data_3G82 # _model_server_result.job_id EwTCxGfb2Lbpt8banvDxIg _model_server_result.datetime_utc '2024-11-27 21:03:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g82 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":100}' # _entry.id 3G82 # _exptl.entry_id 3G82 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 641.313 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3'-O-{[2-(methylamino)phenyl]carbonyl}inosine 5'-(tetrahydrogen triphosphate)" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3G82 _cell.length_a 117.637 _cell.length_b 133.423 _cell.length_c 70.642 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G82 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G O2A MI3 . A MI3 100 1_555 D MN MN . A MN 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc2 G O1B MI3 . A MI3 100 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc3 G O3B MI3 . A MI3 100 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc4 A OD2 ASP 41 A ASP 396 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc5 A O ILE 42 A ILE 397 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc6 A OD1 ASP 85 A ASP 440 1_555 D MN MN . A MN 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc7 A OD2 ASP 85 A ASP 440 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc8 C OG SER 54 C SER 54 1_555 H MG MG . C MG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc9 C OG1 THR 204 C THR 204 1_555 H MG MG . C MG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc10 J O2G GSP . C GSP 395 1_555 H MG MG . C MG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.722 ? metalc ? metalc11 J O2B GSP . C GSP 395 1_555 H MG MG . C MG 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? # _chem_comp.formula 'C18 H22 N5 O15 P3' _chem_comp.formula_weight 641.313 _chem_comp.id MI3 _chem_comp.mon_nstd_flag . _chem_comp.name "3'-O-{[2-(methylamino)phenyl]carbonyl}inosine 5'-(tetrahydrogen triphosphate)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA7 NA1 MI3 sing 352 n n NA1 CA6 MI3 sing 353 n n CA6 CA5 MI3 doub 354 n y CA6 CA1 MI3 sing 355 n y CA5 CA4 MI3 sing 356 n y CA4 CA3 MI3 doub 357 n y CA3 CA2 MI3 sing 358 n y CA2 CA1 MI3 doub 359 n y CA1 CA MI3 sing 360 n n CA OA MI3 doub 361 n n CA O3' MI3 sing 362 n n O3' C3' MI3 sing 363 n n C3' C2' MI3 sing 364 n n C3' C4' MI3 sing 365 n n C2' O2' MI3 sing 366 n n C2' C1' MI3 sing 367 n n C4' C5' MI3 sing 368 n n C4' O4' MI3 sing 369 n n C5' O5' MI3 sing 370 n n O5' PA MI3 sing 371 n n PA O3A MI3 sing 372 n n PA O2A MI3 doub 373 n n PA O1A MI3 sing 374 n n O1A PB MI3 sing 375 n n PB O3B MI3 sing 376 n n PB O2B MI3 doub 377 n n PB O1B MI3 sing 378 n n O1B PG MI3 sing 379 n n PG O3G MI3 sing 380 n n PG O1G MI3 sing 381 n n PG O2G MI3 doub 382 n n O4' C1' MI3 sing 383 n n C1' N9 MI3 sing 384 n n N9 C8 MI3 sing 385 n y N9 C4 MI3 sing 386 n y C8 N7 MI3 doub 387 n y N7 C5 MI3 sing 388 n y C5 C4 MI3 doub 389 n y C5 C6 MI3 sing 390 n n C4 N3 MI3 sing 391 n n N3 C2 MI3 doub 392 n n C2 N1 MI3 sing 393 n n N1 C6 MI3 sing 394 n n C6 O6 MI3 doub 395 n n CA7 HA7 MI3 sing 396 n n CA7 HA7A MI3 sing 397 n n CA7 HA7B MI3 sing 398 n n NA1 HNA1 MI3 sing 399 n n CA5 HA5 MI3 sing 400 n n CA4 HA4 MI3 sing 401 n n CA3 HA3 MI3 sing 402 n n CA2 HA2 MI3 sing 403 n n C3' H3' MI3 sing 404 n n C2' H2' MI3 sing 405 n n O2' HO2' MI3 sing 406 n n C4' H4' MI3 sing 407 n n C5' H5' MI3 sing 408 n n C5' "H5'A" MI3 sing 409 n n C1' H1' MI3 sing 410 n n C8 H8 MI3 sing 411 n n C2 H2 MI3 sing 412 n n N1 HN1 MI3 sing 413 n n O3A HO3A MI3 sing 414 n n O3B HO3B MI3 sing 415 n n O3G HO3G MI3 sing 416 n n O1G HO1G MI3 sing 417 n n # _atom_sites.entry_id 3G82 _atom_sites.fract_transf_matrix[1][1] 0.008501 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007495 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014156 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN A 1 581 502 MN MN . E 4 MN A 1 582 503 MN MN . F 5 FOK A 1 101 101 FOK FOK . G 6 MI3 A 1 100 100 MI3 MI3 . H 7 MG C 1 396 396 MG MG . I 8 CL C 1 397 397 CL CL . J 9 GSP C 1 395 395 GSP GSP . K 10 HOH A 1 22 22 HOH HOH . L 10 HOH B 1 28 28 HOH HOH . L 10 HOH B 2 37 37 HOH HOH . M 10 HOH C 1 398 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA7 MI3 . . . G 6 66.547 -14.383 -15.565 1 42.19 ? CA7 MI3 100 A 1 HETATM 2 N NA1 MI3 . . . G 6 65.1 -14.651 -15.665 1 42.33 ? NA1 MI3 100 A 1 HETATM 3 C CA6 MI3 . . . G 6 64.568 -15.862 -15.472 1 42.15 ? CA6 MI3 100 A 1 HETATM 4 C CA5 MI3 . . . G 6 65.51 -17.033 -15.127 1 42.13 ? CA5 MI3 100 A 1 HETATM 5 C CA4 MI3 . . . G 6 64.826 -18.239 -14.948 1 42.16 ? CA4 MI3 100 A 1 HETATM 6 C CA3 MI3 . . . G 6 63.443 -18.365 -15.07 1 42.14 ? CA3 MI3 100 A 1 HETATM 7 C CA2 MI3 . . . G 6 62.633 -17.277 -15.386 1 42.16 ? CA2 MI3 100 A 1 HETATM 8 C CA1 MI3 . . . G 6 63.184 -16.012 -15.59 1 42.15 ? CA1 MI3 100 A 1 HETATM 9 C CA MI3 . . . G 6 62.236 -14.846 -15.939 1 42.08 ? CA MI3 100 A 1 HETATM 10 O OA MI3 . . . G 6 62.712 -13.585 -16.147 1 42.18 ? OA MI3 100 A 1 HETATM 11 O O3' MI3 . . . G 6 60.9 -15.122 -16.028 1 41.92 ? O3' MI3 100 A 1 HETATM 12 C C3' MI3 . . . G 6 60.042 -14.033 -16.385 1 41.43 ? C3' MI3 100 A 1 HETATM 13 C C2' MI3 . . . G 6 58.962 -14.491 -17.363 1 40.99 ? C2' MI3 100 A 1 HETATM 14 O O2' MI3 . . . G 6 59.478 -15.343 -18.392 1 40.19 ? O2' MI3 100 A 1 HETATM 15 C C4' MI3 . . . G 6 59.248 -13.751 -15.123 1 40.97 ? C4' MI3 100 A 1 HETATM 16 C C5' MI3 . . . G 6 59.136 -12.225 -14.922 1 40.77 ? C5' MI3 100 A 1 HETATM 17 O O5' MI3 . . . G 6 57.76 -11.797 -14.817 1 40.25 ? O5' MI3 100 A 1 HETATM 18 P PA MI3 . . . G 6 57.271 -10.36 -15.411 1 39.51 ? PA MI3 100 A 1 HETATM 19 O O3A MI3 . . . G 6 57.862 -10.243 -16.931 1 39.53 ? O3A MI3 100 A 1 HETATM 20 O O2A MI3 . . . G 6 55.792 -10.237 -15.414 1 39.24 ? O2A MI3 100 A 1 HETATM 21 O O1A MI3 . . . G 6 58.003 -9.242 -14.513 1 38.12 ? O1A MI3 100 A 1 HETATM 22 P PB MI3 . . . G 6 57.24 -8.629 -13.237 1 37.15 ? PB MI3 100 A 1 HETATM 23 O O3B MI3 . . . G 6 55.898 -9.503 -13.019 1 37.42 ? O3B MI3 100 A 1 HETATM 24 O O2B MI3 . . . G 6 56.931 -7.19 -13.445 1 37.73 ? O2B MI3 100 A 1 HETATM 25 O O1B MI3 . . . G 6 58.165 -8.941 -11.961 1 37.42 ? O1B MI3 100 A 1 HETATM 26 P PG MI3 . . . G 6 59.239 -7.771 -11.456 1 37.83 ? PG MI3 100 A 1 HETATM 27 O O3G MI3 . . . G 6 60.442 -8.158 -10.534 1 37.48 ? O3G MI3 100 A 1 HETATM 28 O O1G MI3 . . . G 6 59.73 -6.53 -12.288 1 37.79 ? O1G MI3 100 A 1 HETATM 29 O O2G MI3 . . . G 6 58.029 -7.457 -10.642 1 37.79 ? O2G MI3 100 A 1 HETATM 30 O O4' MI3 . . . G 6 57.957 -14.415 -15.315 1 41.02 ? O4' MI3 100 A 1 HETATM 31 C C1' MI3 . . . G 6 58.14 -15.32 -16.415 1 41.3 ? C1' MI3 100 A 1 HETATM 32 N N9 MI3 . . . G 6 56.899 -15.731 -17.094 1 41.57 ? N9 MI3 100 A 1 HETATM 33 C C8 MI3 . . . G 6 55.783 -15.016 -17.219 1 41.77 ? C8 MI3 100 A 1 HETATM 34 N N7 MI3 . . . G 6 54.882 -15.731 -17.889 1 41.87 ? N7 MI3 100 A 1 HETATM 35 C C5 MI3 . . . G 6 55.426 -16.902 -18.187 1 41.79 ? C5 MI3 100 A 1 HETATM 36 C C4 MI3 . . . G 6 56.715 -16.905 -17.682 1 41.89 ? C4 MI3 100 A 1 HETATM 37 N N3 MI3 . . . G 6 57.514 -17.974 -17.832 1 41.85 ? N3 MI3 100 A 1 HETATM 38 C C2 MI3 . . . G 6 57.099 -19.054 -18.469 1 41.72 ? C2 MI3 100 A 1 HETATM 39 N N1 MI3 . . . G 6 55.806 -19.117 -19.006 1 41.59 ? N1 MI3 100 A 1 HETATM 40 C C6 MI3 . . . G 6 54.959 -18.018 -18.859 1 41.56 ? C6 MI3 100 A 1 HETATM 41 O O6 MI3 . . . G 6 53.821 -18.034 -19.317 1 41.72 ? O6 MI3 100 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 41 #