data_3G93
#
_model_server_result.job_id            2yMBJzqp07HYB0nK8cWG2A 
_model_server_result.datetime_utc      '2024-11-27 18:14:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3g93 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":501}' 
#
_entry.id    3G93 
#
_exptl.entry_id    3G93 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              234.296 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-(biphenyl-4-ylmethyl)-1H-imidazole 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3G93 
_cell.length_a            86.91 
_cell.length_b            151.815 
_cell.length_c            181.583 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3G93 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 software_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
C,I,J,O 1 1 
D,K,L,P 1 2 
A,B,E,F,G,H,M,N 1 3 
A,E,F,G,M 2 3 
B,H,N 3 3 
C,I,J,O 4 3 
D,K,L,P 5 3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'crystal symmetry operation' 2_655 -x+3/2,-y,z+1/2 -1 0 0 0 -1 0 0 0 1 130.365 0 90.7915 
2 'crystal symmetry operation' 3_645 -x+1,y-1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 86.91 -75.9075 90.7915 
3 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 417 A CYS 436 1_555 E FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc2 G NAD PB2 . A PB2 496 1_555 H FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc3 E FE HEM . A HEM 500 1_555 F NAD PB2 . A PB2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc4 B SG CYS 417 B CYS 436 1_555 H FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc5 C SG CYS 417 C CYS 436 1_555 I FE HEM . C HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc6 I FE HEM . C HEM 500 1_555 J NAD PB2 . C PB2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? 
metalc ? metalc7 D SG CYS 417 D CYS 436 1_555 K FE HEM . D HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc8 K FE HEM . D HEM 500 1_555 L NAD PB2 . D PB2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
#
_chem_comp.formula           'C16 H14 N2' 
_chem_comp.formula_weight    234.296 
_chem_comp.id                PB2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-(biphenyl-4-ylmethyl)-1H-imidazole 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CDB CDC PB2 doub 319 n y 
CDB CDA PB2 sing 320 n y 
CDC CDD PB2 sing 321 n y 
CDD CDE PB2 doub 322 n y 
CDE CDF PB2 sing 323 n y 
CDF CDA PB2 doub 324 n y 
CDA CCD PB2 sing 325 n y 
CCD CCE PB2 doub 326 n y 
CCD CCC PB2 sing 327 n y 
CCE CCF PB2 sing 328 n y 
CCF CCA PB2 doub 329 n y 
CCC CCB PB2 doub 330 n y 
CCB CCA PB2 sing 331 n y 
CCA CAA PB2 sing 332 n n 
CAA NAB PB2 sing 333 n n 
NAB CAF PB2 sing 334 n y 
NAB CAC PB2 sing 335 n y 
CAF CAE PB2 doub 336 n y 
CAE NAD PB2 sing 337 n y 
NAD CAC PB2 doub 338 n y 
CDB HDB PB2 sing 339 n n 
CDC HDC PB2 sing 340 n n 
CDD HDD PB2 sing 341 n n 
CDE HDE PB2 sing 342 n n 
CDF HDF PB2 sing 343 n n 
CCE HCE PB2 sing 344 n n 
CCF HCF PB2 sing 345 n n 
CCC HCC PB2 sing 346 n n 
CCB HCB PB2 sing 347 n n 
CAA HAA PB2 sing 348 n n 
CAA HAAA PB2 sing 349 n n 
CAF HAF PB2 sing 350 n n 
CAE HAE PB2 sing 351 n n 
CAC HAC PB2 sing 352 n n 
#
_atom_sites.entry_id                     3G93 
_atom_sites.fract_transf_matrix[1][1]    0.011506 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006587 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005507 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 500 500 HEM HEM . 
F 3 PB2 A 1 501 501 PB2 PB2 . 
G 3 PB2 A 1 496 496 PB2 PB2 . 
H 2 HEM B 1 500 500 HEM HEM . 
I 2 HEM C 1 500 500 HEM HEM . 
J 3 PB2 C 1 501 501 PB2 PB2 . 
K 2 HEM D 1 500 500 HEM HEM . 
L 3 PB2 D 1 501 501 PB2 PB2 . 
M 4 HOH A 1 3 3 HOH HOH . 
M 4 HOH A 2 8 8 HOH HOH . 
M 4 HOH A 3 9 9 HOH HOH . 
M 4 HOH A 4 10 10 HOH HOH . 
M 4 HOH A 5 14 14 HOH HOH . 
M 4 HOH A 6 17 17 HOH HOH . 
M 4 HOH A 7 497 497 HOH HOH . 
M 4 HOH A 8 498 498 HOH HOH . 
M 4 HOH A 9 499 499 HOH HOH . 
N 4 HOH B 1 2 2 HOH HOH . 
N 4 HOH B 2 5 5 HOH HOH . 
N 4 HOH B 3 6 6 HOH HOH . 
N 4 HOH B 4 7 7 HOH HOH . 
N 4 HOH B 5 18 18 HOH HOH . 
N 4 HOH B 6 496 496 HOH HOH . 
N 4 HOH B 7 497 497 HOH HOH . 
N 4 HOH B 8 498 498 HOH HOH . 
N 4 HOH B 9 499 499 HOH HOH . 
O 4 HOH C 1 12 12 HOH HOH . 
O 4 HOH C 2 13 13 HOH HOH . 
O 4 HOH C 3 15 15 HOH HOH . 
O 4 HOH C 4 16 16 HOH HOH . 
O 4 HOH C 5 496 496 HOH HOH . 
O 4 HOH C 6 497 497 HOH HOH . 
O 4 HOH C 7 498 498 HOH HOH . 
O 4 HOH C 8 499 499 HOH HOH . 
O 4 HOH C 9 502 502 HOH HOH . 
O 4 HOH C 10 503 503 HOH HOH . 
O 4 HOH C 11 504 504 HOH HOH . 
O 4 HOH C 12 505 505 HOH HOH . 
O 4 HOH C 13 506 506 HOH HOH . 
P 4 HOH D 1 1 1 HOH HOH . 
P 4 HOH D 2 4 4 HOH HOH . 
P 4 HOH D 3 11 11 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CDB PB2 . . . J 3 82.672 -3.572 2.569 1 37.29 ? CDB PB2 501 C 1 
HETATM 2 C CDC PB2 . . . J 3 82.541 -2.922 1.373 1 27.17 ? CDC PB2 501 C 1 
HETATM 3 C CDD PB2 . . . J 3 83.465 -3.142 0.34 1 21.27 ? CDD PB2 501 C 1 
HETATM 4 C CDE PB2 . . . J 3 84.537 -4.054 0.555 1 20.01 ? CDE PB2 501 C 1 
HETATM 5 C CDF PB2 . . . J 3 84.66 -4.736 1.781 1 16.85 ? CDF PB2 501 C 1 
HETATM 6 C CDA PB2 . . . J 3 83.781 -4.526 2.792 1 16.41 ? CDA PB2 501 C 1 
HETATM 7 C CCD PB2 . . . J 3 84.002 -5.242 4.129 1 17.97 ? CCD PB2 501 C 1 
HETATM 8 C CCE PB2 . . . J 3 85.271 -5.294 4.644 1 18.6 ? CCE PB2 501 C 1 
HETATM 9 C CCF PB2 . . . J 3 85.54 -5.952 5.855 1 19.12 ? CCF PB2 501 C 1 
HETATM 10 C CCC PB2 . . . J 3 82.879 -5.878 4.859 1 13.98 ? CCC PB2 501 C 1 
HETATM 11 C CCB PB2 . . . J 3 83.138 -6.515 6.043 1 22.48 ? CCB PB2 501 C 1 
HETATM 12 C CCA PB2 . . . J 3 84.456 -6.581 6.569 1 25.91 ? CCA PB2 501 C 1 
HETATM 13 C CAA PB2 . . . J 3 84.731 -7.318 7.892 1 17.21 ? CAA PB2 501 C 1 
HETATM 14 N NAB PB2 . . . J 3 84.716 -8.761 7.695 1 28.49 ? NAB PB2 501 C 1 
HETATM 15 C CAF PB2 . . . J 3 85.728 -9.507 7.309 1 33.17 ? CAF PB2 501 C 1 
HETATM 16 C CAE PB2 . . . J 3 85.301 -10.845 7.215 1 24.38 ? CAE PB2 501 C 1 
HETATM 17 N NAD PB2 . . . J 3 83.992 -10.881 7.564 1 27.13 ? NAD PB2 501 C 1 
HETATM 18 C CAC PB2 . . . J 3 83.602 -9.638 7.862 1 35.55 ? CAC PB2 501 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           18 
#