data_3G8W # _model_server_result.job_id LLv6iFaZBeXun92Gccd_4w _model_server_result.datetime_utc '2024-11-12 20:42:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g8w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":172}' # _entry.id 3G8W # _exptl.entry_id 3G8W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 189.1 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRATE ANION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3G8W _cell.length_a 96.96 _cell.length_b 110.409 _cell.length_c 220.515 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G8W _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,R,S 1 1 C,D,K,L,M,N,O,P,Q,T,U 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 4 A MSE 1 1_555 A N ASN 5 A ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C LEU 21 A LEU 18 1_555 A N MSE 22 A MSE 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 A C MSE 22 A MSE 19 1_555 A N LYS 23 A LYS 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale4 A C GLN 74 A GLN 71 1_555 A N MSE 75 A MSE 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale5 A C MSE 75 A MSE 72 1_555 A N ASN 76 A ASN 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C LEU 118 A LEU 115 1_555 A N MSE 119 A MSE 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 A C MSE 119 A MSE 116 1_555 A N ILE 120 A ILE 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale8 B C LEU 21 B LEU 18 1_555 B N MSE 22 B MSE 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 B C MSE 22 B MSE 19 1_555 B N LYS 23 B LYS 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 B C GLN 74 B GLN 71 1_555 B N MSE 75 B MSE 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale11 B C MSE 75 B MSE 72 1_555 B N ASN 76 B ASN 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 B C LEU 118 B LEU 115 1_555 B N MSE 119 B MSE 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale13 B C MSE 119 B MSE 116 1_555 B N ILE 120 B ILE 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale14 C C MSE 4 C MSE 1 1_555 C N ASN 5 C ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale15 C C LEU 21 C LEU 18 1_555 C N MSE 22 C MSE 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale16 C C MSE 22 C MSE 19 1_555 C N LYS 23 C LYS 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale17 C C GLN 74 C GLN 71 1_555 C N MSE 75 C MSE 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale18 C C MSE 75 C MSE 72 1_555 C N ASN 76 C ASN 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale19 C C LEU 118 C LEU 115 1_555 C N MSE 119 C MSE 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale20 C C MSE 119 C MSE 116 1_555 C N ILE 120 C ILE 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale21 D C LEU 21 D LEU 18 1_555 D N MSE 22 D MSE 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale22 D C MSE 22 D MSE 19 1_555 D N LYS 23 D LYS 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale23 D C GLN 74 D GLN 71 1_555 D N MSE 75 D MSE 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale24 D C MSE 75 D MSE 72 1_555 D N ASN 76 D ASN 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale25 D C LEU 118 D LEU 115 1_555 D N MSE 119 D MSE 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale26 D C MSE 119 D MSE 116 1_555 D N ILE 120 D ILE 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? # _chem_comp.formula 'C6 H5 O7 -3' _chem_comp.formula_weight 189.1 _chem_comp.id FLC _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRATE ANION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CA FLC sing 83 n n CAC OA1 FLC doub 84 n n CAC OA2 FLC sing 85 n n CA CB FLC sing 86 n n CA HA1 FLC sing 87 n n CA HA2 FLC sing 88 n n CB CBC FLC sing 89 n n CB CG FLC sing 90 n n CB OHB FLC sing 91 n n CBC OB1 FLC doub 92 n n CBC OB2 FLC sing 93 n n CG CGC FLC sing 94 n n CG HG1 FLC sing 95 n n CG HG2 FLC sing 96 n n CGC OG1 FLC doub 97 n n CGC OG2 FLC sing 98 n n OHB HOB FLC sing 99 n n # _atom_sites.entry_id 3G8W _atom_sites.fract_transf_matrix[1][1] 0.010314 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009057 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004535 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NHE A 1 167 1 NHE NHE . F 2 NHE A 1 168 2 NHE NHE . G 2 NHE A 1 169 7 NHE NHE . H 2 NHE B 1 167 3 NHE NHE . I 2 NHE B 1 168 4 NHE NHE . J 2 NHE B 1 169 11 NHE NHE . K 2 NHE C 1 167 5 NHE NHE . L 2 NHE C 1 168 6 NHE NHE . M 2 NHE C 1 169 8 NHE NHE . N 2 NHE C 1 170 10 NHE NHE . O 2 NHE C 1 171 12 NHE NHE . P 3 FLC C 1 172 1 FLC FLC . Q 2 NHE D 1 167 9 NHE NHE . R 4 HOH A 1 170 1 HOH HOH . R 4 HOH A 2 173 2 HOH HOH . R 4 HOH A 3 180 9 HOH HOH . R 4 HOH A 4 183 12 HOH HOH . R 4 HOH A 5 185 14 HOH HOH . R 4 HOH A 6 187 16 HOH HOH . R 4 HOH A 7 190 19 HOH HOH . S 4 HOH B 1 178 7 HOH HOH . S 4 HOH B 2 182 11 HOH HOH . S 4 HOH B 3 186 15 HOH HOH . S 4 HOH B 4 188 17 HOH HOH . S 4 HOH B 5 192 21 HOH HOH . T 4 HOH C 1 174 3 HOH HOH . T 4 HOH C 2 176 5 HOH HOH . T 4 HOH C 3 177 6 HOH HOH . T 4 HOH C 4 179 8 HOH HOH . T 4 HOH C 5 181 10 HOH HOH . T 4 HOH C 6 184 13 HOH HOH . T 4 HOH C 7 189 18 HOH HOH . T 4 HOH C 8 191 20 HOH HOH . U 4 HOH D 1 175 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAC FLC . . . P 3 3.474 46.494 36.238 0.6 94.7 ? CAC FLC 172 C 1 HETATM 2 C CA FLC . . . P 3 4.779 45.851 36.687 0.6 94.23 ? CA FLC 172 C 1 HETATM 3 C CB FLC . . . P 3 4.883 44.361 36.365 0.6 94.15 ? CB FLC 172 C 1 HETATM 4 C CBC FLC . . . P 3 4.085 43.591 37.373 0.6 94.25 ? CBC FLC 172 C 1 HETATM 5 C CG FLC . . . P 3 6.346 43.886 36.414 0.6 93.86 ? CG FLC 172 C 1 HETATM 6 C CGC FLC . . . P 3 6.552 42.39 36.167 0.6 93.46 ? CGC FLC 172 C 1 HETATM 7 O OA1 FLC . . . P 3 2.424 45.818 36.071 0.6 94.55 ? OA1 FLC 172 C 1 HETATM 8 O OA2 FLC . . . P 3 3.498 47.727 36.042 0.6 94.75 ? OA2 FLC 172 C 1 HETATM 9 O OB1 FLC . . . P 3 3.085 42.908 37.019 0.6 93.7 ? OB1 FLC 172 C 1 HETATM 10 O OB2 FLC . . . P 3 4.502 43.669 38.543 0.6 94.46 ? OB2 FLC 172 C 1 HETATM 11 O OG1 FLC . . . P 3 7.419 42.071 35.34 0.6 93.17 ? OG1 FLC 172 C 1 HETATM 12 O OG2 FLC . . . P 3 5.897 41.504 36.767 0.6 92.82 ? OG2 FLC 172 C 1 HETATM 13 O OHB FLC . . . P 3 4.3 44.128 35.081 0.6 94.66 ? OHB FLC 172 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #