237 1 21.59 ? C3D HEM 147 B 1 HETATM 32 C C4D HEM . . . F 2 30.757 -1.441 8.324 1 21.59 ? C4D HEM 147 B 1 HETATM 33 C CMD HEM . . . F 2 30.915 -2.381 4.717 1 21.59 ? CMD HEM 147 B 1 HETATM 34 C CAD HEM . . . F 2 32.236 -3.432 7.367 1 21.59 ? CAD HEM 147 B 1 HETATM 35 C CBD HEM . . . F 2 31.552 -4.695 7.87 1 21.59 ? CBD HEM 147 B 1 HETATM 36 C CGD HEM . . . F 2 32.538 -5.809 8.17 1 21.59 ? CGD HEM 147 B 1 HETATM 37 O O1D HEM . . . F 2 33.195 -6.3 7.227 1 21.59 ? O1D HEM 147 B 1 HETATM 38 O O2D HEM . . . F 2 32.66 -6.189 9.353 1 21.59 ? O2D HEM 147 B 1 HETATM 39 N NA HEM . . . F 2 29.645 0.106 10.646 1 21.59 ? NA HEM 147 B 1 HETATM 40 N NB HEM . . . F 2 27.522 1.937 10.078 1 21.59 ? NB HEM 147 B 1 HETATM 41 N NC HEM . . . F 2 27.592 1.191 7.314 1 21.59 ? NC HEM 147 B 1 HETATM 42 N ND HEM . . . F 2 29.79 -0.56 7.867 1 21.59 ? ND HEM 147 B 1 HETATM 43 FE FE HEM . . . F 2 28.671 0.708 8.976 1 21.59 ? FE HEM 147 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #