data_3G84 # _model_server_result.job_id HRd7m4T6VcrOjwO4VYyfbg _model_server_result.datetime_utc '2024-11-22 08:08:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g84 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":401}' # _entry.id 3G84 # _exptl.entry_id 3G84 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.47 _cell.angle_gamma 90 _cell.entry_id 3G84 _cell.length_a 55.605 _cell.length_b 108.066 _cell.length_c 55.595 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G84 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 MAN _pdbx_entity_branch_link.comp_id_2 MAN _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n D MAN 1 D 1 MAN A 501 MAN 2 n D MAN 2 D 2 MAN A 500 MAN 2 n E MAN 1 E 1 MAN B 501 MAN 2 n E MAN 2 E 2 MAN B 500 MAN 2 n F MAN 1 F 1 MAN C 501 MAN 2 n F MAN 2 F 2 MAN C 500 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 261 1_555 A SG CYS 158 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 136 A CYS 331 1_555 A SG CYS 150 A CYS 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 B SG CYS 66 B CYS 261 1_555 B SG CYS 158 B CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 136 B CYS 331 1_555 B SG CYS 150 B CYS 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 C SG CYS 66 C CYS 261 1_555 C SG CYS 158 C CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 C SG CYS 136 C CYS 331 1_555 C SG CYS 150 C CYS 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 D O2 MAN . D MAN 1 1_555 D C1 MAN . D MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale2 E O2 MAN . E MAN 1 1_555 E C1 MAN . E MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 F O2 MAN . F MAN 1 1_555 F C1 MAN . F MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3G84 _atom_sites.fract_transf_matrix[1][1] 0.017984 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000463 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009254 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017993 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 CA A 1 401 401 CA CA . H 3 CA A 1 402 402 CA CA . I 3 CA A 1 403 403 CA CA . J 3 CA B 1 401 401 CA CA . K 3 CA B 1 402 402 CA CA . L 3 CA B 1 403 403 CA CA . M 3 CA C 1 401 401 CA CA . N 3 CA C 1 402 402 CA CA . O 3 CA C 1 403 403 CA CA . P 4 HOH A 1 3 3 HOH HOH . P 4 HOH A 2 7 7 HOH HOH . P 4 HOH A 3 10 10 HOH HOH . P 4 HOH A 4 17 17 HOH HOH . P 4 HOH A 5 19 19 HOH HOH . P 4 HOH A 6 20 20 HOH HOH . P 4 HOH A 7 24 24 HOH HOH . P 4 HOH A 8 30 30 HOH HOH . P 4 HOH A 9 38 38 HOH HOH . P 4 HOH A 10 47 47 HOH HOH . P 4 HOH A 11 52 52 HOH HOH . P 4 HOH A 12 57 57 HOH HOH . P 4 HOH A 13 58 58 HOH HOH . P 4 HOH A 14 62 62 HOH HOH . P 4 HOH A 15 63 63 HOH HOH . P 4 HOH A 16 65 65 HOH HOH . P 4 HOH A 17 68 68 HOH HOH . P 4 HOH A 18 69 69 HOH HOH . P 4 HOH A 19 71 71 HOH HOH . P 4 HOH A 20 75 75 HOH HOH . P 4 HOH A 21 76 76 HOH HOH . P 4 HOH A 22 81 81 HOH HOH . P 4 HOH A 23 85 85 HOH HOH . P 4 HOH A 24 90 90 HOH HOH . P 4 HOH A 25 91 91 HOH HOH . P 4 HOH A 26 92 92 HOH HOH . P 4 HOH A 27 96 96 HOH HOH . P 4 HOH A 28 97 97 HOH HOH . P 4 HOH A 29 100 100 HOH HOH . P 4 HOH A 30 105 105 HOH HOH . P 4 HOH A 31 106 106 HOH HOH . P 4 HOH A 32 107 107 HOH HOH . P 4 HOH A 33 111 111 HOH HOH . P 4 HOH A 34 112 112 HOH HOH . P 4 HOH A 35 117 117 HOH HOH . P 4 HOH A 36 121 121 HOH HOH . P 4 HOH A 37 128 128 HOH HOH . Q 4 HOH B 1 4 4 HOH HOH . Q 4 HOH B 2 6 6 HOH HOH . Q 4 HOH B 3 13 13 HOH HOH . Q 4 HOH B 4 15 15 HOH HOH . Q 4 HOH B 5 18 18 HOH HOH . Q 4 HOH B 6 22 22 HOH HOH . Q 4 HOH B 7 23 23 HOH HOH . Q 4 HOH B 8 27 27 HOH HOH . Q 4 HOH B 9 29 29 HOH HOH . Q 4 HOH B 10 31 31 HOH HOH . Q 4 HOH B 11 34 34 HOH HOH . Q 4 HOH B 12 35 35 HOH HOH . Q 4 HOH B 13 39 39 HOH HOH . Q 4 HOH B 14 41 41 HOH HOH . Q 4 HOH B 15 42 42 HOH HOH . Q 4 HOH B 16 44 44 HOH HOH . Q 4 HOH B 17 45 45 HOH HOH . Q 4 HOH B 18 48 48 HOH HOH . Q 4 HOH B 19 49 49 HOH HOH . Q 4 HOH B 20 51 51 HOH HOH . Q 4 HOH B 21 54 54 HOH HOH . Q 4 HOH B 22 55 55 HOH HOH . Q 4 HOH B 23 56 56 HOH HOH . Q 4 HOH B 24 70 70 HOH HOH . Q 4 HOH B 25 72 72 HOH HOH . Q 4 HOH B 26 73 73 HOH HOH . Q 4 HOH B 27 74 74 HOH HOH . Q 4 HOH B 28 77 77 HOH HOH . Q 4 HOH B 29 78 78 HOH HOH . Q 4 HOH B 30 80 80 HOH HOH . Q 4 HOH B 31 82 82 HOH HOH . Q 4 HOH B 32 86 86 HOH HOH . Q 4 HOH B 33 87 87 HOH HOH . Q 4 HOH B 34 94 94 HOH HOH . Q 4 HOH B 35 98 98 HOH HOH . Q 4 HOH B 36 99 99 HOH HOH . Q 4 HOH B 37 101 101 HOH HOH . Q 4 HOH B 38 102 102 HOH HOH . Q 4 HOH B 39 103 103 HOH HOH . Q 4 HOH B 40 104 104 HOH HOH . Q 4 HOH B 41 110 110 HOH HOH . Q 4 HOH B 42 116 116 HOH HOH . Q 4 HOH B 43 118 118 HOH HOH . Q 4 HOH B 44 122 122 HOH HOH . Q 4 HOH B 45 125 125 HOH HOH . Q 4 HOH B 46 129 129 HOH HOH . R 4 HOH C 1 1 1 HOH HOH . R 4 HOH C 2 2 2 HOH HOH . R 4 HOH C 3 5 5 HOH HOH . R 4 HOH C 4 8 8 HOH HOH . R 4 HOH C 5 9 9 HOH HOH . R 4 HOH C 6 11 11 HOH HOH . R 4 HOH C 7 12 12 HOH HOH . R 4 HOH C 8 14 14 HOH HOH . R 4 HOH C 9 16 16 HOH HOH . R 4 HOH C 10 21 21 HOH HOH . R 4 HOH C 11 25 25 HOH HOH . R 4 HOH C 12 26 26 HOH HOH . R 4 HOH C 13 28 28 HOH HOH . R 4 HOH C 14 32 32 HOH HOH . R 4 HOH C 15 33 33 HOH HOH . R 4 HOH C 16 36 36 HOH HOH . R 4 HOH C 17 37 37 HOH HOH . R 4 HOH C 18 40 40 HOH HOH . R 4 HOH C 19 43 43 HOH HOH . R 4 HOH C 20 46 46 HOH HOH . R 4 HOH C 21 50 50 HOH HOH . R 4 HOH C 22 53 53 HOH HOH . R 4 HOH C 23 59 59 HOH HOH . R 4 HOH C 24 60 60 HOH HOH . R 4 HOH C 25 61 61 HOH HOH . R 4 HOH C 26 64 64 HOH HOH . R 4 HOH C 27 66 66 HOH HOH . R 4 HOH C 28 67 67 HOH HOH . R 4 HOH C 29 79 79 HOH HOH . R 4 HOH C 30 83 83 HOH HOH . R 4 HOH C 31 84 84 HOH HOH . R 4 HOH C 32 88 88 HOH HOH . R 4 HOH C 33 89 89 HOH HOH . R 4 HOH C 34 93 93 HOH HOH . R 4 HOH C 35 95 95 HOH HOH . R 4 HOH C 36 108 108 HOH HOH . R 4 HOH C 37 109 109 HOH HOH . R 4 HOH C 38 113 113 HOH HOH . R 4 HOH C 39 114 114 HOH HOH . R 4 HOH C 40 115 115 HOH HOH . R 4 HOH C 41 119 119 HOH HOH . R 4 HOH C 42 120 120 HOH HOH . R 4 HOH C 43 123 123 HOH HOH . R 4 HOH C 44 124 124 HOH HOH . R 4 HOH C 45 126 126 HOH HOH . R 4 HOH C 46 127 127 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 3 _atom_site.Cartn_x 60.453 _atom_site.Cartn_y 25.688 _atom_site.Cartn_z 10.983 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.37 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #