data_3G9D
#
_model_server_result.job_id            mzjf3W3L7HFKsefpZGd1JA 
_model_server_result.datetime_utc      '2024-12-01 06:32:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3g9d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":299}' 
#
_entry.id    3G9D 
#
_exptl.entry_id    3G9D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3G9D 
_cell.length_a            163.866 
_cell.length_b            163.866 
_cell.length_c            46.274 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3G9D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 28 A GLU 28 1_555 D MG MG . A MG 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc2 A OG1 THR 59 A THR 59 1_555 C MG MG . A MG 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? 
metalc ? metalc3 A OD1 ASP 60 A ASP 60 1_555 C MG MG . A MG 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? 
metalc ? metalc4 A OD1 ASP 61 A ASP 61 1_555 C MG MG . A MG 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc5 A OD1 ASP 243 A ASP 243 1_555 D MG MG . A MG 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc6 A OD2 ASP 245 A ASP 245 1_555 C MG MG . A MG 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? 
metalc ? metalc7 A OD1 ASP 245 A ASP 245 1_555 D MG MG . A MG 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc8 C MG MG . A MG 298 1_555 G O HOH . A HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? 
metalc ? metalc9 C MG MG . A MG 298 1_555 G O HOH . A HOH 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? 
metalc ? metalc10 D MG MG . A MG 299 1_555 G O HOH . A HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? 
metalc ? metalc11 D MG MG . A MG 299 1_555 G O HOH . A HOH 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc12 D MG MG . A MG 299 1_555 G O HOH . A HOH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc13 B OD1 ASP 60 B ASP 60 1_555 F MG MG . B MG 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc14 B OD1 ASP 61 B ASP 61 1_555 F MG MG . B MG 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc15 B OD1 ASP 243 B ASP 243 1_555 E MG MG . B MG 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc16 B OD2 ASP 245 B ASP 245 1_555 F MG MG . B MG 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc17 E MG MG . B MG 298 1_555 H O HOH . B HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc18 E MG MG . B MG 298 1_555 H O HOH . B HOH 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3G9D 
_atom_sites.fract_transf_matrix[1][1]    0.006103 
_atom_sites.fract_transf_matrix[1][2]    0.003523 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007047 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02161 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 298 1 MG MG . 
D 2 MG A 1 299 2 MG MG . 
E 2 MG B 1 298 3 MG MG . 
F 2 MG B 1 299 4 MG MG . 
G 3 HOH A 1 300 2 HOH HOH . 
G 3 HOH A 2 301 3 HOH HOH . 
G 3 HOH A 3 302 4 HOH HOH . 
G 3 HOH A 4 303 6 HOH HOH . 
G 3 HOH A 5 304 7 HOH HOH . 
G 3 HOH A 6 305 8 HOH HOH . 
G 3 HOH A 7 306 12 HOH HOH . 
G 3 HOH A 8 307 15 HOH HOH . 
G 3 HOH A 9 308 17 HOH HOH . 
G 3 HOH A 10 309 18 HOH HOH . 
G 3 HOH A 11 310 20 HOH HOH . 
G 3 HOH A 12 311 21 HOH HOH . 
G 3 HOH A 13 312 24 HOH HOH . 
G 3 HOH A 14 313 25 HOH HOH . 
G 3 HOH A 15 314 30 HOH HOH . 
G 3 HOH A 16 315 31 HOH HOH . 
G 3 HOH A 17 316 32 HOH HOH . 
G 3 HOH A 18 317 33 HOH HOH . 
G 3 HOH A 19 318 34 HOH HOH . 
G 3 HOH A 20 319 36 HOH HOH . 
G 3 HOH A 21 320 37 HOH HOH . 
G 3 HOH A 22 321 38 HOH HOH . 
G 3 HOH A 23 322 40 HOH HOH . 
G 3 HOH A 24 323 41 HOH HOH . 
G 3 HOH A 25 324 42 HOH HOH . 
G 3 HOH A 26 325 43 HOH HOH . 
G 3 HOH A 27 326 44 HOH HOH . 
G 3 HOH A 28 327 45 HOH HOH . 
G 3 HOH A 29 328 49 HOH HOH . 
G 3 HOH A 30 329 50 HOH HOH . 
G 3 HOH A 31 330 51 HOH HOH . 
G 3 HOH A 32 331 52 HOH HOH . 
G 3 HOH A 33 332 53 HOH HOH . 
G 3 HOH A 34 333 63 HOH HOH . 
G 3 HOH A 35 334 64 HOH HOH . 
G 3 HOH A 36 335 65 HOH HOH . 
G 3 HOH A 37 336 66 HOH HOH . 
G 3 HOH A 38 337 67 HOH HOH . 
G 3 HOH A 39 338 68 HOH HOH . 
H 3 HOH B 1 300 1 HOH HOH . 
H 3 HOH B 2 301 5 HOH HOH . 
H 3 HOH B 3 302 9 HOH HOH . 
H 3 HOH B 4 303 10 HOH HOH . 
H 3 HOH B 5 304 11 HOH HOH . 
H 3 HOH B 6 305 13 HOH HOH . 
H 3 HOH B 7 306 14 HOH HOH . 
H 3 HOH B 8 307 16 HOH HOH . 
H 3 HOH B 9 308 19 HOH HOH . 
H 3 HOH B 10 309 22 HOH HOH . 
H 3 HOH B 11 310 23 HOH HOH . 
H 3 HOH B 12 311 26 HOH HOH . 
H 3 HOH B 13 312 27 HOH HOH . 
H 3 HOH B 14 313 28 HOH HOH . 
H 3 HOH B 15 314 29 HOH HOH . 
H 3 HOH B 16 315 35 HOH HOH . 
H 3 HOH B 17 316 39 HOH HOH . 
H 3 HOH B 18 317 46 HOH HOH . 
H 3 HOH B 19 318 47 HOH HOH . 
H 3 HOH B 20 319 48 HOH HOH . 
H 3 HOH B 21 320 54 HOH HOH . 
H 3 HOH B 22 321 55 HOH HOH . 
H 3 HOH B 23 322 56 HOH HOH . 
H 3 HOH B 24 323 57 HOH HOH . 
H 3 HOH B 25 324 58 HOH HOH . 
H 3 HOH B 26 325 59 HOH HOH . 
H 3 HOH B 27 326 60 HOH HOH . 
H 3 HOH B 28 327 61 HOH HOH . 
H 3 HOH B 29 328 62 HOH HOH . 
H 3 HOH B 30 329 69 HOH HOH . 
H 3 HOH B 31 330 70 HOH HOH . 
H 3 HOH B 32 331 71 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               64.33 
_atom_site.Cartn_y               83.008 
_atom_site.Cartn_z               -15.919 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        55.39 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           299 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           449 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#