data_3G6O # _model_server_result.job_id AwNgwjmavvsAVEP24lRpqw _model_server_result.datetime_utc '2024-12-01 11:36:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g6o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":900}' # _entry.id 3G6O # _exptl.entry_id 3G6O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 582.646 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BILIVERDINE IX ALPHA' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3G6O _cell.length_a 109.786 _cell.length_b 109.786 _cell.length_c 189.113 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G6O _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 12 A CYS 12 1_555 C CBC BLA . A BLA 900 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.659 ? covale ? covale2 A SG CYS 12 A CYS 12 1_555 C CBC BLA . A BLA 900 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.66 ? covale ? covale3 B SG CYS 12 B CYS 12 1_555 D CBC BLA . B BLA 900 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.662 ? covale ? covale4 B SG CYS 12 B CYS 12 1_555 D CBC BLA . B BLA 900 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.663 ? # _chem_comp.formula 'C33 H34 N4 O6' _chem_comp.formula_weight 582.646 _chem_comp.id BLA _chem_comp.mon_nstd_flag . _chem_comp.name 'BILIVERDINE IX ALPHA' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A BLA sing 70 n n CHA C4D BLA doub 71 z n CHA HHA BLA sing 72 n n NA C1A BLA sing 73 n y NA C4A BLA sing 74 n y NA HA BLA sing 75 n n C1A C2A BLA doub 76 n y C2A C3A BLA sing 77 n y C2A CAA BLA sing 78 n n C3A C4A BLA doub 79 n y C3A CMA BLA sing 80 n n C4A CHB BLA sing 81 n n CMA HMA1 BLA sing 82 n n CMA HMA2 BLA sing 83 n n CMA HMA3 BLA sing 84 n n CAA CBA BLA sing 85 n n CAA HAA1 BLA sing 86 n n CAA HAA2 BLA sing 87 n n CBA CGA BLA sing 88 n n CBA HBA1 BLA sing 89 n n CBA HBA2 BLA sing 90 n n CGA O1A BLA doub 91 n n CGA O2A BLA sing 92 n n O2A H2A BLA sing 93 n n CHB C1B BLA doub 94 z n CHB HHB BLA sing 95 n n NB C1B BLA sing 96 n n NB C4B BLA sing 97 n n NB HB BLA sing 98 n n C1B C2B BLA sing 99 n n C2B C3B BLA doub 100 n n C2B CMB BLA sing 101 n n C3B C4B BLA sing 102 n n C3B CAB BLA sing 103 n n C4B OB BLA doub 104 n n CMB HMB1 BLA sing 105 n n CMB HMB2 BLA sing 106 n n CMB HMB3 BLA sing 107 n n CAB CBB BLA doub 108 n n CAB HAB BLA sing 109 n n CBB HBB1 BLA sing 110 n n CBB HBB2 BLA sing 111 n n NC C1C BLA sing 112 n n NC C4C BLA sing 113 n n NC HC BLA sing 114 n n C1C C2C BLA sing 115 n n C1C OC BLA doub 116 n n C2C C3C BLA doub 117 n n C2C CMC BLA sing 118 n n C3C C4C BLA sing 119 n n C3C CAC BLA sing 120 n n C4C CHD BLA doub 121 z n CMC HMC1 BLA sing 122 n n CMC HMC2 BLA sing 123 n n CMC HMC3 BLA sing 124 n n CAC CBC BLA doub 125 n n CAC HAC BLA sing 126 n n CBC HBC1 BLA sing 127 n n CBC HBC2 BLA sing 128 n n CHD C1D BLA sing 129 n n CHD HHD BLA sing 130 n n ND C1D BLA doub 131 n n ND C4D BLA sing 132 n n C1D C2D BLA sing 133 n n C2D C3D BLA doub 134 n n C2D CMD BLA sing 135 n n C3D C4D BLA sing 136 n n C3D CAD BLA sing 137 n n CMD HMD1 BLA sing 138 n n CMD HMD2 BLA sing 139 n n CMD HMD3 BLA sing 140 n n CAD CBD BLA sing 141 n n CAD HAD1 BLA sing 142 n n CAD HAD2 BLA sing 143 n n CBD CGD BLA sing 144 n n CBD HBD1 BLA sing 145 n n CBD HBD2 BLA sing 146 n n CGD O1D BLA doub 147 n n CGD O2D BLA sing 148 n n O2D H2D BLA sing 149 n n # _atom_sites.entry_id 3G6O _atom_sites.fract_transf_matrix[1][1] 0.009109 _atom_sites.fract_transf_matrix[1][2] 0.005259 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010518 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005288 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BLA A 1 900 900 BLA BLA . D 2 BLA B 1 900 900 BLA BLA . E 3 HOH A 1 506 506 HOH HOH . F 3 HOH B 1 506 506 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA BLA . A . C 2 57.69 60.173 16.771 0.67 133.79 ? CHA BLA 900 A 1 HETATM 2 C CHA BLA . B . C 2 58.494 59.796 15.792 0.33 132.4 ? CHA BLA 900 A 1 HETATM 3 N NA BLA . A . C 2 56.855 62.067 18.109 0.67 132.57 ? NA BLA 900 A 1 HETATM 4 N NA BLA . B . C 2 57.322 60.845 17.678 0.33 130.8 ? NA BLA 900 A 1 HETATM 5 C C1A BLA . A . C 2 56.914 60.786 17.747 0.67 130.15 ? C1A BLA 900 A 1 HETATM 6 C C1A BLA . B . C 2 57.708 59.803 16.939 0.33 130.04 ? C1A BLA 900 A 1 HETATM 7 C C2A BLA . A . C 2 56.012 60.058 18.519 0.67 124.19 ? C2A BLA 900 A 1 HETATM 8 C C2A BLA . B . C 2 57.173 58.628 17.487 0.33 117.6 ? C2A BLA 900 A 1 HETATM 9 C C3A BLA . A . C 2 55.423 60.988 19.36 0.67 126.53 ? C3A BLA 900 A 1 HETATM 10 C C3A BLA . B . C 2 56.452 59.056 18.592 0.33 119.72 ? C3A BLA 900 A 1 HETATM 11 C C4A BLA . A . C 2 55.969 62.236 19.084 0.67 128.96 ? C4A BLA 900 A 1 HETATM 12 C C4A BLA . B . C 2 56.567 60.434 18.687 0.33 126.41 ? C4A BLA 900 A 1 HETATM 13 C CMA BLA . A . C 2 54.346 60.682 20.407 0.67 122.49 ? CMA BLA 900 A 1 HETATM 14 C CMA BLA . B . C 2 55.67 58.169 19.554 0.33 120.63 ? CMA BLA 900 A 1 HETATM 15 C CAA BLA . A . C 2 55.733 58.554 18.417 0.67 116.07 ? CAA BLA 900 A 1 HETATM 16 C CAA BLA . B . C 2 57.336 57.196 16.951 0.33 103.53 ? CAA BLA 900 A 1 HETATM 17 C CBA BLA . A . C 2 56.715 57.656 19.156 0.67 118.57 ? CBA BLA 900 A 1 HETATM 18 C CBA BLA . B . C 2 58.569 56.407 17.402 0.33 98.37 ? CBA BLA 900 A 1 HETATM 19 C CGA BLA . A . C 2 56.693 57.914 20.658 0.67 132.73 ? CGA BLA 900 A 1 HETATM 20 C CGA BLA . B . C 2 58.569 56.153 18.906 0.33 93.48 ? CGA BLA 900 A 1 HETATM 21 O O1A BLA . A . C 2 57.776 57.778 21.268 0.67 141.87 ? O1A BLA 900 A 1 HETATM 22 O O1A BLA . B . C 2 59.672 56.205 19.481 0.33 92.7 ? O1A BLA 900 A 1 HETATM 23 O O2A BLA . A . C 2 55.58 58.183 21.16 0.67 137.93 ? O2A BLA 900 A 1 HETATM 24 O O2A BLA . B . C 2 57.474 55.861 19.427 0.33 85.14 ? O2A BLA 900 A 1 HETATM 25 C CHB BLA . A . C 2 55.653 63.568 19.759 0.67 128.23 ? CHB BLA 900 A 1 HETATM 26 C CHB BLA . B . C 2 55.956 61.341 19.723 0.33 125.45 ? CHB BLA 900 A 1 HETATM 27 N NB BLA . A . C 2 54.791 64.948 21.718 0.67 145.27 ? NB BLA 900 A 1 HETATM 28 N NB BLA . B . C 2 56.498 60.253 21.956 0.33 123.11 ? NB BLA 900 A 1 HETATM 29 C C1B BLA . A . C 2 55.387 63.848 21.239 0.67 137.61 ? C1B BLA 900 A 1 HETATM 30 C C1B BLA . B . C 2 56.061 61.287 21.229 0.33 123.62 ? C1B BLA 900 A 1 HETATM 31 C C2B BLA . A . C 2 55.699 63.033 22.33 0.67 129.27 ? C2B BLA 900 A 1 HETATM 32 C C2B BLA . B . C 2 55.709 62.312 22.09 0.33 126.89 ? C2B BLA 900 A 1 HETATM 33 C C3B BLA . A . C 2 55.263 63.667 23.466 0.67 129.23 ? C3B BLA 900 A 1 HETATM 34 C C3B BLA . B . C 2 55.95 61.871 23.372 0.33 121.88 ? C3B BLA 900 A 1 HETATM 35 C C4B BLA . A . C 2 54.706 64.867 23.052 0.67 148.11 ? C4B BLA 900 A 1 HETATM 36 C C4B BLA . B . C 2 56.441 60.585 23.247 0.33 122.15 ? C4B BLA 900 A 1 HETATM 37 C CMB BLA . A . C 2 56.383 61.669 22.332 0.67 125.2 ? CMB BLA 900 A 1 HETATM 38 C CMB BLA . B . C 2 55.165 63.674 21.659 0.33 135.65 ? CMB BLA 900 A 1 HETATM 39 O OB BLA . A . C 2 54.21 65.728 23.779 0.67 160.8 ? OB BLA 900 A 1 HETATM 40 O OB BLA . B . C 2 56.768 59.857 24.18 0.33 118.71 ? OB BLA 900 A 1 HETATM 41 C CAB BLA . A . C 2 55.39 63.173 24.755 0.67 128.63 ? CAB BLA 900 A 1 HETATM 42 C CAB BLA . B . C 2 55.741 62.581 24.546 0.33 124.21 ? CAB BLA 900 A 1 HETATM 43 C CBB BLA . A . C 2 54.917 63.883 25.848 0.67 135.74 ? CBB BLA 900 A 1 HETATM 44 C CBB BLA . B . C 2 56.035 61.997 25.773 0.33 129.45 ? CBB BLA 900 A 1 HETATM 45 N NC BLA . A . C 2 59.421 65.047 16.793 0.67 169.19 ? NC BLA 900 A 1 HETATM 46 N NC BLA . B . C 2 59.302 64.466 16.973 0.33 169.02 ? NC BLA 900 A 1 HETATM 47 C C1C BLA . A . C 2 59.004 66.254 17.141 0.67 170.69 ? C1C BLA 900 A 1 HETATM 48 C C1C BLA . B . C 2 58.985 65.311 17.942 0.33 171.2 ? C1C BLA 900 A 1 HETATM 49 C C2C BLA . A . C 2 59.147 67.118 16.077 0.67 169.09 ? C2C BLA 900 A 1 HETATM 50 C C2C BLA . B . C 2 59.017 66.595 17.441 0.33 170.14 ? C2C BLA 900 A 1 HETATM 51 C C3C BLA . A . C 2 59.68 66.386 15.018 0.67 169.3 ? C3C BLA 900 A 1 HETATM 52 C C3C BLA . B . C 2 59.372 66.52 16.104 0.33 169.06 ? C3C BLA 900 A 1 HETATM 53 C C4C BLA . A . C 2 59.837 65.086 15.524 0.67 162.84 ? C4C BLA 900 A 1 HETATM 54 C C4C BLA . B . C 2 59.546 65.15 15.854 0.33 165.93 ? C4C BLA 900 A 1 HETATM 55 C CMC BLA . A . C 2 58.76 68.597 16.134 0.67 167.12 ? CMC BLA 900 A 1 HETATM 56 C CMC BLA . B . C 2 58.714 67.866 18.23 0.33 168.61 ? CMC BLA 900 A 1 HETATM 57 O OC BLA . A . C 2 58.562 66.556 18.247 0.67 172.26 ? OC BLA 900 A 1 HETATM 58 O OC BLA . B . C 2 58.703 64.988 19.093 0.33 173.83 ? OC BLA 900 A 1 HETATM 59 C CAC BLA . A . C 2 60.043 66.845 13.591 0.67 176.18 ? CAC BLA 900 A 1 HETATM 60 C CAC BLA . B . C 2 59.535 67.72 15.156 0.33 170.26 ? CAC BLA 900 A 1 HETATM 61 C CBC BLA . A . C 2 59.665 68.298 13.266 0.67 177.26 ? CBC BLA 900 A 1 HETATM 62 C CBC BLA . B . C 2 58.994 67.437 13.752 0.33 173.6 ? CBC BLA 900 A 1 HETATM 63 C CHD BLA . A . C 2 60.387 63.855 14.801 0.67 147.58 ? CHD BLA 900 A 1 HETATM 64 C CHD BLA . B . C 2 59.938 64.432 14.565 0.33 153.96 ? CHD BLA 900 A 1 HETATM 65 N ND BLA . A . C 2 58.879 62.201 16.002 0.67 130.64 ? ND BLA 900 A 1 HETATM 66 N ND BLA . B . C 2 59.028 62.211 15.459 0.33 132.8 ? ND BLA 900 A 1 HETATM 67 C C1D BLA . A . C 2 59.81 62.475 15.087 0.67 133.64 ? C1D BLA 900 A 1 HETATM 68 C C1D BLA . B . C 2 59.738 62.914 14.567 0.33 138.14 ? C1D BLA 900 A 1 HETATM 69 C C2D BLA . A . C 2 60.13 61.29 14.462 0.67 128.15 ? C2D BLA 900 A 1 HETATM 70 C C2D BLA . B . C 2 60.248 62.008 13.665 0.33 128.67 ? C2D BLA 900 A 1 HETATM 71 C C3D BLA . A . C 2 59.36 60.283 15.019 0.67 128.16 ? C3D BLA 900 A 1 HETATM 72 C C3D BLA . B . C 2 59.83 60.741 14.031 0.33 127.99 ? C3D BLA 900 A 1 HETATM 73 C C4D BLA . A . C 2 58.586 60.9 15.997 0.67 133.28 ? C4D BLA 900 A 1 HETATM 74 C C4D BLA . B . C 2 59.062 60.906 15.175 0.33 130.53 ? C4D BLA 900 A 1 HETATM 75 C CMD BLA . A . C 2 61.157 61.139 13.339 0.67 127.39 ? CMD BLA 900 A 1 HETATM 76 C CMD BLA . B . C 2 61.127 62.363 12.464 0.33 125.65 ? CMD BLA 900 A 1 HETATM 77 C CAD BLA . A . C 2 59.418 58.801 14.634 0.67 113.3 ? CAD BLA 900 A 1 HETATM 78 C CAD BLA . B . C 2 60.182 59.433 13.295 0.33 128.72 ? CAD BLA 900 A 1 HETATM 79 C CBD BLA . A . C 2 60.822 58.308 15.018 0.67 97.07 ? CBD BLA 900 A 1 HETATM 80 C CBD BLA . B . C 2 61.68 59.164 13.428 0.33 129.11 ? CBD BLA 900 A 1 HETATM 81 C CGD BLA . A . C 2 61.043 56.834 14.708 0.67 103.34 ? CGD BLA 900 A 1 HETATM 82 C CGD BLA . B . C 2 62.069 57.882 12.702 0.33 127.81 ? CGD BLA 900 A 1 HETATM 83 O O1D BLA . A . C 2 61.514 56.552 13.583 0.67 125.85 ? O1D BLA 900 A 1 HETATM 84 O O1D BLA . B . C 2 61.451 56.84 13.018 0.33 130.93 ? O1D BLA 900 A 1 HETATM 85 O O2D BLA . A . C 2 60.74 56.032 15.616 0.67 92.47 ? O2D BLA 900 A 1 HETATM 86 O O2D BLA . B . C 2 62.976 57.971 11.844 0.33 121.88 ? O2D BLA 900 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 86 #