data_3G7M # _model_server_result.job_id eh9_x8xWlAgmNL-sZxLyYg _model_server_result.datetime_utc '2025-02-16 22:43:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g7m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2690}' # _entry.id 3G7M # _exptl.entry_id 3G7M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3G7M _cell.length_a 104.019 _cell.length_b 104.019 _cell.length_c 30.047 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G7M _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1 1 0 0 0 -1 0 0 0 -1 0 0 -30.047 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 9 1_555 A SG CYS 150 A CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf2 A SG CYS 54 A CYS 54 1_555 A SG CYS 64 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf3 A SG CYS 69 A CYS 69 1_555 A SG CYS 76 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf4 A SG CYS 115 A CYS 115 1_555 A SG CYS 138 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf5 A SG CYS 123 A CYS 123 1_555 A SG CYS 128 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3G7M _atom_sites.fract_transf_matrix[1][1] 0.009614 _atom_sites.fract_transf_matrix[1][2] 0.00555 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011101 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.033281 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 152 1 NA NA . C 3 GOL A 1 2690 2690 GOL CRY . D 4 HOH A 1 153 1 HOH HOH . D 4 HOH A 2 154 2 HOH HOH . D 4 HOH A 3 155 3 HOH HOH . D 4 HOH A 4 156 4 HOH HOH . D 4 HOH A 5 157 5 HOH HOH . D 4 HOH A 6 158 6 HOH HOH . D 4 HOH A 7 159 7 HOH HOH . D 4 HOH A 8 160 8 HOH HOH . D 4 HOH A 9 161 9 HOH HOH . D 4 HOH A 10 162 10 HOH HOH . D 4 HOH A 11 163 11 HOH HOH . D 4 HOH A 12 164 12 HOH HOH . D 4 HOH A 13 165 13 HOH HOH . D 4 HOH A 14 166 14 HOH HOH . D 4 HOH A 15 167 15 HOH HOH . D 4 HOH A 16 168 16 HOH HOH . D 4 HOH A 17 169 17 HOH HOH . D 4 HOH A 18 170 18 HOH HOH . D 4 HOH A 19 171 19 HOH HOH . D 4 HOH A 20 172 20 HOH HOH . D 4 HOH A 21 173 21 HOH HOH . D 4 HOH A 22 174 22 HOH HOH . D 4 HOH A 23 175 23 HOH HOH . D 4 HOH A 24 176 24 HOH HOH . D 4 HOH A 25 177 25 HOH HOH . D 4 HOH A 26 178 26 HOH HOH . D 4 HOH A 27 179 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . A . C 3 -38.4 -1.579 -8.703 0.5 41.75 ? C1 GOL 2690 A 1 HETATM 2 C C1 GOL . B . C 3 -37.877 -2.708 -10.842 0.5 42.98 ? C1 GOL 2690 A 1 HETATM 3 O O1 GOL . A . C 3 -39.6 -1.831 -7.944 0.5 40.78 ? O1 GOL 2690 A 1 HETATM 4 O O1 GOL . B . C 3 -37.942 -1.854 -9.616 0.5 42.47 ? O1 GOL 2690 A 1 HETATM 5 C C2 GOL . A . C 3 -37.765 -2.865 -9.253 0.5 41.79 ? C2 GOL 2690 A 1 HETATM 6 C C2 GOL . B . C 3 -36.308 -2.747 -11.143 0.5 43.37 ? C2 GOL 2690 A 1 HETATM 7 O O2 GOL . A . C 3 -38.468 -4.06 -8.861 0.5 41.84 ? O2 GOL 2690 A 1 HETATM 8 O O2 GOL . B . C 3 -35.583 -3.116 -9.872 0.5 44.09 ? O2 GOL 2690 A 1 HETATM 9 C C3 GOL . A . C 3 -37.676 -2.803 -10.777 0.5 42.24 ? C3 GOL 2690 A 1 HETATM 10 C C3 GOL . B . C 3 -35.99 -3.758 -12.272 0.5 42.81 ? C3 GOL 2690 A 1 HETATM 11 O O3 GOL . A . C 3 -36.965 -4.007 -11.197 0.5 42.8 ? O3 GOL 2690 A 1 HETATM 12 O O3 GOL . B . C 3 -34.513 -3.579 -12.679 0.5 41.89 ? O3 GOL 2690 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #