data_3G56
#
_model_server_result.job_id            3acdKjEQHNQu07TAFQ9EnA 
_model_server_result.datetime_utc      '2024-11-13 08:08:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3g56 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":196}' 
#
_entry.id    3G56 
#
_exptl.entry_id    3G56 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.87 
_cell.angle_gamma         90 
_cell.entry_id            3G56 
_cell.length_a            37.421 
_cell.length_b            113.761 
_cell.length_c            43.392 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3G56 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     3G56 
_atom_sites.fract_transf_matrix[1][1]    0.026723 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001808 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00879 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023098 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 195 195 EDO EDO . 
D 3 GOL A 1 196 196 GOL GOL . 
E 3 GOL B 1 195 195 GOL GOL . 
F 3 GOL B 1 196 196 GOL GOL . 
G 4 HOH A 1 197 197 HOH HOH . 
G 4 HOH A 2 198 198 HOH HOH . 
G 4 HOH A 3 199 199 HOH HOH . 
G 4 HOH A 4 200 200 HOH HOH . 
G 4 HOH A 5 203 203 HOH HOH . 
G 4 HOH A 6 206 206 HOH HOH . 
G 4 HOH A 7 207 207 HOH HOH . 
G 4 HOH A 8 208 208 HOH HOH . 
G 4 HOH A 9 212 212 HOH HOH . 
G 4 HOH A 10 218 218 HOH HOH . 
G 4 HOH A 11 224 224 HOH HOH . 
G 4 HOH A 12 227 227 HOH HOH . 
G 4 HOH A 13 228 228 HOH HOH . 
G 4 HOH A 14 229 229 HOH HOH . 
G 4 HOH A 15 230 230 HOH HOH . 
G 4 HOH A 16 231 231 HOH HOH . 
G 4 HOH A 17 233 233 HOH HOH . 
G 4 HOH A 18 235 235 HOH HOH . 
G 4 HOH A 19 243 243 HOH HOH . 
G 4 HOH A 20 246 246 HOH HOH . 
G 4 HOH A 21 257 257 HOH HOH . 
G 4 HOH A 22 258 258 HOH HOH . 
G 4 HOH A 23 259 259 HOH HOH . 
G 4 HOH A 24 260 260 HOH HOH . 
G 4 HOH A 25 261 261 HOH HOH . 
G 4 HOH A 26 262 262 HOH HOH . 
G 4 HOH A 27 266 266 HOH HOH . 
H 4 HOH B 1 197 197 HOH HOH . 
H 4 HOH B 2 198 198 HOH HOH . 
H 4 HOH B 3 199 199 HOH HOH . 
H 4 HOH B 4 201 201 HOH HOH . 
H 4 HOH B 5 202 202 HOH HOH . 
H 4 HOH B 6 204 204 HOH HOH . 
H 4 HOH B 7 205 205 HOH HOH . 
H 4 HOH B 8 210 210 HOH HOH . 
H 4 HOH B 9 211 211 HOH HOH . 
H 4 HOH B 10 213 213 HOH HOH . 
H 4 HOH B 11 214 214 HOH HOH . 
H 4 HOH B 12 215 215 HOH HOH . 
H 4 HOH B 13 216 216 HOH HOH . 
H 4 HOH B 14 217 217 HOH HOH . 
H 4 HOH B 15 219 219 HOH HOH . 
H 4 HOH B 16 220 220 HOH HOH . 
H 4 HOH B 17 221 221 HOH HOH . 
H 4 HOH B 18 222 222 HOH HOH . 
H 4 HOH B 19 223 223 HOH HOH . 
H 4 HOH B 20 225 225 HOH HOH . 
H 4 HOH B 21 226 226 HOH HOH . 
H 4 HOH B 22 241 241 HOH HOH . 
H 4 HOH B 23 244 244 HOH HOH . 
H 4 HOH B 24 245 245 HOH HOH . 
H 4 HOH B 25 247 247 HOH HOH . 
H 4 HOH B 26 250 250 HOH HOH . 
H 4 HOH B 27 253 253 HOH HOH . 
H 4 HOH B 28 256 256 HOH HOH . 
H 4 HOH B 29 263 263 HOH HOH . 
H 4 HOH B 30 270 270 HOH HOH . 
H 4 HOH B 31 272 272 HOH HOH . 
H 4 HOH B 32 278 278 HOH HOH . 
H 4 HOH B 33 280 280 HOH HOH . 
H 4 HOH B 34 282 282 HOH HOH . 
H 4 HOH B 35 283 283 HOH HOH . 
H 4 HOH B 36 285 285 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 29.466 -15.049 9.705 1 108.14 ? C1 GOL 196 A 1 
HETATM 2 O O1 GOL . . . D 3 28.258 -15.547 9.179 1 108.8 ? O1 GOL 196 A 1 
HETATM 3 C C2 GOL . . . D 3 29.662 -15.631 11.101 1 108.22 ? C2 GOL 196 A 1 
HETATM 4 O O2 GOL . . . D 3 30.337 -16.876 11.061 1 107.81 ? O2 GOL 196 A 1 
HETATM 5 C C3 GOL . . . D 3 30.343 -14.622 12.03 1 107.44 ? C3 GOL 196 A 1 
HETATM 6 O O3 GOL . . . D 3 29.869 -14.809 13.344 1 106.43 ? O3 GOL 196 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#