data_3G4V # _model_server_result.job_id FpgYH8QKT-iRfMeLUk_lcQ _model_server_result.datetime_utc '2024-10-14 07:23:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g4v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":151}' # _entry.id 3G4V # _exptl.entry_id 3G4V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.594 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-chloropentane _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 121.84 _cell.angle_gamma 90 _cell.entry_id 3G4V _cell.length_a 93.25 _cell.length_b 43.89 _cell.length_c 83.41 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G4V _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 101 A HIS 101 1_555 C FE HEM . A HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc2 C FE HEM . A HEM 147 1_555 D C CMO . A CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? metalc ? metalc3 B NE2 HIS 101 B HIS 101 1_555 F FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc4 F FE HEM . B HEM 147 1_555 G C CMO . B CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? # _chem_comp.formula 'C5 H11 Cl' _chem_comp.formula_weight 106.594 _chem_comp.id 7CL _chem_comp.mon_nstd_flag . _chem_comp.name 1-chloropentane _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 CL1 7CL sing 1 n n C2 C1 7CL sing 2 n n C1 H1 7CL sing 3 n n C1 H1A 7CL sing 4 n n C3 C2 7CL sing 5 n n C2 H2 7CL sing 6 n n C2 H2A 7CL sing 7 n n C4 C3 7CL sing 8 n n C3 H3 7CL sing 9 n n C3 H3A 7CL sing 10 n n C4 C5 7CL sing 11 n n C4 H4 7CL sing 12 n n C4 H4A 7CL sing 13 n n C5 H5 7CL sing 14 n n C5 H5A 7CL sing 15 n n C5 H5B 7CL sing 16 n n # _atom_sites.entry_id 3G4V _atom_sites.fract_transf_matrix[1][1] 0.010724 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006659 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022784 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014113 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 147 147 HEM HEM . D 3 CMO A 1 148 148 CMO CMO . E 4 7CL A 1 150 150 7CL 7CL . F 2 HEM B 1 147 147 HEM HEM . G 3 CMO B 1 148 148 CMO CMO . H 4 7CL B 1 151 151 7CL 7CL . I 5 HOH A 1 149 149 HOH HOH . I 5 HOH A 2 151 151 HOH HOH . I 5 HOH A 3 152 152 HOH HOH . I 5 HOH A 4 153 153 HOH HOH . I 5 HOH A 5 154 154 HOH HOH . I 5 HOH A 6 155 155 HOH HOH . I 5 HOH A 7 156 156 HOH HOH . I 5 HOH A 8 157 157 HOH HOH . I 5 HOH A 9 158 158 HOH HOH . I 5 HOH A 10 159 159 HOH HOH . I 5 HOH A 11 160 160 HOH HOH . I 5 HOH A 12 161 161 HOH HOH . I 5 HOH A 13 162 162 HOH HOH . I 5 HOH A 14 163 163 HOH HOH . I 5 HOH A 15 164 164 HOH HOH . I 5 HOH A 16 165 165 HOH HOH . I 5 HOH A 17 166 166 HOH HOH . I 5 HOH A 18 167 167 HOH HOH . I 5 HOH A 19 168 168 HOH HOH . I 5 HOH A 20 169 169 HOH HOH . I 5 HOH A 21 170 170 HOH HOH . I 5 HOH A 22 171 171 HOH HOH . I 5 HOH A 23 172 172 HOH HOH . I 5 HOH A 24 173 173 HOH HOH . I 5 HOH A 25 174 174 HOH HOH . I 5 HOH A 26 175 175 HOH HOH . I 5 HOH A 27 176 176 HOH HOH . I 5 HOH A 28 177 177 HOH HOH . I 5 HOH A 29 178 178 HOH HOH . I 5 HOH A 30 179 179 HOH HOH . I 5 HOH A 31 180 180 HOH HOH . I 5 HOH A 32 181 181 HOH HOH . I 5 HOH A 33 182 182 HOH HOH . I 5 HOH A 34 183 183 HOH HOH . I 5 HOH A 35 184 184 HOH HOH . I 5 HOH A 36 185 185 HOH HOH . I 5 HOH A 37 186 186 HOH HOH . I 5 HOH A 38 187 187 HOH HOH . I 5 HOH A 39 188 188 HOH HOH . J 5 HOH B 1 149 149 HOH HOH . J 5 HOH B 2 150 150 HOH HOH . J 5 HOH B 3 152 152 HOH HOH . J 5 HOH B 4 153 153 HOH HOH . J 5 HOH B 5 154 154 HOH HOH . J 5 HOH B 6 155 155 HOH HOH . J 5 HOH B 7 156 156 HOH HOH . J 5 HOH B 8 157 157 HOH HOH . J 5 HOH B 9 158 158 HOH HOH . J 5 HOH B 10 159 159 HOH HOH . J 5 HOH B 11 160 160 HOH HOH . J 5 HOH B 12 161 161 HOH HOH . J 5 HOH B 13 162 162 HOH HOH . J 5 HOH B 14 163 163 HOH HOH . J 5 HOH B 15 164 164 HOH HOH . J 5 HOH B 16 165 165 HOH HOH . J 5 HOH B 17 166 166 HOH HOH . J 5 HOH B 18 167 167 HOH HOH . J 5 HOH B 19 168 168 HOH HOH . J 5 HOH B 20 169 169 HOH HOH . J 5 HOH B 21 170 170 HOH HOH . J 5 HOH B 22 171 171 HOH HOH . J 5 HOH B 23 172 172 HOH HOH . J 5 HOH B 24 173 173 HOH HOH . J 5 HOH B 25 174 174 HOH HOH . J 5 HOH B 26 175 175 HOH HOH . J 5 HOH B 27 176 176 HOH HOH . J 5 HOH B 28 177 177 HOH HOH . J 5 HOH B 29 178 178 HOH HOH . J 5 HOH B 30 179 179 HOH HOH . J 5 HOH B 31 180 180 HOH HOH . J 5 HOH B 32 181 181 HOH HOH . J 5 HOH B 33 182 182 HOH HOH . J 5 HOH B 34 183 183 HOH HOH . J 5 HOH B 35 184 184 HOH HOH . J 5 HOH B 36 185 185 HOH HOH . J 5 HOH B 37 186 186 HOH HOH . J 5 HOH B 38 187 187 HOH HOH . J 5 HOH B 39 188 188 HOH HOH . J 5 HOH B 40 189 189 HOH HOH . J 5 HOH B 41 190 190 HOH HOH . J 5 HOH B 42 191 191 HOH HOH . J 5 HOH B 43 192 192 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL1 7CL . . . H 4 16.085 6.252 18.327 1 69.7 ? CL1 7CL 151 B 1 HETATM 2 C C1 7CL . . . H 4 17.405 5.289 17.574 1 69.7 ? C1 7CL 151 B 1 HETATM 3 C C2 7CL . . . H 4 16.997 4.718 16.214 1 69.7 ? C2 7CL 151 B 1 HETATM 4 C C3 7CL . . . H 4 18.085 3.71 15.79 1 69.7 ? C3 7CL 151 B 1 HETATM 5 C C4 7CL . . . H 4 17.453 2.545 15.007 1 69.7 ? C4 7CL 151 B 1 HETATM 6 C C5 7CL . . . H 4 18.382 1.317 15.031 1 69.7 ? C5 7CL 151 B 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #