data_3G6V # _model_server_result.job_id HZ-xtGh2K8dfmD15dQfy7A _model_server_result.datetime_utc '2024-11-15 18:31:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g6v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":872}' # _entry.id 3G6V # _exptl.entry_id 3G6V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3G6V _cell.length_a 98.15 _cell.length_b 98.15 _cell.length_c 203.315 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G6V _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DC 6 P DC 872 1_555 B P DOC 7 P DOC 873 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale2 C O3' 3DR 5 T 3DR 840 1_555 C P DG 6 T DG 841 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.734 ? metalc ? metalc1 A OD2 ASP 34 A ASP 34 1_555 E MG MG . A MG 871 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc2 A O LEU 35 A LEU 35 1_555 E MG MG . A MG 871 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc3 A OD1 ASP 126 A ASP 126 1_555 E MG MG . A MG 871 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc4 A OE2 GLU 127 A GLU 127 1_555 F MG MG . A MG 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc5 E MG MG . A MG 871 1_555 D O2B ATP . A ATP 875 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc6 E MG MG . A MG 871 1_555 D O1A ATP . A ATP 875 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc7 F MG MG . A MG 872 1_555 D O1A ATP . A ATP 875 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? hydrog WATSON-CRICK hydrog1 B N1 DA 1 P DA 867 1_555 C N3 DT 12 T DT 847 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N6 DA 1 P DA 867 1_555 C O4 DT 12 T DT 847 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N1 DG 2 P DG 868 1_555 C N3 DC 11 T DC 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N2 DG 2 P DG 868 1_555 C O2 DC 11 T DC 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O6 DG 2 P DG 868 1_555 C N4 DC 11 T DC 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 DG 3 P DG 869 1_555 C N3 DC 10 T DC 845 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N2 DG 3 P DG 869 1_555 C O2 DC 10 T DC 845 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O6 DG 3 P DG 869 1_555 C N4 DC 10 T DC 845 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N1 DA 4 P DA 870 1_555 C N3 DT 9 T DT 844 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N6 DA 4 P DA 870 1_555 C O4 DT 9 T DT 844 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N3 DC 5 P DC 871 1_555 C N1 DG 8 T DG 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N4 DC 5 P DC 871 1_555 C O6 DG 8 T DG 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O2 DC 5 P DC 871 1_555 C N2 DG 8 T DG 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N3 DC 6 P DC 872 1_555 C N1 DG 7 T DG 842 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N4 DC 6 P DC 872 1_555 C O6 DG 7 T DG 842 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O2 DC 6 P DC 872 1_555 C N2 DG 7 T DG 842 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N3 DOC 7 P DOC 873 1_555 C N1 DG 6 T DG 841 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N4 DOC 7 P DOC 873 1_555 C O6 DG 6 T DG 841 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B O2 DOC 7 P DOC 873 1_555 C N2 DG 6 T DG 841 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3G6V _atom_sites.fract_transf_matrix[1][1] 0.010188 _atom_sites.fract_transf_matrix[1][2] 0.005882 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011765 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004918 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ATP A 1 875 875 ATP ATP . E 5 MG A 1 871 871 MG MG . F 5 MG A 1 872 872 MG MG . G 6 HOH A 1 902 902 HOH HOH . G 6 HOH A 2 903 903 HOH HOH . G 6 HOH A 3 904 904 HOH HOH . G 6 HOH A 4 905 905 HOH HOH . G 6 HOH A 5 906 906 HOH HOH . G 6 HOH A 6 909 909 HOH HOH . G 6 HOH A 7 910 910 HOH HOH . G 6 HOH A 8 911 911 HOH HOH . G 6 HOH A 9 912 912 HOH HOH . G 6 HOH A 10 915 915 HOH HOH . G 6 HOH A 11 916 916 HOH HOH . G 6 HOH A 12 918 918 HOH HOH . G 6 HOH A 13 919 919 HOH HOH . G 6 HOH A 14 920 920 HOH HOH . G 6 HOH A 15 923 923 HOH HOH . G 6 HOH A 16 924 924 HOH HOH . G 6 HOH A 17 925 925 HOH HOH . G 6 HOH A 18 926 926 HOH HOH . G 6 HOH A 19 928 928 HOH HOH . G 6 HOH A 20 929 929 HOH HOH . G 6 HOH A 21 930 930 HOH HOH . G 6 HOH A 22 932 932 HOH HOH . G 6 HOH A 23 933 933 HOH HOH . G 6 HOH A 24 934 934 HOH HOH . G 6 HOH A 25 935 935 HOH HOH . G 6 HOH A 26 936 936 HOH HOH . G 6 HOH A 27 939 939 HOH HOH . G 6 HOH A 28 940 940 HOH HOH . G 6 HOH A 29 941 941 HOH HOH . G 6 HOH A 30 946 946 HOH HOH . G 6 HOH A 31 948 948 HOH HOH . G 6 HOH A 32 950 950 HOH HOH . G 6 HOH A 33 951 951 HOH HOH . G 6 HOH A 34 953 953 HOH HOH . G 6 HOH A 35 954 954 HOH HOH . G 6 HOH A 36 955 955 HOH HOH . G 6 HOH A 37 956 956 HOH HOH . G 6 HOH A 38 957 957 HOH HOH . G 6 HOH A 39 958 958 HOH HOH . G 6 HOH A 40 959 959 HOH HOH . G 6 HOH A 41 960 960 HOH HOH . G 6 HOH A 42 961 961 HOH HOH . G 6 HOH A 43 962 962 HOH HOH . G 6 HOH A 44 963 963 HOH HOH . G 6 HOH A 45 964 964 HOH HOH . G 6 HOH A 46 965 965 HOH HOH . G 6 HOH A 47 966 966 HOH HOH . G 6 HOH A 48 967 967 HOH HOH . G 6 HOH A 49 968 968 HOH HOH . G 6 HOH A 50 969 969 HOH HOH . G 6 HOH A 51 970 970 HOH HOH . G 6 HOH A 52 973 973 HOH HOH . G 6 HOH A 53 974 974 HOH HOH . G 6 HOH A 54 975 975 HOH HOH . G 6 HOH A 55 976 976 HOH HOH . G 6 HOH A 56 979 979 HOH HOH . G 6 HOH A 57 980 980 HOH HOH . G 6 HOH A 58 984 984 HOH HOH . G 6 HOH A 59 986 986 HOH HOH . G 6 HOH A 60 988 988 HOH HOH . G 6 HOH A 61 990 990 HOH HOH . G 6 HOH A 62 991 991 HOH HOH . G 6 HOH A 63 994 994 HOH HOH . G 6 HOH A 64 995 995 HOH HOH . G 6 HOH A 65 997 997 HOH HOH . G 6 HOH A 66 1000 1000 HOH HOH . G 6 HOH A 67 1003 1003 HOH HOH . G 6 HOH A 68 1004 1004 HOH HOH . G 6 HOH A 69 1005 1005 HOH HOH . G 6 HOH A 70 1006 1006 HOH HOH . G 6 HOH A 71 1007 1007 HOH HOH . G 6 HOH A 72 1008 1008 HOH HOH . G 6 HOH A 73 1009 1009 HOH HOH . G 6 HOH A 74 1010 1010 HOH HOH . G 6 HOH A 75 1011 1011 HOH HOH . G 6 HOH A 76 1012 1012 HOH HOH . G 6 HOH A 77 1013 1013 HOH HOH . G 6 HOH A 78 1014 1014 HOH HOH . G 6 HOH A 79 1015 1015 HOH HOH . G 6 HOH A 80 1016 1016 HOH HOH . G 6 HOH A 81 1018 1018 HOH HOH . G 6 HOH A 82 1019 1019 HOH HOH . G 6 HOH A 83 1020 1020 HOH HOH . G 6 HOH A 84 1021 1021 HOH HOH . G 6 HOH A 85 1022 1022 HOH HOH . G 6 HOH A 86 1023 1023 HOH HOH . G 6 HOH A 87 1025 1025 HOH HOH . G 6 HOH A 88 1026 1026 HOH HOH . G 6 HOH A 89 1027 1027 HOH HOH . G 6 HOH A 90 1031 1031 HOH HOH . G 6 HOH A 91 1032 1032 HOH HOH . G 6 HOH A 92 1036 1036 HOH HOH . G 6 HOH A 93 1037 1037 HOH HOH . G 6 HOH A 94 1039 1039 HOH HOH . G 6 HOH A 95 1041 1041 HOH HOH . G 6 HOH A 96 1042 1042 HOH HOH . G 6 HOH A 97 1043 1043 HOH HOH . G 6 HOH A 98 1045 1045 HOH HOH . G 6 HOH A 99 1046 1046 HOH HOH . G 6 HOH A 100 1047 1047 HOH HOH . G 6 HOH A 101 1048 1048 HOH HOH . G 6 HOH A 102 1049 1049 HOH HOH . G 6 HOH A 103 1050 1050 HOH HOH . G 6 HOH A 104 1051 1051 HOH HOH . G 6 HOH A 105 1052 1052 HOH HOH . G 6 HOH A 106 1053 1053 HOH HOH . G 6 HOH A 107 1054 1054 HOH HOH . G 6 HOH A 108 1056 1056 HOH HOH . G 6 HOH A 109 1059 1059 HOH HOH . G 6 HOH A 110 1061 1061 HOH HOH . G 6 HOH A 111 1062 1062 HOH HOH . G 6 HOH A 112 1063 1063 HOH HOH . G 6 HOH A 113 1064 1064 HOH HOH . G 6 HOH A 114 1065 1065 HOH HOH . G 6 HOH A 115 1066 1066 HOH HOH . G 6 HOH A 116 1067 1067 HOH HOH . G 6 HOH A 117 1068 1068 HOH HOH . G 6 HOH A 118 1070 1070 HOH HOH . G 6 HOH A 119 1071 1071 HOH HOH . G 6 HOH A 120 1073 1073 HOH HOH . G 6 HOH A 121 1075 1075 HOH HOH . G 6 HOH A 122 1077 1077 HOH HOH . G 6 HOH A 123 1078 1078 HOH HOH . G 6 HOH A 124 1079 1079 HOH HOH . G 6 HOH A 125 1081 1081 HOH HOH . G 6 HOH A 126 1082 1082 HOH HOH . G 6 HOH A 127 1083 1083 HOH HOH . G 6 HOH A 128 1084 1084 HOH HOH . G 6 HOH A 129 1086 1086 HOH HOH . G 6 HOH A 130 1087 1087 HOH HOH . G 6 HOH A 131 1090 1090 HOH HOH . G 6 HOH A 132 1091 1091 HOH HOH . G 6 HOH A 133 1092 1092 HOH HOH . G 6 HOH A 134 1093 1093 HOH HOH . G 6 HOH A 135 1095 1095 HOH HOH . G 6 HOH A 136 1096 1096 HOH HOH . G 6 HOH A 137 1097 1097 HOH HOH . G 6 HOH A 138 1098 1098 HOH HOH . G 6 HOH A 139 1099 1099 HOH HOH . G 6 HOH A 140 1100 1100 HOH HOH . G 6 HOH A 141 1101 1101 HOH HOH . G 6 HOH A 142 1102 1102 HOH HOH . G 6 HOH A 143 1103 1103 HOH HOH . G 6 HOH A 144 1104 1104 HOH HOH . G 6 HOH A 145 1107 1107 HOH HOH . G 6 HOH A 146 1108 1108 HOH HOH . G 6 HOH A 147 1109 1109 HOH HOH . G 6 HOH A 148 1110 1110 HOH HOH . G 6 HOH A 149 1111 1111 HOH HOH . G 6 HOH A 150 1112 1112 HOH HOH . G 6 HOH A 151 1113 1113 HOH HOH . G 6 HOH A 152 1114 1114 HOH HOH . G 6 HOH A 153 1115 1115 HOH HOH . G 6 HOH A 154 1116 1116 HOH HOH . G 6 HOH A 155 1117 1117 HOH HOH . G 6 HOH A 156 1118 1118 HOH HOH . H 6 HOH P 1 927 927 HOH HOH . H 6 HOH P 2 931 931 HOH HOH . H 6 HOH P 3 972 972 HOH HOH . I 6 HOH T 1 900 900 HOH HOH . I 6 HOH T 2 908 908 HOH HOH . I 6 HOH T 3 937 937 HOH HOH . I 6 HOH T 4 938 938 HOH HOH . I 6 HOH T 5 942 942 HOH HOH . I 6 HOH T 6 944 944 HOH HOH . I 6 HOH T 7 985 985 HOH HOH . I 6 HOH T 8 992 992 HOH HOH . I 6 HOH T 9 1074 1074 HOH HOH . I 6 HOH T 10 1080 1080 HOH HOH . I 6 HOH T 11 1105 1105 HOH HOH . I 6 HOH T 12 1106 1106 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 4.715 _atom_site.Cartn_y 22.252 _atom_site.Cartn_z 12.471 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 58.62 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 872 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #