data_3G5V # _model_server_result.job_id mIZPrRJjlQjQjQ1ArU5Qkw _model_server_result.datetime_utc '2024-11-22 08:28:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g5v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":702}' # _entry.id 3G5V # _exptl.entry_id 3G5V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.43 _cell.angle_gamma 90 _cell.entry_id 3G5V _cell.length_a 35.925 _cell.length_b 83.161 _cell.length_c 72.214 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G5V _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N ? 6 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf2 A SG CYS 134 A CYS 134 1_555 A SG CYS 194 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf4 B SG CYS 143 B CYS 143 1_555 B SG CYS 198 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 C SG CYS 1 C CYS 287 1_555 C SG CYS 16 C CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 89 n n C O2 FMT sing 90 n n C H FMT sing 91 n n O2 HO2 FMT sing 92 n n # _atom_sites.entry_id 3G5V _atom_sites.fract_transf_matrix[1][1] 0.027836 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001181 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012025 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ACT A 1 400 400 ACT ACT . E 4 ACT A 1 600 600 ACT ACT . F 5 GOL B 1 500 500 GOL GOL . G 6 FMT B 1 700 700 FMT FMT . H 6 FMT B 1 701 701 FMT FMT . I 6 FMT C 1 702 702 FMT FMT . J 7 HOH A 1 213 1 HOH HOH . J 7 HOH A 2 214 3 HOH HOH . J 7 HOH A 3 215 4 HOH HOH . J 7 HOH A 4 216 6 HOH HOH . J 7 HOH A 5 217 7 HOH HOH . J 7 HOH A 6 218 8 HOH HOH . J 7 HOH A 7 219 9 HOH HOH . J 7 HOH A 8 220 11 HOH HOH . J 7 HOH A 9 221 13 HOH HOH . J 7 HOH A 10 222 15 HOH HOH . J 7 HOH A 11 223 17 HOH HOH . J 7 HOH A 12 224 19 HOH HOH . J 7 HOH A 13 225 24 HOH HOH . J 7 HOH A 14 226 25 HOH HOH . J 7 HOH A 15 227 27 HOH HOH . J 7 HOH A 16 228 28 HOH HOH . J 7 HOH A 17 229 33 HOH HOH . J 7 HOH A 18 230 34 HOH HOH . J 7 HOH A 19 231 36 HOH HOH . J 7 HOH A 20 232 41 HOH HOH . J 7 HOH A 21 233 44 HOH HOH . J 7 HOH A 22 234 45 HOH HOH . J 7 HOH A 23 235 46 HOH HOH . J 7 HOH A 24 236 47 HOH HOH . J 7 HOH A 25 237 48 HOH HOH . J 7 HOH A 26 238 51 HOH HOH . J 7 HOH A 27 239 54 HOH HOH . J 7 HOH A 28 240 56 HOH HOH . J 7 HOH A 29 241 57 HOH HOH . J 7 HOH A 30 242 58 HOH HOH . J 7 HOH A 31 243 60 HOH HOH . J 7 HOH A 32 244 61 HOH HOH . J 7 HOH A 33 245 62 HOH HOH . J 7 HOH A 34 246 64 HOH HOH . J 7 HOH A 35 247 68 HOH HOH . J 7 HOH A 36 248 69 HOH HOH . J 7 HOH A 37 249 70 HOH HOH . J 7 HOH A 38 250 73 HOH HOH . J 7 HOH A 39 251 74 HOH HOH . J 7 HOH A 40 252 76 HOH HOH . J 7 HOH A 41 253 77 HOH HOH . J 7 HOH A 42 254 78 HOH HOH . J 7 HOH A 43 255 79 HOH HOH . J 7 HOH A 44 256 80 HOH HOH . J 7 HOH A 45 257 81 HOH HOH . J 7 HOH A 46 258 82 HOH HOH . J 7 HOH A 47 259 83 HOH HOH . J 7 HOH A 48 260 85 HOH HOH . J 7 HOH A 49 261 86 HOH HOH . J 7 HOH A 50 262 87 HOH HOH . J 7 HOH A 51 263 88 HOH HOH . J 7 HOH A 52 264 89 HOH HOH . J 7 HOH A 53 265 90 HOH HOH . J 7 HOH A 54 266 91 HOH HOH . J 7 HOH A 55 267 92 HOH HOH . J 7 HOH A 56 268 93 HOH HOH . J 7 HOH A 57 269 94 HOH HOH . J 7 HOH A 58 270 95 HOH HOH . J 7 HOH A 59 271 96 HOH HOH . J 7 HOH A 60 272 97 HOH HOH . J 7 HOH A 61 273 98 HOH HOH . J 7 HOH A 62 274 99 HOH HOH . J 7 HOH A 63 275 100 HOH HOH . J 7 HOH A 64 276 114 HOH HOH . J 7 HOH A 65 277 115 HOH HOH . J 7 HOH A 66 278 116 HOH HOH . J 7 HOH A 67 279 118 HOH HOH . J 7 HOH A 68 280 123 HOH HOH . J 7 HOH A 69 281 124 HOH HOH . J 7 HOH A 70 282 125 HOH HOH . J 7 HOH A 71 283 126 HOH HOH . J 7 HOH A 72 284 127 HOH HOH . J 7 HOH A 73 285 128 HOH HOH . J 7 HOH A 74 286 130 HOH HOH . J 7 HOH A 75 287 131 HOH HOH . J 7 HOH A 76 288 134 HOH HOH . J 7 HOH A 77 289 137 HOH HOH . J 7 HOH A 78 290 138 HOH HOH . J 7 HOH A 79 291 139 HOH HOH . J 7 HOH A 80 292 140 HOH HOH . J 7 HOH A 81 293 141 HOH HOH . J 7 HOH A 82 294 142 HOH HOH . J 7 HOH A 83 295 143 HOH HOH . J 7 HOH A 84 296 145 HOH HOH . J 7 HOH A 85 297 146 HOH HOH . J 7 HOH A 86 298 147 HOH HOH . J 7 HOH A 87 299 149 HOH HOH . J 7 HOH A 88 300 151 HOH HOH . J 7 HOH A 89 301 153 HOH HOH . J 7 HOH A 90 302 158 HOH HOH . J 7 HOH A 91 303 159 HOH HOH . J 7 HOH A 92 304 163 HOH HOH . J 7 HOH A 93 305 164 HOH HOH . J 7 HOH A 94 306 170 HOH HOH . J 7 HOH A 95 307 173 HOH HOH . J 7 HOH A 96 308 175 HOH HOH . J 7 HOH A 97 309 176 HOH HOH . J 7 HOH A 98 310 177 HOH HOH . J 7 HOH A 99 311 178 HOH HOH . J 7 HOH A 100 312 180 HOH HOH . J 7 HOH A 101 313 182 HOH HOH . J 7 HOH A 102 314 184 HOH HOH . J 7 HOH A 103 315 185 HOH HOH . J 7 HOH A 104 316 190 HOH HOH . J 7 HOH A 105 317 191 HOH HOH . J 7 HOH A 106 318 192 HOH HOH . J 7 HOH A 107 319 193 HOH HOH . J 7 HOH A 108 320 194 HOH HOH . J 7 HOH A 109 321 195 HOH HOH . J 7 HOH A 110 322 196 HOH HOH . J 7 HOH A 111 323 197 HOH HOH . J 7 HOH A 112 324 199 HOH HOH . K 7 HOH B 1 214 2 HOH HOH . K 7 HOH B 2 215 5 HOH HOH . K 7 HOH B 3 216 10 HOH HOH . K 7 HOH B 4 217 12 HOH HOH . K 7 HOH B 5 218 14 HOH HOH . K 7 HOH B 6 219 16 HOH HOH . K 7 HOH B 7 220 18 HOH HOH . K 7 HOH B 8 221 20 HOH HOH . K 7 HOH B 9 222 21 HOH HOH . K 7 HOH B 10 223 23 HOH HOH . K 7 HOH B 11 224 26 HOH HOH . K 7 HOH B 12 225 29 HOH HOH . K 7 HOH B 13 226 30 HOH HOH . K 7 HOH B 14 227 31 HOH HOH . K 7 HOH B 15 228 32 HOH HOH . K 7 HOH B 16 229 35 HOH HOH . K 7 HOH B 17 230 38 HOH HOH . K 7 HOH B 18 231 39 HOH HOH . K 7 HOH B 19 232 40 HOH HOH . K 7 HOH B 20 233 42 HOH HOH . K 7 HOH B 21 234 43 HOH HOH . K 7 HOH B 22 235 49 HOH HOH . K 7 HOH B 23 236 50 HOH HOH . K 7 HOH B 24 237 52 HOH HOH . K 7 HOH B 25 238 55 HOH HOH . K 7 HOH B 26 239 59 HOH HOH . K 7 HOH B 27 240 63 HOH HOH . K 7 HOH B 28 241 65 HOH HOH . K 7 HOH B 29 242 66 HOH HOH . K 7 HOH B 30 243 67 HOH HOH . K 7 HOH B 31 244 71 HOH HOH . K 7 HOH B 32 245 72 HOH HOH . K 7 HOH B 33 246 75 HOH HOH . K 7 HOH B 34 247 84 HOH HOH . K 7 HOH B 35 248 101 HOH HOH . K 7 HOH B 36 249 102 HOH HOH . K 7 HOH B 37 250 103 HOH HOH . K 7 HOH B 38 251 104 HOH HOH . K 7 HOH B 39 252 105 HOH HOH . K 7 HOH B 40 253 106 HOH HOH . K 7 HOH B 41 254 107 HOH HOH . K 7 HOH B 42 255 108 HOH HOH . K 7 HOH B 43 256 109 HOH HOH . K 7 HOH B 44 257 110 HOH HOH . K 7 HOH B 45 258 111 HOH HOH . K 7 HOH B 46 259 112 HOH HOH . K 7 HOH B 47 260 113 HOH HOH . K 7 HOH B 48 261 117 HOH HOH . K 7 HOH B 49 262 119 HOH HOH . K 7 HOH B 50 263 120 HOH HOH . K 7 HOH B 51 264 121 HOH HOH . K 7 HOH B 52 265 129 HOH HOH . K 7 HOH B 53 266 132 HOH HOH . K 7 HOH B 54 267 133 HOH HOH . K 7 HOH B 55 268 135 HOH HOH . K 7 HOH B 56 269 136 HOH HOH . K 7 HOH B 57 270 144 HOH HOH . K 7 HOH B 58 271 148 HOH HOH . K 7 HOH B 59 272 150 HOH HOH . K 7 HOH B 60 273 152 HOH HOH . K 7 HOH B 61 274 154 HOH HOH . K 7 HOH B 62 275 156 HOH HOH . K 7 HOH B 63 276 157 HOH HOH . K 7 HOH B 64 277 160 HOH HOH . K 7 HOH B 65 278 161 HOH HOH . K 7 HOH B 66 279 162 HOH HOH . K 7 HOH B 67 280 165 HOH HOH . K 7 HOH B 68 281 166 HOH HOH . K 7 HOH B 69 282 167 HOH HOH . K 7 HOH B 70 283 168 HOH HOH . K 7 HOH B 71 284 169 HOH HOH . K 7 HOH B 72 285 171 HOH HOH . K 7 HOH B 73 286 172 HOH HOH . K 7 HOH B 74 287 174 HOH HOH . K 7 HOH B 75 288 179 HOH HOH . K 7 HOH B 76 289 181 HOH HOH . K 7 HOH B 77 290 183 HOH HOH . K 7 HOH B 78 291 186 HOH HOH . K 7 HOH B 79 292 187 HOH HOH . K 7 HOH B 80 293 188 HOH HOH . K 7 HOH B 81 294 189 HOH HOH . K 7 HOH B 82 295 198 HOH HOH . L 7 HOH C 1 22 22 HOH HOH . L 7 HOH C 2 37 37 HOH HOH . L 7 HOH C 3 53 53 HOH HOH . L 7 HOH C 4 122 122 HOH HOH . L 7 HOH C 5 155 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . I 6 21.411 11.224 -15.427 1 55.54 ? C FMT 702 C 1 HETATM 2 O O1 FMT . . . I 6 20.849 12.269 -15.094 1 55.61 ? O1 FMT 702 C 1 HETATM 3 O O2 FMT . . . I 6 22.161 11.127 -16.399 1 55.58 ? O2 FMT 702 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 3 #