data_3G6O # _model_server_result.job_id rmG3GB4v6B-oN_n3ZO0dlA _model_server_result.datetime_utc '2024-12-03 03:41:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g6o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":900}' # _entry.id 3G6O # _exptl.entry_id 3G6O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 582.646 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BILIVERDINE IX ALPHA' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3G6O _cell.length_a 109.786 _cell.length_b 109.786 _cell.length_c 189.113 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G6O _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 12 A CYS 12 1_555 C CBC BLA . A BLA 900 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.659 ? covale ? covale2 A SG CYS 12 A CYS 12 1_555 C CBC BLA . A BLA 900 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.66 ? covale ? covale3 B SG CYS 12 B CYS 12 1_555 D CBC BLA . B BLA 900 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.662 ? covale ? covale4 B SG CYS 12 B CYS 12 1_555 D CBC BLA . B BLA 900 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.663 ? # _chem_comp.formula 'C33 H34 N4 O6' _chem_comp.formula_weight 582.646 _chem_comp.id BLA _chem_comp.mon_nstd_flag . _chem_comp.name 'BILIVERDINE IX ALPHA' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A BLA sing 70 n n CHA C4D BLA doub 71 z n CHA HHA BLA sing 72 n n NA C1A BLA sing 73 n y NA C4A BLA sing 74 n y NA HA BLA sing 75 n n C1A C2A BLA doub 76 n y C2A C3A BLA sing 77 n y C2A CAA BLA sing 78 n n C3A C4A BLA doub 79 n y C3A CMA BLA sing 80 n n C4A CHB BLA sing 81 n n CMA HMA1 BLA sing 82 n n CMA HMA2 BLA sing 83 n n CMA HMA3 BLA sing 84 n n CAA CBA BLA sing 85 n n CAA HAA1 BLA sing 86 n n CAA HAA2 BLA sing 87 n n CBA CGA BLA sing 88 n n CBA HBA1 BLA sing 89 n n CBA HBA2 BLA sing 90 n n CGA O1A BLA doub 91 n n CGA O2A BLA sing 92 n n O2A H2A BLA sing 93 n n CHB C1B BLA doub 94 z n CHB HHB BLA sing 95 n n NB C1B BLA sing 96 n n NB C4B BLA sing 97 n n NB HB BLA sing 98 n n C1B C2B BLA sing 99 n n C2B C3B BLA doub 100 n n C2B CMB BLA sing 101 n n C3B C4B BLA sing 102 n n C3B CAB BLA sing 103 n n C4B OB BLA doub 104 n n CMB HMB1 BLA sing 105 n n CMB HMB2 BLA sing 106 n n CMB HMB3 BLA sing 107 n n CAB CBB BLA doub 108 n n CAB HAB BLA sing 109 n n CBB HBB1 BLA sing 110 n n CBB HBB2 BLA sing 111 n n NC C1C BLA sing 112 n n NC C4C BLA sing 113 n n NC HC BLA sing 114 n n C1C C2C BLA sing 115 n n C1C OC BLA doub 116 n n C2C C3C BLA doub 117 n n C2C CMC BLA sing 118 n n C3C C4C BLA sing 119 n n C3C CAC BLA sing 120 n n C4C CHD BLA doub 121 z n CMC HMC1 BLA sing 122 n n CMC HMC2 BLA sing 123 n n CMC HMC3 BLA sing 124 n n CAC CBC BLA doub 125 n n CAC HAC BLA sing 126 n n CBC HBC1 BLA sing 127 n n CBC HBC2 BLA sing 128 n n CHD C1D BLA sing 129 n n CHD HHD BLA sing 130 n n ND C1D BLA doub 131 n n ND C4D BLA sing 132 n n C1D C2D BLA sing 133 n n C2D C3D BLA doub 134 n n C2D CMD BLA sing 135 n n C3D C4D BLA sing 136 n n C3D CAD BLA sing 137 n n CMD HMD1 BLA sing 138 n n CMD HMD2 BLA sing 139 n n CMD HMD3 BLA sing 140 n n CAD CBD BLA sing 141 n n CAD HAD1 BLA sing 142 n n CAD HAD2 BLA sing 143 n n CBD CGD BLA sing 144 n n CBD HBD1 BLA sing 145 n n CBD HBD2 BLA sing 146 n n CGD O1D BLA doub 147 n n CGD O2D BLA sing 148 n n O2D H2D BLA sing 149 n n # _atom_sites.entry_id 3G6O _atom_sites.fract_transf_matrix[1][1] 0.009109 _atom_sites.fract_transf_matrix[1][2] 0.005259 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010518 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005288 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BLA A 1 900 900 BLA BLA . D 2 BLA B 1 900 900 BLA BLA . E 3 HOH A 1 506 506 HOH HOH . F 3 HOH B 1 506 506 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA BLA . A . D 2 31.502 14.7 14.905 0.67 120.85 ? CHA BLA 900 B 1 HETATM 2 C CHA BLA . B . D 2 32.209 14.082 15.941 0.33 119.64 ? CHA BLA 900 B 1 HETATM 3 N NA BLA . A . D 2 29.447 14.407 13.577 0.67 125.11 ? NA BLA 900 B 1 HETATM 4 N NA BLA . B . D 2 30.752 14.566 14.019 0.33 120.84 ? NA BLA 900 B 1 HETATM 5 C C1A BLA . A . D 2 30.581 15.023 13.924 0.67 120.68 ? C1A BLA 900 B 1 HETATM 6 C C1A BLA . B . D 2 31.826 14.751 14.781 0.33 118.76 ? C1A BLA 900 B 1 HETATM 7 C C2A BLA . A . D 2 30.771 16.147 13.126 0.67 114.97 ? C2A BLA 900 B 1 HETATM 8 C C2A BLA . B . D 2 32.576 15.819 14.268 0.33 109.84 ? C2A BLA 900 B 1 HETATM 9 C C3A BLA . A . D 2 29.667 16.162 12.283 0.67 111.74 ? C3A BLA 900 B 1 HETATM 10 C C3A BLA . B . D 2 31.879 16.221 13.141 0.33 112.21 ? C3A BLA 900 B 1 HETATM 11 C C4A BLA . A . D 2 28.861 15.065 12.583 0.67 117.38 ? C4A BLA 900 B 1 HETATM 12 C C4A BLA . B . D 2 30.748 15.424 13.011 0.33 116.02 ? C4A BLA 900 B 1 HETATM 13 C CMA BLA . A . D 2 29.393 17.214 11.212 0.67 103.5 ? CMA BLA 900 B 1 HETATM 14 C CMA BLA . B . D 2 32.272 17.349 12.192 0.33 115.13 ? CMA BLA 900 B 1 HETATM 15 C CAA BLA . A . D 2 31.952 17.133 13.26 0.67 106.75 ? CAA BLA 900 B 1 HETATM 16 C CAA BLA . B . D 2 33.898 16.382 14.829 0.33 101.5 ? CAA BLA 900 B 1 HETATM 17 C CBA BLA . A . D 2 33.251 16.824 12.511 0.67 114.82 ? CBA BLA 900 B 1 HETATM 18 C CBA BLA . B . D 2 35.178 16.057 14.053 0.33 94.55 ? CBA BLA 900 B 1 HETATM 19 C CGA BLA . A . D 2 33.09 16.846 10.991 0.67 129.03 ? CGA BLA 900 B 1 HETATM 20 C CGA BLA . B . D 2 35.202 16.635 12.636 0.33 91.63 ? CGA BLA 900 B 1 HETATM 21 O O1A BLA . A . D 2 32.292 17.683 10.517 0.67 130.18 ? O1A BLA 900 B 1 HETATM 22 O O1A BLA . B . D 2 35.009 15.841 11.689 0.33 97.54 ? O1A BLA 900 B 1 HETATM 23 O O2A BLA . A . D 2 33.815 16.072 10.327 0.67 136.56 ? O2A BLA 900 B 1 HETATM 24 O O2A BLA . B . D 2 35.458 17.856 12.53 0.33 79.11 ? O2A BLA 900 B 1 HETATM 25 C CHB BLA . A . D 2 27.554 14.643 11.922 0.67 116.74 ? CHB BLA 900 B 1 HETATM 26 C CHB BLA . B . D 2 29.683 15.503 11.931 0.33 111.82 ? CHB BLA 900 B 1 HETATM 27 N NB BLA . A . D 2 25.961 15.138 9.99 0.67 136.03 ? NB BLA 900 B 1 HETATM 28 N NB BLA . B . D 2 30.873 16.324 9.818 0.33 106.49 ? NB BLA 900 B 1 HETATM 29 C C1B BLA . A . D 2 27.188 14.895 10.466 0.67 127.73 ? C1B BLA 900 B 1 HETATM 30 C C1B BLA . B . D 2 29.785 15.902 10.474 0.33 108.53 ? C1B BLA 900 B 1 HETATM 31 C C2B BLA . A . D 2 28.082 14.923 9.395 0.67 122.19 ? C2B BLA 900 B 1 HETATM 32 C C2B BLA . B . D 2 28.731 15.89 9.576 0.33 114.16 ? C2B BLA 900 B 1 HETATM 33 C C3B BLA . A . D 2 27.369 15.194 8.257 0.67 126.23 ? C3B BLA 900 B 1 HETATM 34 C C3B BLA . B . D 2 29.201 16.322 8.351 0.33 99.47 ? C3B BLA 900 B 1 HETATM 35 C C4B BLA . A . D 2 26.048 15.316 8.66 0.67 141.86 ? C4B BLA 900 B 1 HETATM 36 C C4B BLA . B . D 2 30.546 16.582 8.543 0.33 105.08 ? C4B BLA 900 B 1 HETATM 37 C CMB BLA . A . D 2 29.593 14.701 9.44 0.67 119.38 ? CMB BLA 900 B 1 HETATM 38 C CMB BLA . B . D 2 27.307 15.475 9.916 0.33 125.59 ? CMB BLA 900 B 1 HETATM 39 O OB BLA . A . D 2 25.096 15.558 7.916 0.67 151.65 ? OB BLA 900 B 1 HETATM 40 O OB BLA . B . D 2 31.321 16.986 7.677 0.33 108.22 ? OB BLA 900 B 1 HETATM 41 C CAB BLA . A . D 2 27.892 15.303 6.976 0.67 124.21 ? CAB BLA 900 B 1 HETATM 42 C CAB BLA . B . D 2 28.476 16.461 7.176 0.33 101.22 ? CAB BLA 900 B 1 HETATM 43 C CBB BLA . A . D 2 27.09 15.583 5.884 0.67 138 ? CBB BLA 900 B 1 HETATM 44 C CBB BLA . B . D 2 29.092 16.91 6.021 0.33 96.94 ? CBB BLA 900 B 1 HETATM 45 N NC BLA . A . D 2 28.244 10.655 14.996 0.67 146.79 ? NC BLA 900 B 1 HETATM 46 N NC BLA . B . D 2 27.743 10.681 14.811 0.33 146.17 ? NC BLA 900 B 1 HETATM 47 C C1C BLA . A . D 2 26.985 10.435 14.65 0.67 145.95 ? C1C BLA 900 B 1 HETATM 48 C C1C BLA . B . D 2 26.58 10.344 14.261 0.33 144.18 ? C1C BLA 900 B 1 HETATM 49 C C2C BLA . A . D 2 26.276 10.027 15.762 0.67 147.1 ? C2C BLA 900 B 1 HETATM 50 C C2C BLA . B . D 2 25.788 9.724 15.203 0.33 146.09 ? C2C BLA 900 B 1 HETATM 51 C C3C BLA . A . D 2 27.163 10.002 16.839 0.67 149.17 ? C3C BLA 900 B 1 HETATM 52 C C3C BLA . B . D 2 26.516 9.685 16.388 0.33 150.53 ? C3C BLA 900 B 1 HETATM 53 C C4C BLA . A . D 2 28.395 10.404 16.298 0.67 143.51 ? C4C BLA 900 B 1 HETATM 54 C C4C BLA . B . D 2 27.738 10.299 16.092 0.33 145.98 ? C4C BLA 900 B 1 HETATM 55 C CMC BLA . A . D 2 24.781 9.679 15.738 0.67 144.73 ? CMC BLA 900 B 1 HETATM 56 C CMC BLA . B . D 2 24.376 9.194 14.93 0.33 143.23 ? CMC BLA 900 B 1 HETATM 57 O OC BLA . A . D 2 26.53 10.575 13.515 0.67 141.57 ? OC BLA 900 B 1 HETATM 58 O OC BLA . B . D 2 26.255 10.551 13.096 0.33 140.25 ? OC BLA 900 B 1 HETATM 59 C CAC BLA . A . D 2 26.899 9.614 18.31 0.67 159.05 ? CAC BLA 900 B 1 HETATM 60 C CAC BLA . B . D 2 26.124 9.103 17.764 0.33 163.3 ? CAC BLA 900 B 1 HETATM 61 C CBC BLA . A . D 2 25.416 9.607 18.716 0.67 164.35 ? CBC BLA 900 B 1 HETATM 62 C CBC BLA . B . D 2 24.621 8.856 17.962 0.33 176.22 ? CBC BLA 900 B 1 HETATM 63 C CHD BLA . A . D 2 29.741 10.565 17.011 0.67 134.55 ? CHD BLA 900 B 1 HETATM 64 C CHD BLA . B . D 2 28.898 10.498 17.07 0.33 138.64 ? CHD BLA 900 B 1 HETATM 65 N ND BLA . A . D 2 30.392 12.668 15.748 0.67 118.73 ? ND BLA 900 B 1 HETATM 66 N ND BLA . B . D 2 30.376 12.418 16.196 0.33 120.98 ? ND BLA 900 B 1 HETATM 67 C C1D BLA . A . D 2 30.633 11.761 16.685 0.67 123.78 ? C1D BLA 900 B 1 HETATM 68 C C1D BLA . B . D 2 30.099 11.443 17.068 0.33 127.85 ? C1D BLA 900 B 1 HETATM 69 C C2D BLA . A . D 2 31.817 12.121 17.295 0.67 122.88 ? C2D BLA 900 B 1 HETATM 70 C C2D BLA . B . D 2 31.108 11.447 18.001 0.33 125.75 ? C2D BLA 900 B 1 HETATM 71 C C3D BLA . A . D 2 32.295 13.278 16.704 0.67 118.22 ? C3D BLA 900 B 1 HETATM 72 C C3D BLA . B . D 2 32.004 12.445 17.673 0.33 122.39 ? C3D BLA 900 B 1 HETATM 73 C C4D BLA . A . D 2 31.355 13.589 15.723 0.67 120.58 ? C4D BLA 900 B 1 HETATM 74 C C4D BLA . B . D 2 31.516 13.032 16.521 0.33 120.08 ? C4D BLA 900 B 1 HETATM 75 C CMD BLA . A . D 2 32.485 11.359 18.44 0.67 127.62 ? CMD BLA 900 B 1 HETATM 76 C CMD BLA . B . D 2 31.204 10.496 19.21 0.33 127.05 ? CMD BLA 900 B 1 HETATM 77 C CAD BLA . A . D 2 33.599 14.001 17.067 0.67 107.74 ? CAD BLA 900 B 1 HETATM 78 C CAD BLA . B . D 2 33.292 12.808 18.458 0.33 97.16 ? CAD BLA 900 B 1 HETATM 79 C CBD BLA . A . D 2 34.75 13.019 16.796 0.67 100.88 ? CBD BLA 900 B 1 HETATM 80 C CBD BLA . B . D 2 34.515 12.118 17.871 0.33 100.63 ? CBD BLA 900 B 1 HETATM 81 C CGD BLA . A . D 2 36.148 13.554 17.11 0.67 97.36 ? CGD BLA 900 B 1 HETATM 82 C CGD BLA . B . D 2 35.746 12.496 18.687 0.33 102.88 ? CGD BLA 900 B 1 HETATM 83 O O1D BLA . A . D 2 36.631 13.267 18.225 0.67 105.62 ? O1D BLA 900 B 1 HETATM 84 O O1D BLA . B . D 2 36.117 13.693 18.649 0.33 104.4 ? O1D BLA 900 B 1 HETATM 85 O O2D BLA . A . D 2 36.724 14.217 16.223 0.67 85.47 ? O2D BLA 900 B 1 HETATM 86 O O2D BLA . B . D 2 36.282 11.579 19.343 0.33 99.36 ? O2D BLA 900 B 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 86 #