data_3G99 # _model_server_result.job_id W-B3l4gBlyC9_KrgLO1nBg _model_server_result.datetime_utc '2024-12-11 18:03:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g99 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1}' # _entry.id 3G99 # _exptl.entry_id 3G99 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 123.11 _cell.angle_gamma 90 _cell.entry_id 3G99 _cell.length_a 116.774 _cell.length_b 38.189 _cell.length_c 97.064 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G99 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 5 A CYS 440 1_555 E ZN ZN . A ZN 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc2 A SG CYS 8 A CYS 443 1_555 E ZN ZN . A ZN 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc3 A SG CYS 22 A CYS 457 1_555 E ZN ZN . A ZN 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc4 A SG CYS 25 A CYS 460 1_555 E ZN ZN . A ZN 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc5 A SG CYS 41 A CYS 476 1_555 F ZN ZN . A ZN 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc6 A SG CYS 47 A CYS 482 1_555 F ZN ZN . A ZN 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc7 A SG CYS 57 A CYS 492 1_555 F ZN ZN . A ZN 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc8 A SG CYS 60 A CYS 495 1_555 F ZN ZN . A ZN 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc9 B SG CYS 5 B CYS 440 1_555 H ZN ZN . B ZN 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc10 B SG CYS 8 B CYS 443 1_555 H ZN ZN . B ZN 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc11 B SG CYS 22 B CYS 457 1_555 H ZN ZN . B ZN 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc12 B SG CYS 25 B CYS 460 1_555 H ZN ZN . B ZN 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc13 B SG CYS 41 B CYS 476 1_555 I ZN ZN . B ZN 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc14 B SG CYS 47 B CYS 482 1_555 I ZN ZN . B ZN 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc15 B SG CYS 57 B CYS 492 1_555 I ZN ZN . B ZN 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc16 B SG CYS 60 B CYS 495 1_555 I ZN ZN . B ZN 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? hydrog WATSON-CRICK hydrog1 C N1 DA 2 D DA 2 1_555 D N3 DT 16 C DT 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N6 DA 2 D DA 2 1_555 D O4 DT 16 C DT 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C N1 DG 3 D DG 3 1_555 D N3 DC 15 C DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N2 DG 3 D DG 3 1_555 D O2 DC 15 C DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C O6 DG 3 D DG 3 1_555 D N4 DC 15 C DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C N1 DA 4 D DA 4 1_555 D N3 DT 14 C DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C N6 DA 4 D DA 4 1_555 D O4 DT 14 C DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C N1 DA 5 D DA 5 1_555 D N3 DT 13 C DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 C N6 DA 5 D DA 5 1_555 D O4 DT 13 C DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C N3 DC 6 D DC 6 1_555 D N1 DG 12 C DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N4 DC 6 D DC 6 1_555 D O6 DG 12 C DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C O2 DC 6 D DC 6 1_555 D N2 DG 12 C DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C N1 DA 7 D DA 7 1_555 D N3 DT 11 C DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C N6 DA 7 D DA 7 1_555 D O4 DT 11 C DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C N1 DA 8 D DA 8 1_555 D N3 DT 10 C DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 C N6 DA 8 D DA 8 1_555 D O4 DT 10 C DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C N1 DA 9 D DA 9 1_555 D N3 DT 9 C DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C N6 DA 9 D DA 9 1_555 D O4 DT 9 C DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 C N1 DA 10 D DA 10 1_555 D N3 DT 8 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 C N6 DA 10 D DA 10 1_555 D O4 DT 8 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 C N3 DT 11 D DT 11 1_555 D N1 DA 7 C DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 C O4 DT 11 D DT 11 1_555 D N6 DA 7 C DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 C N1 DG 12 D DG 12 1_555 D N3 DC 6 C DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 C N2 DG 12 D DG 12 1_555 D O2 DC 6 C DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 C O6 DG 12 D DG 12 1_555 D N4 DC 6 C DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 C N3 DT 13 D DT 13 1_555 D N1 DA 5 C DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 C O4 DT 13 D DT 13 1_555 D N6 DA 5 C DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 C N3 DT 14 D DT 14 1_555 D N1 DA 4 C DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 C O4 DT 14 D DT 14 1_555 D N6 DA 4 C DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 C N3 DC 15 D DC 15 1_555 D N1 DG 3 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 C N4 DC 15 D DC 15 1_555 D O6 DG 3 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 C O2 DC 15 D DC 15 1_555 D N2 DG 3 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 232 n n C1 C2 EDO sing 233 n n C1 H11 EDO sing 234 n n C1 H12 EDO sing 235 n n O1 HO1 EDO sing 236 n n C2 O2 EDO sing 237 n n C2 H21 EDO sing 238 n n C2 H22 EDO sing 239 n n O2 HO2 EDO sing 240 n n # _atom_sites.entry_id 3G99 _atom_sites.fract_transf_matrix[1][1] 0.008564 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005585 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026186 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0123 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 ZN A 1 526 518 ZN ZN . F 4 ZN A 1 527 519 ZN ZN . G 5 EDO A 1 1 1 EDO EDO . H 4 ZN B 1 526 517 ZN ZN . I 4 ZN B 1 527 518 ZN ZN . J 5 EDO D 1 17 1 EDO EDO . K 6 BR C 1 17 1 BR BR . L 7 HOH A 1 5 5 HOH HOH . L 7 HOH A 2 10 10 HOH HOH . L 7 HOH A 3 11 11 HOH HOH . L 7 HOH A 4 12 12 HOH HOH . L 7 HOH A 5 13 13 HOH HOH . L 7 HOH A 6 15 15 HOH HOH . L 7 HOH A 7 16 16 HOH HOH . L 7 HOH A 8 17 17 HOH HOH . L 7 HOH A 9 19 19 HOH HOH . L 7 HOH A 10 23 23 HOH HOH . L 7 HOH A 11 30 30 HOH HOH . L 7 HOH A 12 31 31 HOH HOH . L 7 HOH A 13 36 36 HOH HOH . L 7 HOH A 14 38 38 HOH HOH . L 7 HOH A 15 39 39 HOH HOH . L 7 HOH A 16 40 40 HOH HOH . L 7 HOH A 17 41 41 HOH HOH . L 7 HOH A 18 44 44 HOH HOH . L 7 HOH A 19 48 48 HOH HOH . L 7 HOH A 20 51 51 HOH HOH . L 7 HOH A 21 54 54 HOH HOH . L 7 HOH A 22 55 55 HOH HOH . L 7 HOH A 23 56 56 HOH HOH . L 7 HOH A 24 60 60 HOH HOH . L 7 HOH A 25 62 62 HOH HOH . L 7 HOH A 26 63 63 HOH HOH . L 7 HOH A 27 64 64 HOH HOH . L 7 HOH A 28 65 65 HOH HOH . L 7 HOH A 29 67 67 HOH HOH . L 7 HOH A 30 71 71 HOH HOH . L 7 HOH A 31 74 74 HOH HOH . L 7 HOH A 32 75 75 HOH HOH . L 7 HOH A 33 77 77 HOH HOH . L 7 HOH A 34 78 78 HOH HOH . L 7 HOH A 35 79 79 HOH HOH . L 7 HOH A 36 81 81 HOH HOH . L 7 HOH A 37 83 83 HOH HOH . L 7 HOH A 38 84 84 HOH HOH . L 7 HOH A 39 87 87 HOH HOH . L 7 HOH A 40 89 89 HOH HOH . L 7 HOH A 41 90 90 HOH HOH . L 7 HOH A 42 91 91 HOH HOH . L 7 HOH A 43 93 93 HOH HOH . L 7 HOH A 44 95 95 HOH HOH . M 7 HOH B 1 4 4 HOH HOH . M 7 HOH B 2 6 6 HOH HOH . M 7 HOH B 3 7 7 HOH HOH . M 7 HOH B 4 9 9 HOH HOH . M 7 HOH B 5 14 14 HOH HOH . M 7 HOH B 6 20 20 HOH HOH . M 7 HOH B 7 25 25 HOH HOH . M 7 HOH B 8 26 26 HOH HOH . M 7 HOH B 9 27 27 HOH HOH . M 7 HOH B 10 29 29 HOH HOH . M 7 HOH B 11 33 33 HOH HOH . M 7 HOH B 12 35 35 HOH HOH . M 7 HOH B 13 37 37 HOH HOH . M 7 HOH B 14 42 42 HOH HOH . M 7 HOH B 15 47 47 HOH HOH . M 7 HOH B 16 49 49 HOH HOH . M 7 HOH B 17 52 52 HOH HOH . M 7 HOH B 18 72 72 HOH HOH . M 7 HOH B 19 73 73 HOH HOH . M 7 HOH B 20 80 80 HOH HOH . M 7 HOH B 21 86 86 HOH HOH . M 7 HOH B 22 88 88 HOH HOH . M 7 HOH B 23 94 94 HOH HOH . M 7 HOH B 24 96 96 HOH HOH . N 7 HOH D 1 18 18 HOH HOH . N 7 HOH D 2 19 2 HOH HOH . N 7 HOH D 3 22 22 HOH HOH . N 7 HOH D 4 32 32 HOH HOH . N 7 HOH D 5 43 43 HOH HOH . N 7 HOH D 6 46 46 HOH HOH . N 7 HOH D 7 59 59 HOH HOH . N 7 HOH D 8 68 68 HOH HOH . N 7 HOH D 9 70 70 HOH HOH . N 7 HOH D 10 76 76 HOH HOH . N 7 HOH D 11 82 82 HOH HOH . N 7 HOH D 12 85 85 HOH HOH . N 7 HOH D 13 92 92 HOH HOH . O 7 HOH C 1 18 8 HOH HOH . O 7 HOH C 2 21 21 HOH HOH . O 7 HOH C 3 24 24 HOH HOH . O 7 HOH C 4 28 28 HOH HOH . O 7 HOH C 5 34 34 HOH HOH . O 7 HOH C 6 45 45 HOH HOH . O 7 HOH C 7 50 50 HOH HOH . O 7 HOH C 8 53 53 HOH HOH . O 7 HOH C 9 57 57 HOH HOH . O 7 HOH C 10 58 58 HOH HOH . O 7 HOH C 11 61 61 HOH HOH . O 7 HOH C 12 66 66 HOH HOH . O 7 HOH C 13 69 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 5 6.932 -18.297 27.72 1 65.4 ? C1 EDO 1 A 1 HETATM 2 O O1 EDO . . . G 5 5.636 -18.943 27.225 1 46.24 ? O1 EDO 1 A 1 HETATM 3 C C2 EDO . . . G 5 6.24 -17.498 28.981 1 56.39 ? C2 EDO 1 A 1 HETATM 4 O O2 EDO . . . G 5 7.438 -16.96 29.72 1 39.01 ? O2 EDO 1 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 389 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #