data_3G5D
#
_model_server_result.job_id            4los-Re8vjeRDqGv8AaFCg 
_model_server_result.datetime_utc      '2024-11-23 01:14:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3g5d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":534}' 
#
_entry.id    3G5D 
#
_exptl.entry_id    3G5D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         78.71 
_cell.angle_beta          89.96 
_cell.angle_gamma         90.28 
_cell.entry_id            3G5D 
_cell.length_a            42.19 
_cell.length_b            63.69 
_cell.length_c            74.58 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3G5D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 191 n n 
C1 C2 GOL sing 192 n n 
C1 H11 GOL sing 193 n n 
C1 H12 GOL sing 194 n n 
O1 HO1 GOL sing 195 n n 
C2 O2 GOL sing 196 n n 
C2 C3 GOL sing 197 n n 
C2 H2 GOL sing 198 n n 
O2 HO2 GOL sing 199 n n 
C3 O3 GOL sing 200 n n 
C3 H31 GOL sing 201 n n 
C3 H32 GOL sing 202 n n 
O3 HO3 GOL sing 203 n n 
#
_atom_sites.entry_id                     3G5D 
_atom_sites.fract_transf_matrix[1][1]    0.023702 
_atom_sites.fract_transf_matrix[1][2]    0.000117 
_atom_sites.fract_transf_matrix[1][3]    -0.000039 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015701 
_atom_sites.fract_transf_matrix[2][3]    -0.003133 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013673 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 1N1 A 1 1 1 1N1 DAS . 
D 3 GOL A 1 534 1 GOL GOL . 
E 2 1N1 B 1 1 1 1N1 DAS . 
F 3 GOL B 1 534 1 GOL GOL . 
G 4 HOH A 1 3 3 HOH HOH . 
G 4 HOH A 2 4 4 HOH HOH . 
G 4 HOH A 3 5 5 HOH HOH . 
G 4 HOH A 4 6 6 HOH HOH . 
G 4 HOH A 5 7 7 HOH HOH . 
G 4 HOH A 6 15 15 HOH HOH . 
G 4 HOH A 7 18 18 HOH HOH . 
G 4 HOH A 8 23 23 HOH HOH . 
G 4 HOH A 9 24 24 HOH HOH . 
G 4 HOH A 10 26 26 HOH HOH . 
G 4 HOH A 11 28 28 HOH HOH . 
G 4 HOH A 12 29 29 HOH HOH . 
G 4 HOH A 13 31 31 HOH HOH . 
G 4 HOH A 14 32 32 HOH HOH . 
G 4 HOH A 15 41 41 HOH HOH . 
G 4 HOH A 16 42 42 HOH HOH . 
G 4 HOH A 17 43 43 HOH HOH . 
G 4 HOH A 18 52 52 HOH HOH . 
G 4 HOH A 19 53 53 HOH HOH . 
G 4 HOH A 20 55 55 HOH HOH . 
G 4 HOH A 21 57 57 HOH HOH . 
G 4 HOH A 22 58 58 HOH HOH . 
G 4 HOH A 23 59 59 HOH HOH . 
G 4 HOH A 24 62 62 HOH HOH . 
G 4 HOH A 25 63 63 HOH HOH . 
G 4 HOH A 26 64 64 HOH HOH . 
G 4 HOH A 27 67 67 HOH HOH . 
G 4 HOH A 28 70 70 HOH HOH . 
G 4 HOH A 29 72 72 HOH HOH . 
G 4 HOH A 30 73 73 HOH HOH . 
G 4 HOH A 31 75 75 HOH HOH . 
G 4 HOH A 32 78 78 HOH HOH . 
G 4 HOH A 33 79 79 HOH HOH . 
G 4 HOH A 34 81 81 HOH HOH . 
G 4 HOH A 35 83 83 HOH HOH . 
G 4 HOH A 36 86 86 HOH HOH . 
G 4 HOH A 37 87 87 HOH HOH . 
G 4 HOH A 38 88 88 HOH HOH . 
G 4 HOH A 39 90 90 HOH HOH . 
G 4 HOH A 40 91 91 HOH HOH . 
G 4 HOH A 41 93 93 HOH HOH . 
G 4 HOH A 42 95 95 HOH HOH . 
G 4 HOH A 43 97 97 HOH HOH . 
G 4 HOH A 44 98 98 HOH HOH . 
G 4 HOH A 45 99 99 HOH HOH . 
G 4 HOH A 46 100 100 HOH HOH . 
G 4 HOH A 47 102 102 HOH HOH . 
G 4 HOH A 48 108 108 HOH HOH . 
G 4 HOH A 49 109 109 HOH HOH . 
G 4 HOH A 50 114 114 HOH HOH . 
G 4 HOH A 51 117 117 HOH HOH . 
G 4 HOH A 52 118 118 HOH HOH . 
G 4 HOH A 53 119 119 HOH HOH . 
G 4 HOH A 54 120 120 HOH HOH . 
G 4 HOH A 55 122 122 HOH HOH . 
G 4 HOH A 56 128 128 HOH HOH . 
G 4 HOH A 57 129 129 HOH HOH . 
G 4 HOH A 58 131 131 HOH HOH . 
G 4 HOH A 59 133 133 HOH HOH . 
G 4 HOH A 60 135 135 HOH HOH . 
G 4 HOH A 61 136 136 HOH HOH . 
G 4 HOH A 62 139 139 HOH HOH . 
G 4 HOH A 63 141 141 HOH HOH . 
G 4 HOH A 64 145 145 HOH HOH . 
G 4 HOH A 65 146 146 HOH HOH . 
G 4 HOH A 66 148 148 HOH HOH . 
G 4 HOH A 67 149 149 HOH HOH . 
G 4 HOH A 68 150 150 HOH HOH . 
G 4 HOH A 69 152 152 HOH HOH . 
G 4 HOH A 70 153 153 HOH HOH . 
G 4 HOH A 71 163 163 HOH HOH . 
G 4 HOH A 72 171 171 HOH HOH . 
G 4 HOH A 73 172 172 HOH HOH . 
G 4 HOH A 74 173 173 HOH HOH . 
G 4 HOH A 75 174 174 HOH HOH . 
G 4 HOH A 76 179 179 HOH HOH . 
G 4 HOH A 77 182 182 HOH HOH . 
G 4 HOH A 78 183 183 HOH HOH . 
G 4 HOH A 79 184 184 HOH HOH . 
G 4 HOH A 80 186 186 HOH HOH . 
G 4 HOH A 81 187 187 HOH HOH . 
G 4 HOH A 82 191 191 HOH HOH . 
G 4 HOH A 83 194 194 HOH HOH . 
G 4 HOH A 84 195 195 HOH HOH . 
G 4 HOH A 85 200 200 HOH HOH . 
G 4 HOH A 86 208 208 HOH HOH . 
G 4 HOH A 87 213 213 HOH HOH . 
G 4 HOH A 88 214 214 HOH HOH . 
G 4 HOH A 89 215 215 HOH HOH . 
G 4 HOH A 90 216 216 HOH HOH . 
G 4 HOH A 91 217 217 HOH HOH . 
G 4 HOH A 92 224 224 HOH HOH . 
G 4 HOH A 93 225 225 HOH HOH . 
G 4 HOH A 94 226 226 HOH HOH . 
G 4 HOH A 95 227 227 HOH HOH . 
G 4 HOH A 96 228 228 HOH HOH . 
G 4 HOH A 97 232 232 HOH HOH . 
G 4 HOH A 98 233 233 HOH HOH . 
G 4 HOH A 99 234 234 HOH HOH . 
G 4 HOH A 100 235 235 HOH HOH . 
G 4 HOH A 101 236 236 HOH HOH . 
G 4 HOH A 102 237 237 HOH HOH . 
G 4 HOH A 103 238 238 HOH HOH . 
G 4 HOH A 104 239 239 HOH HOH . 
G 4 HOH A 105 240 240 HOH HOH . 
G 4 HOH A 106 241 241 HOH HOH . 
G 4 HOH A 107 242 242 HOH HOH . 
G 4 HOH A 108 535 249 HOH HOH . 
G 4 HOH A 109 536 250 HOH HOH . 
G 4 HOH A 110 537 251 HOH HOH . 
G 4 HOH A 111 538 252 HOH HOH . 
G 4 HOH A 112 539 253 HOH HOH . 
G 4 HOH A 113 540 254 HOH HOH . 
G 4 HOH A 114 541 256 HOH HOH . 
H 4 HOH B 1 2 2 HOH HOH . 
H 4 HOH B 2 9 9 HOH HOH . 
H 4 HOH B 3 10 10 HOH HOH . 
H 4 HOH B 4 11 11 HOH HOH . 
H 4 HOH B 5 13 13 HOH HOH . 
H 4 HOH B 6 14 14 HOH HOH . 
H 4 HOH B 7 17 17 HOH HOH . 
H 4 HOH B 8 19 19 HOH HOH . 
H 4 HOH B 9 20 20 HOH HOH . 
H 4 HOH B 10 21 21 HOH HOH . 
H 4 HOH B 11 22 22 HOH HOH . 
H 4 HOH B 12 27 27 HOH HOH . 
H 4 HOH B 13 30 30 HOH HOH . 
H 4 HOH B 14 33 33 HOH HOH . 
H 4 HOH B 15 34 34 HOH HOH . 
H 4 HOH B 16 35 35 HOH HOH . 
H 4 HOH B 17 37 37 HOH HOH . 
H 4 HOH B 18 38 38 HOH HOH . 
H 4 HOH B 19 39 39 HOH HOH . 
H 4 HOH B 20 44 44 HOH HOH . 
H 4 HOH B 21 45 45 HOH HOH . 
H 4 HOH B 22 49 49 HOH HOH . 
H 4 HOH B 23 51 51 HOH HOH . 
H 4 HOH B 24 54 54 HOH HOH . 
H 4 HOH B 25 60 60 HOH HOH . 
H 4 HOH B 26 61 61 HOH HOH . 
H 4 HOH B 27 66 66 HOH HOH . 
H 4 HOH B 28 68 68 HOH HOH . 
H 4 HOH B 29 69 69 HOH HOH . 
H 4 HOH B 30 76 76 HOH HOH . 
H 4 HOH B 31 77 77 HOH HOH . 
H 4 HOH B 32 80 80 HOH HOH . 
H 4 HOH B 33 82 82 HOH HOH . 
H 4 HOH B 34 84 84 HOH HOH . 
H 4 HOH B 35 85 85 HOH HOH . 
H 4 HOH B 36 89 89 HOH HOH . 
H 4 HOH B 37 92 92 HOH HOH . 
H 4 HOH B 38 94 94 HOH HOH . 
H 4 HOH B 39 96 96 HOH HOH . 
H 4 HOH B 40 101 101 HOH HOH . 
H 4 HOH B 41 103 103 HOH HOH . 
H 4 HOH B 42 104 104 HOH HOH . 
H 4 HOH B 43 105 105 HOH HOH . 
H 4 HOH B 44 106 106 HOH HOH . 
H 4 HOH B 45 107 107 HOH HOH . 
H 4 HOH B 46 110 110 HOH HOH . 
H 4 HOH B 47 111 111 HOH HOH . 
H 4 HOH B 48 112 112 HOH HOH . 
H 4 HOH B 49 113 113 HOH HOH . 
H 4 HOH B 50 115 115 HOH HOH . 
H 4 HOH B 51 121 121 HOH HOH . 
H 4 HOH B 52 124 124 HOH HOH . 
H 4 HOH B 53 125 125 HOH HOH . 
H 4 HOH B 54 126 126 HOH HOH . 
H 4 HOH B 55 127 127 HOH HOH . 
H 4 HOH B 56 130 130 HOH HOH . 
H 4 HOH B 57 132 132 HOH HOH . 
H 4 HOH B 58 134 134 HOH HOH . 
H 4 HOH B 59 137 137 HOH HOH . 
H 4 HOH B 60 138 138 HOH HOH . 
H 4 HOH B 61 142 142 HOH HOH . 
H 4 HOH B 62 143 143 HOH HOH . 
H 4 HOH B 63 151 151 HOH HOH . 
H 4 HOH B 64 154 154 HOH HOH . 
H 4 HOH B 65 155 155 HOH HOH . 
H 4 HOH B 66 156 156 HOH HOH . 
H 4 HOH B 67 157 157 HOH HOH . 
H 4 HOH B 68 158 158 HOH HOH . 
H 4 HOH B 69 159 159 HOH HOH . 
H 4 HOH B 70 161 161 HOH HOH . 
H 4 HOH B 71 162 162 HOH HOH . 
H 4 HOH B 72 167 167 HOH HOH . 
H 4 HOH B 73 168 168 HOH HOH . 
H 4 HOH B 74 169 169 HOH HOH . 
H 4 HOH B 75 170 170 HOH HOH . 
H 4 HOH B 76 177 177 HOH HOH . 
H 4 HOH B 77 180 180 HOH HOH . 
H 4 HOH B 78 185 185 HOH HOH . 
H 4 HOH B 79 189 189 HOH HOH . 
H 4 HOH B 80 190 190 HOH HOH . 
H 4 HOH B 81 193 193 HOH HOH . 
H 4 HOH B 82 196 196 HOH HOH . 
H 4 HOH B 83 197 197 HOH HOH . 
H 4 HOH B 84 198 198 HOH HOH . 
H 4 HOH B 85 201 201 HOH HOH . 
H 4 HOH B 86 203 203 HOH HOH . 
H 4 HOH B 87 204 204 HOH HOH . 
H 4 HOH B 88 205 205 HOH HOH . 
H 4 HOH B 89 206 206 HOH HOH . 
H 4 HOH B 90 207 207 HOH HOH . 
H 4 HOH B 91 209 209 HOH HOH . 
H 4 HOH B 92 210 210 HOH HOH . 
H 4 HOH B 93 218 218 HOH HOH . 
H 4 HOH B 94 219 219 HOH HOH . 
H 4 HOH B 95 220 220 HOH HOH . 
H 4 HOH B 96 221 221 HOH HOH . 
H 4 HOH B 97 223 223 HOH HOH . 
H 4 HOH B 98 229 229 HOH HOH . 
H 4 HOH B 99 230 230 HOH HOH . 
H 4 HOH B 100 231 231 HOH HOH . 
H 4 HOH B 101 243 243 HOH HOH . 
H 4 HOH B 102 244 244 HOH HOH . 
H 4 HOH B 103 245 245 HOH HOH . 
H 4 HOH B 104 246 246 HOH HOH . 
H 4 HOH B 105 247 247 HOH HOH . 
H 4 HOH B 106 535 1 HOH HOH . 
H 4 HOH B 107 536 248 HOH HOH . 
H 4 HOH B 108 537 258 HOH HOH . 
H 4 HOH B 109 538 259 HOH HOH . 
H 4 HOH B 110 539 260 HOH HOH . 
H 4 HOH B 111 540 261 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 3 -7.512 10.022 14.452 1 45.77 ? C1 GOL 534 B 1 
HETATM 2 O O1 GOL . . . F 3 -7.007 11.126 15.178 1 48.48 ? O1 GOL 534 B 1 
HETATM 3 C C2 GOL . . . F 3 -7.411 8.707 15.223 1 44.57 ? C2 GOL 534 B 1 
HETATM 4 O O2 GOL . . . F 3 -8.713 8.24 15.523 1 45.66 ? O2 GOL 534 B 1 
HETATM 5 C C3 GOL . . . F 3 -6.526 8.761 16.474 1 41.65 ? C3 GOL 534 B 1 
HETATM 6 O O3 GOL . . . F 3 -6.71 7.593 17.27 1 38.33 ? O3 GOL 534 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#