data_3G6X # _model_server_result.job_id 7kgT4Y0R4lxzFR5ERBoN5Q _model_server_result.datetime_utc '2024-11-15 18:45:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g6x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":872}' # _entry.id 3G6X # _exptl.entry_id 3G6X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3G6X _cell.length_a 98.114 _cell.length_b 98.114 _cell.length_c 202.823 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G6X _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DC 6 P DC 872 1_555 B P DOC 7 P DOC 873 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale2 C O3' 3DR 4 T 3DR 840 1_555 C P DG 5 T DG 841 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.739 ? metalc ? metalc1 A OD2 ASP 34 A ASP 34 1_555 E MG MG . A MG 871 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc2 A O LEU 35 A LEU 35 1_555 E MG MG . A MG 871 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc3 A OD1 ASP 126 A ASP 126 1_555 E MG MG . A MG 871 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc4 A OE2 GLU 127 A GLU 127 1_555 F MG MG . A MG 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc5 E MG MG . A MG 871 1_555 D O1G DGT . A DGT 875 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc6 E MG MG . A MG 871 1_555 D O2B DGT . A DGT 875 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc7 E MG MG . A MG 871 1_555 D O1A DGT . A DGT 875 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? hydrog WATSON-CRICK hydrog1 B N1 DA 1 P DA 867 1_555 C N3 DT 11 T DT 847 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N6 DA 1 P DA 867 1_555 C O4 DT 11 T DT 847 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N1 DG 2 P DG 868 1_555 C N3 DC 10 T DC 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N2 DG 2 P DG 868 1_555 C O2 DC 10 T DC 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O6 DG 2 P DG 868 1_555 C N4 DC 10 T DC 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 DG 3 P DG 869 1_555 C N3 DC 9 T DC 845 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N2 DG 3 P DG 869 1_555 C O2 DC 9 T DC 845 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O6 DG 3 P DG 869 1_555 C N4 DC 9 T DC 845 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N1 DA 4 P DA 870 1_555 C N3 DT 8 T DT 844 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N6 DA 4 P DA 870 1_555 C O4 DT 8 T DT 844 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N3 DC 5 P DC 871 1_555 C N1 DG 7 T DG 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N4 DC 5 P DC 871 1_555 C O6 DG 7 T DG 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O2 DC 5 P DC 871 1_555 C N2 DG 7 T DG 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N3 DC 6 P DC 872 1_555 C N1 DG 6 T DG 842 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N4 DC 6 P DC 872 1_555 C O6 DG 6 T DG 842 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O2 DC 6 P DC 872 1_555 C N2 DG 6 T DG 842 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N3 DOC 7 P DOC 873 1_555 C N1 DG 5 T DG 841 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N4 DOC 7 P DOC 873 1_555 C O6 DG 5 T DG 841 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B O2 DOC 7 P DOC 873 1_555 C N2 DG 5 T DG 841 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3G6X _atom_sites.fract_transf_matrix[1][1] 0.010192 _atom_sites.fract_transf_matrix[1][2] 0.005884 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011769 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00493 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DGT A 1 875 875 DGT DGT . E 5 MG A 1 871 871 MG MG2 . F 5 MG A 1 872 872 MG MG2 . G 6 HOH A 1 421 2 HOH HOH . G 6 HOH A 2 422 3 HOH HOH . G 6 HOH A 3 423 4 HOH HOH . G 6 HOH A 4 424 7 HOH HOH . G 6 HOH A 5 425 8 HOH HOH . G 6 HOH A 6 426 9 HOH HOH . G 6 HOH A 7 427 10 HOH HOH . G 6 HOH A 8 428 12 HOH HOH . G 6 HOH A 9 429 13 HOH HOH . G 6 HOH A 10 430 14 HOH HOH . G 6 HOH A 11 431 15 HOH HOH . G 6 HOH A 12 432 16 HOH HOH . G 6 HOH A 13 433 17 HOH HOH . G 6 HOH A 14 434 18 HOH HOH . G 6 HOH A 15 435 20 HOH HOH . G 6 HOH A 16 436 21 HOH HOH . G 6 HOH A 17 437 22 HOH HOH . G 6 HOH A 18 438 23 HOH HOH . G 6 HOH A 19 439 26 HOH HOH . G 6 HOH A 20 440 28 HOH HOH . G 6 HOH A 21 441 30 HOH HOH . G 6 HOH A 22 442 32 HOH HOH . G 6 HOH A 23 443 34 HOH HOH . G 6 HOH A 24 444 35 HOH HOH . G 6 HOH A 25 445 36 HOH HOH . G 6 HOH A 26 446 37 HOH HOH . G 6 HOH A 27 447 39 HOH HOH . G 6 HOH A 28 448 40 HOH HOH . G 6 HOH A 29 449 41 HOH HOH . G 6 HOH A 30 450 42 HOH HOH . G 6 HOH A 31 451 43 HOH HOH . G 6 HOH A 32 452 44 HOH HOH . G 6 HOH A 33 453 45 HOH HOH . G 6 HOH A 34 454 47 HOH HOH . G 6 HOH A 35 455 49 HOH HOH . G 6 HOH A 36 456 50 HOH HOH . G 6 HOH A 37 457 51 HOH HOH . G 6 HOH A 38 458 52 HOH HOH . G 6 HOH A 39 459 53 HOH HOH . G 6 HOH A 40 460 54 HOH HOH . G 6 HOH A 41 461 55 HOH HOH . G 6 HOH A 42 462 56 HOH HOH . G 6 HOH A 43 463 57 HOH HOH . G 6 HOH A 44 464 58 HOH HOH . G 6 HOH A 45 465 59 HOH HOH . G 6 HOH A 46 466 61 HOH HOH . G 6 HOH A 47 467 62 HOH HOH . G 6 HOH A 48 468 63 HOH HOH . G 6 HOH A 49 469 65 HOH HOH . G 6 HOH A 50 470 66 HOH HOH . G 6 HOH A 51 471 67 HOH HOH . G 6 HOH A 52 472 68 HOH HOH . G 6 HOH A 53 473 70 HOH HOH . G 6 HOH A 54 474 72 HOH HOH . G 6 HOH A 55 475 74 HOH HOH . G 6 HOH A 56 476 75 HOH HOH . G 6 HOH A 57 477 77 HOH HOH . G 6 HOH A 58 478 78 HOH HOH . G 6 HOH A 59 479 83 HOH HOH . G 6 HOH A 60 480 84 HOH HOH . G 6 HOH A 61 481 85 HOH HOH . G 6 HOH A 62 482 86 HOH HOH . G 6 HOH A 63 483 87 HOH HOH . G 6 HOH A 64 484 89 HOH HOH . G 6 HOH A 65 485 90 HOH HOH . G 6 HOH A 66 486 91 HOH HOH . G 6 HOH A 67 487 94 HOH HOH . G 6 HOH A 68 488 95 HOH HOH . G 6 HOH A 69 489 97 HOH HOH . G 6 HOH A 70 490 100 HOH HOH . G 6 HOH A 71 491 101 HOH HOH . G 6 HOH A 72 492 103 HOH HOH . G 6 HOH A 73 493 104 HOH HOH . G 6 HOH A 74 494 105 HOH HOH . G 6 HOH A 75 495 106 HOH HOH . G 6 HOH A 76 496 108 HOH HOH . G 6 HOH A 77 497 110 HOH HOH . G 6 HOH A 78 498 111 HOH HOH . G 6 HOH A 79 499 112 HOH HOH . G 6 HOH A 80 500 114 HOH HOH . G 6 HOH A 81 501 119 HOH HOH . G 6 HOH A 82 502 120 HOH HOH . G 6 HOH A 83 503 121 HOH HOH . G 6 HOH A 84 504 123 HOH HOH . G 6 HOH A 85 505 126 HOH HOH . G 6 HOH A 86 506 127 HOH HOH . G 6 HOH A 87 507 129 HOH HOH . G 6 HOH A 88 508 130 HOH HOH . G 6 HOH A 89 509 131 HOH HOH . G 6 HOH A 90 510 133 HOH HOH . G 6 HOH A 91 511 135 HOH HOH . G 6 HOH A 92 512 136 HOH HOH . G 6 HOH A 93 513 138 HOH HOH . G 6 HOH A 94 514 141 HOH HOH . G 6 HOH A 95 515 142 HOH HOH . G 6 HOH A 96 516 143 HOH HOH . G 6 HOH A 97 517 144 HOH HOH . G 6 HOH A 98 518 148 HOH HOH . G 6 HOH A 99 519 149 HOH HOH . G 6 HOH A 100 520 150 HOH HOH . G 6 HOH A 101 521 151 HOH HOH . G 6 HOH A 102 522 152 HOH HOH . G 6 HOH A 103 523 155 HOH HOH . G 6 HOH A 104 524 157 HOH HOH . G 6 HOH A 105 525 158 HOH HOH . G 6 HOH A 106 526 159 HOH HOH . G 6 HOH A 107 527 161 HOH HOH . G 6 HOH A 108 528 163 HOH HOH . G 6 HOH A 109 529 164 HOH HOH . G 6 HOH A 110 530 165 HOH HOH . G 6 HOH A 111 531 166 HOH HOH . G 6 HOH A 112 532 167 HOH HOH . G 6 HOH A 113 533 168 HOH HOH . G 6 HOH A 114 534 173 HOH HOH . G 6 HOH A 115 535 174 HOH HOH . G 6 HOH A 116 536 175 HOH HOH . G 6 HOH A 117 537 176 HOH HOH . G 6 HOH A 118 538 182 HOH HOH . G 6 HOH A 119 539 186 HOH HOH . G 6 HOH A 120 540 188 HOH HOH . G 6 HOH A 121 541 189 HOH HOH . G 6 HOH A 122 542 191 HOH HOH . G 6 HOH A 123 543 193 HOH HOH . G 6 HOH A 124 544 194 HOH HOH . G 6 HOH A 125 545 196 HOH HOH . G 6 HOH A 126 546 198 HOH HOH . G 6 HOH A 127 547 201 HOH HOH . G 6 HOH A 128 548 203 HOH HOH . G 6 HOH A 129 549 204 HOH HOH . G 6 HOH A 130 550 207 HOH HOH . G 6 HOH A 131 551 208 HOH HOH . G 6 HOH A 132 552 209 HOH HOH . G 6 HOH A 133 553 210 HOH HOH . G 6 HOH A 134 554 211 HOH HOH . G 6 HOH A 135 555 214 HOH HOH . G 6 HOH A 136 556 215 HOH HOH . G 6 HOH A 137 557 216 HOH HOH . G 6 HOH A 138 558 219 HOH HOH . G 6 HOH A 139 559 222 HOH HOH . G 6 HOH A 140 560 225 HOH HOH . G 6 HOH A 141 561 228 HOH HOH . G 6 HOH A 142 562 231 HOH HOH . G 6 HOH A 143 563 232 HOH HOH . G 6 HOH A 144 564 233 HOH HOH . G 6 HOH A 145 565 234 HOH HOH . G 6 HOH A 146 566 236 HOH HOH . G 6 HOH A 147 567 238 HOH HOH . G 6 HOH A 148 568 242 HOH HOH . G 6 HOH A 149 569 244 HOH HOH . G 6 HOH A 150 570 246 HOH HOH . G 6 HOH A 151 571 247 HOH HOH . G 6 HOH A 152 572 248 HOH HOH . G 6 HOH A 153 573 249 HOH HOH . G 6 HOH A 154 574 250 HOH HOH . G 6 HOH A 155 575 251 HOH HOH . G 6 HOH A 156 576 252 HOH HOH . G 6 HOH A 157 577 255 HOH HOH . G 6 HOH A 158 578 258 HOH HOH . G 6 HOH A 159 579 259 HOH HOH . G 6 HOH A 160 580 261 HOH HOH . G 6 HOH A 161 581 262 HOH HOH . G 6 HOH A 162 582 263 HOH HOH . G 6 HOH A 163 583 264 HOH HOH . G 6 HOH A 164 584 265 HOH HOH . G 6 HOH A 165 585 268 HOH HOH . G 6 HOH A 166 586 269 HOH HOH . G 6 HOH A 167 587 270 HOH HOH . G 6 HOH A 168 588 271 HOH HOH . G 6 HOH A 169 589 272 HOH HOH . G 6 HOH A 170 590 275 HOH HOH . G 6 HOH A 171 591 276 HOH HOH . G 6 HOH A 172 592 278 HOH HOH . G 6 HOH A 173 593 280 HOH HOH . G 6 HOH A 174 594 281 HOH HOH . G 6 HOH A 175 595 282 HOH HOH . G 6 HOH A 176 596 286 HOH HOH . G 6 HOH A 177 597 287 HOH HOH . G 6 HOH A 178 598 288 HOH HOH . G 6 HOH A 179 599 291 HOH HOH . G 6 HOH A 180 600 293 HOH HOH . G 6 HOH A 181 601 294 HOH HOH . G 6 HOH A 182 602 295 HOH HOH . G 6 HOH A 183 603 299 HOH HOH . G 6 HOH A 184 604 300 HOH HOH . G 6 HOH A 185 605 301 HOH HOH . G 6 HOH A 186 606 304 HOH HOH . G 6 HOH A 187 607 308 HOH HOH . G 6 HOH A 188 608 310 HOH HOH . G 6 HOH A 189 609 312 HOH HOH . G 6 HOH A 190 610 313 HOH HOH . G 6 HOH A 191 611 315 HOH HOH . G 6 HOH A 192 612 317 HOH HOH . G 6 HOH A 193 613 318 HOH HOH . G 6 HOH A 194 614 321 HOH HOH . G 6 HOH A 195 615 323 HOH HOH . G 6 HOH A 196 616 325 HOH HOH . G 6 HOH A 197 617 329 HOH HOH . G 6 HOH A 198 618 260 HOH HOH . H 6 HOH P 1 29 29 HOH HOH . H 6 HOH P 2 71 71 HOH HOH . H 6 HOH P 3 124 124 HOH HOH . H 6 HOH P 4 177 177 HOH HOH . H 6 HOH P 5 245 245 HOH HOH . H 6 HOH P 6 284 284 HOH HOH . I 6 HOH T 1 11 11 HOH HOH . I 6 HOH T 2 38 38 HOH HOH . I 6 HOH T 3 46 46 HOH HOH . I 6 HOH T 4 69 69 HOH HOH . I 6 HOH T 5 79 79 HOH HOH . I 6 HOH T 6 116 116 HOH HOH . I 6 HOH T 7 125 125 HOH HOH . I 6 HOH T 8 140 140 HOH HOH . I 6 HOH T 9 156 156 HOH HOH . I 6 HOH T 10 243 243 HOH HOH . I 6 HOH T 11 254 254 HOH HOH . I 6 HOH T 12 273 273 HOH HOH . I 6 HOH T 13 279 279 HOH HOH . I 6 HOH T 14 316 316 HOH HOH . I 6 HOH T 15 330 330 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 4.447 _atom_site.Cartn_y 22.668 _atom_site.Cartn_z 12.202 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 59.68 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 872 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 1 #