data_3G6W # _model_server_result.job_id VsGPTuni6I-j_NCAoxgrVQ _model_server_result.datetime_utc '2024-10-14 05:24:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g6w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 3G6W # _exptl.entry_id 3G6W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.8 _cell.angle_gamma 90 _cell.entry_id 3G6W _cell.length_a 60.038 _cell.length_b 98.758 _cell.length_c 73.528 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G6W _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 T O HOH . A HOH 217 1_555 H MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc2 T O HOH . A HOH 218 1_555 H MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc3 T O HOH . A HOH 229 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc4 E O1B GTP . A GTP 301 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc5 E O1A GTP . A GTP 301 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc6 F MG MG . A MG 302 1_555 P O1B GTP . D GTP 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc7 F MG MG . A MG 302 1_555 P O1A GTP . D GTP 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc8 G O3A PRP . A PRP 303 1_555 H MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc9 G O1B PRP . A PRP 303 1_555 H MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc10 G O2B PRP . A PRP 303 1_555 H MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc11 U O HOH . B HOH 218 1_555 J MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc12 I O1B GTP . B GTP 301 1_555 J MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc13 I O1A GTP . B GTP 301 1_555 J MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc14 J MG MG . B MG 302 1_555 W O HOH . D HOH 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc15 J MG MG . B MG 302 1_555 O O1A GTP . D GTP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc16 J MG MG . B MG 302 1_555 O O1B GTP . D GTP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc17 W O HOH . D HOH 219 1_555 S MG MG . D MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc18 W O HOH . D HOH 220 1_555 S MG MG . D MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc19 Q O1B PRP . D PRP 303 1_555 S MG MG . D MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? metalc ? metalc20 Q O3B PRP . D PRP 303 1_555 S MG MG . D MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3G6W _atom_sites.fract_transf_matrix[1][1] 0.016656 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000815 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010126 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013617 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GTP A 1 301 301 GTP GTP . F 3 MG A 1 302 302 MG MG2 . G 4 PRP A 1 303 303 PRP PRP . H 3 MG A 1 305 305 MG MG2 . I 2 GTP B 1 301 301 GTP GTP . J 3 MG B 1 302 302 MG MG2 . K 5 HSX B 1 306 306 HSX R5P . L 6 POP B 1 307 307 POP POP . M 5 HSX C 1 306 306 HSX R5P . N 6 POP C 1 307 307 POP POP . O 2 GTP D 1 301 301 GTP GTP . P 2 GTP D 1 217 301 GTP GTP . Q 4 PRP D 1 303 303 PRP PRP . R 5 HSX D 1 306 306 HSX R5P . S 3 MG D 1 304 304 MG MG2 . T 7 HOH A 1 217 44 HOH HOH . T 7 HOH A 2 218 48 HOH HOH . T 7 HOH A 3 219 46 HOH HOH . T 7 HOH A 4 220 1 HOH HOH . T 7 HOH A 5 221 3 HOH HOH . T 7 HOH A 6 222 5 HOH HOH . T 7 HOH A 7 223 18 HOH HOH . T 7 HOH A 8 224 20 HOH HOH . T 7 HOH A 9 225 24 HOH HOH . T 7 HOH A 10 226 25 HOH HOH . T 7 HOH A 11 227 28 HOH HOH . T 7 HOH A 12 228 23 HOH HOH . T 7 HOH A 13 229 51 HOH HOH . U 7 HOH B 1 218 47 HOH HOH . U 7 HOH B 2 219 6 HOH HOH . U 7 HOH B 3 220 17 HOH HOH . U 7 HOH B 4 221 19 HOH HOH . U 7 HOH B 5 222 26 HOH HOH . V 7 HOH C 1 217 10 HOH HOH . V 7 HOH C 2 218 11 HOH HOH . V 7 HOH C 3 219 12 HOH HOH . V 7 HOH C 4 220 13 HOH HOH . V 7 HOH C 5 221 14 HOH HOH . V 7 HOH C 6 222 15 HOH HOH . V 7 HOH C 7 223 22 HOH HOH . V 7 HOH C 8 225 27 HOH HOH . W 7 HOH D 1 218 50 HOH HOH . W 7 HOH D 2 219 49 HOH HOH . W 7 HOH D 3 220 45 HOH HOH . W 7 HOH D 4 221 2 HOH HOH . W 7 HOH D 5 222 4 HOH HOH . W 7 HOH D 6 223 8 HOH HOH . W 7 HOH D 7 224 16 HOH HOH . W 7 HOH D 8 225 21 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -7.303 _atom_site.Cartn_y 16.259 _atom_site.Cartn_z 7.309 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 92.14 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #