data_3G9L # _model_server_result.job_id XiPRvg_g1Z9gQrybAUgYOg _model_server_result.datetime_utc '2025-03-04 06:59:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g9l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3G9L # _exptl.entry_id 3G9L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 430.428 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3Z)-1-[(6-fluoro-4H-1,3-benzodioxin-8-yl)methyl]-4-[(E)-2-phenylethenyl]-1H-indole-2,3-dione 3-oxime' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3G9L _cell.length_a 50.366 _cell.length_b 71.859 _cell.length_c 107.071 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G9L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H19 F N2 O4' _chem_comp.formula_weight 430.428 _chem_comp.id J67 _chem_comp.mon_nstd_flag . _chem_comp.name '(3Z)-1-[(6-fluoro-4H-1,3-benzodioxin-8-yl)methyl]-4-[(E)-2-phenylethenyl]-1H-indole-2,3-dione 3-oxime' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 O1 J67 sing 173 n n O1 HO1 J67 sing 174 n n C3 N2 J67 doub 175 z n C4 C3 J67 sing 176 n n C32 C3 J67 sing 177 n n N6 C4 J67 sing 178 n n O5 C4 J67 doub 179 n n C7 N6 J67 sing 180 n n N6 C19 J67 sing 181 n n C7 C8 J67 sing 182 n n C7 H7 J67 sing 183 n n C7 H7A J67 sing 184 n n C18 C8 J67 doub 185 n y C8 C9 J67 sing 186 n y C9 C10 J67 doub 187 n y C9 H9 J67 sing 188 n n C12 C10 J67 sing 189 n y C10 F11 J67 sing 190 n n C13 C12 J67 doub 191 n y C12 H12 J67 sing 192 n n C18 C13 J67 sing 193 n y C14 C13 J67 sing 194 n n O15 C14 J67 sing 195 n n C14 H14 J67 sing 196 n n C14 H14A J67 sing 197 n n C16 O15 J67 sing 198 n n C16 O17 J67 sing 199 n n C16 H16 J67 sing 200 n n C16 H16A J67 sing 201 n n O17 C18 J67 sing 202 n n C20 C19 J67 doub 203 n y C19 C32 J67 sing 204 n y C20 C21 J67 sing 205 n y C20 H20 J67 sing 206 n n C21 C22 J67 doub 207 n y C21 H21 J67 sing 208 n n C22 C23 J67 sing 209 n y C22 H22 J67 sing 210 n n C32 C23 J67 doub 211 e y C23 C24 J67 sing 212 n n C24 C25 J67 doub 213 n n C24 H24 J67 sing 214 n n C25 C26 J67 sing 215 n n C25 H25 J67 sing 216 n n C31 C26 J67 doub 217 n y C26 C27 J67 sing 218 n y C27 C28 J67 doub 219 n y C27 H27 J67 sing 220 n n C29 C28 J67 sing 221 n y C28 H28 J67 sing 222 n n C30 C29 J67 doub 223 n y C29 H29 J67 sing 224 n n C31 C30 J67 sing 225 n y C30 H30 J67 sing 226 n n C31 H31 J67 sing 227 n n # _atom_sites.entry_id 3G9L _atom_sites.fract_transf_matrix[1][1] 0.019855 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013916 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00934 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 J67 X 1 1 1 J67 J67 . C 3 HOH X 1 2 2 HOH HOH . C 3 HOH X 2 3 3 HOH HOH . C 3 HOH X 3 4 4 HOH HOH . C 3 HOH X 4 5 5 HOH HOH . C 3 HOH X 5 7 7 HOH HOH . C 3 HOH X 6 8 8 HOH HOH . C 3 HOH X 7 10 10 HOH HOH . C 3 HOH X 8 11 11 HOH HOH . C 3 HOH X 9 12 12 HOH HOH . C 3 HOH X 10 15 15 HOH HOH . C 3 HOH X 11 16 16 HOH HOH . C 3 HOH X 12 18 18 HOH HOH . C 3 HOH X 13 19 19 HOH HOH . C 3 HOH X 14 21 21 HOH HOH . C 3 HOH X 15 23 23 HOH HOH . C 3 HOH X 16 24 24 HOH HOH . C 3 HOH X 17 25 25 HOH HOH . C 3 HOH X 18 26 26 HOH HOH . C 3 HOH X 19 27 27 HOH HOH . C 3 HOH X 20 28 28 HOH HOH . C 3 HOH X 21 29 29 HOH HOH . C 3 HOH X 22 30 30 HOH HOH . C 3 HOH X 23 31 31 HOH HOH . C 3 HOH X 24 32 32 HOH HOH . C 3 HOH X 25 34 34 HOH HOH . C 3 HOH X 26 35 35 HOH HOH . C 3 HOH X 27 37 37 HOH HOH . C 3 HOH X 28 403 1 HOH HOH . C 3 HOH X 29 404 39 HOH HOH . C 3 HOH X 30 405 43 HOH HOH . C 3 HOH X 31 406 45 HOH HOH . C 3 HOH X 32 407 46 HOH HOH . C 3 HOH X 33 408 47 HOH HOH . C 3 HOH X 34 409 49 HOH HOH . C 3 HOH X 35 410 51 HOH HOH . C 3 HOH X 36 411 53 HOH HOH . C 3 HOH X 37 412 55 HOH HOH . C 3 HOH X 38 413 56 HOH HOH . C 3 HOH X 39 414 57 HOH HOH . C 3 HOH X 40 415 60 HOH HOH . C 3 HOH X 41 416 63 HOH HOH . C 3 HOH X 42 417 65 HOH HOH . C 3 HOH X 43 418 66 HOH HOH . C 3 HOH X 44 419 68 HOH HOH . C 3 HOH X 45 420 69 HOH HOH . C 3 HOH X 46 421 72 HOH HOH . C 3 HOH X 47 422 74 HOH HOH . C 3 HOH X 48 423 75 HOH HOH . C 3 HOH X 49 424 78 HOH HOH . C 3 HOH X 50 425 82 HOH HOH . C 3 HOH X 51 426 84 HOH HOH . C 3 HOH X 52 427 87 HOH HOH . C 3 HOH X 53 428 88 HOH HOH . C 3 HOH X 54 429 91 HOH HOH . C 3 HOH X 55 430 95 HOH HOH . C 3 HOH X 56 431 96 HOH HOH . C 3 HOH X 57 432 97 HOH HOH . C 3 HOH X 58 433 101 HOH HOH . C 3 HOH X 59 434 105 HOH HOH . C 3 HOH X 60 435 109 HOH HOH . C 3 HOH X 61 436 110 HOH HOH . C 3 HOH X 62 437 111 HOH HOH . C 3 HOH X 63 438 113 HOH HOH . C 3 HOH X 64 439 114 HOH HOH . C 3 HOH X 65 440 115 HOH HOH . C 3 HOH X 66 441 118 HOH HOH . C 3 HOH X 67 442 119 HOH HOH . C 3 HOH X 68 443 120 HOH HOH . C 3 HOH X 69 444 121 HOH HOH . C 3 HOH X 70 445 122 HOH HOH . C 3 HOH X 71 446 123 HOH HOH . C 3 HOH X 72 447 127 HOH HOH . C 3 HOH X 73 448 128 HOH HOH . C 3 HOH X 74 449 132 HOH HOH . C 3 HOH X 75 450 134 HOH HOH . C 3 HOH X 76 451 136 HOH HOH . C 3 HOH X 77 452 137 HOH HOH . C 3 HOH X 78 453 138 HOH HOH . C 3 HOH X 79 454 139 HOH HOH . C 3 HOH X 80 455 143 HOH HOH . C 3 HOH X 81 456 144 HOH HOH . C 3 HOH X 82 457 145 HOH HOH . C 3 HOH X 83 458 146 HOH HOH . C 3 HOH X 84 459 147 HOH HOH . C 3 HOH X 85 460 149 HOH HOH . C 3 HOH X 86 461 150 HOH HOH . C 3 HOH X 87 462 151 HOH HOH . C 3 HOH X 88 463 152 HOH HOH . C 3 HOH X 89 464 153 HOH HOH . C 3 HOH X 90 465 154 HOH HOH . C 3 HOH X 91 466 155 HOH HOH . C 3 HOH X 92 467 158 HOH HOH . C 3 HOH X 93 468 159 HOH HOH . C 3 HOH X 94 469 160 HOH HOH . C 3 HOH X 95 470 161 HOH HOH . C 3 HOH X 96 471 162 HOH HOH . C 3 HOH X 97 472 163 HOH HOH . C 3 HOH X 98 473 164 HOH HOH . C 3 HOH X 99 474 165 HOH HOH . C 3 HOH X 100 475 166 HOH HOH . C 3 HOH X 101 476 167 HOH HOH . C 3 HOH X 102 477 169 HOH HOH . C 3 HOH X 103 478 170 HOH HOH . C 3 HOH X 104 479 179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 J67 . . . B 2 17.983 6.256 33.048 1 36.81 ? O1 J67 1 X 1 HETATM 2 N N2 J67 . . . B 2 18.753 7.431 32.949 1 33.27 ? N2 J67 1 X 1 HETATM 3 C C3 J67 . . . B 2 19.772 7.355 32.167 1 33.27 ? C3 J67 1 X 1 HETATM 4 C C4 J67 . . . B 2 20.217 6.177 31.387 1 34.19 ? C4 J67 1 X 1 HETATM 5 O O5 J67 . . . B 2 19.645 5.105 31.307 1 35.6 ? O5 J67 1 X 1 HETATM 6 N N6 J67 . . . B 2 21.373 6.499 30.798 1 33.85 ? N6 J67 1 X 1 HETATM 7 C C7 J67 . . . B 2 22.069 5.586 29.896 1 33.98 ? C7 J67 1 X 1 HETATM 8 C C8 J67 . . . B 2 23.005 4.674 30.632 1 37.39 ? C8 J67 1 X 1 HETATM 9 C C9 J67 . . . B 2 22.526 3.748 31.535 1 36.38 ? C9 J67 1 X 1 HETATM 10 C C10 J67 . . . B 2 23.425 2.925 32.194 1 38.45 ? C10 J67 1 X 1 HETATM 11 F F11 J67 . . . B 2 22.957 2.01 33.075 1 37.99 ? F11 J67 1 X 1 HETATM 12 C C12 J67 . . . B 2 24.793 3.029 31.941 1 39.23 ? C12 J67 1 X 1 HETATM 13 C C13 J67 . . . B 2 25.262 3.965 31.026 1 39.29 ? C13 J67 1 X 1 HETATM 14 C C14 J67 . . . B 2 26.733 4.104 30.721 1 40.56 ? C14 J67 1 X 1 HETATM 15 O O15 J67 . . . B 2 26.871 4.648 29.39 1 42.35 ? O15 J67 1 X 1 HETATM 16 C C16 J67 . . . B 2 26.18 5.89 29.198 1 40.31 ? C16 J67 1 X 1 HETATM 17 O O17 J67 . . . B 2 24.774 5.713 29.457 1 40.13 ? O17 J67 1 X 1 HETATM 18 C C18 J67 . . . B 2 24.362 4.782 30.365 1 38.22 ? C18 J67 1 X 1 HETATM 19 C C19 J67 . . . B 2 21.724 7.828 31.067 1 33.07 ? C19 J67 1 X 1 HETATM 20 C C20 J67 . . . B 2 22.78 8.627 30.639 1 32.45 ? C20 J67 1 X 1 HETATM 21 C C21 J67 . . . B 2 22.86 9.951 31.03 1 32.7 ? C21 J67 1 X 1 HETATM 22 C C22 J67 . . . B 2 21.897 10.51 31.859 1 34.96 ? C22 J67 1 X 1 HETATM 23 C C23 J67 . . . B 2 20.811 9.733 32.294 1 34.61 ? C23 J67 1 X 1 HETATM 24 C C24 J67 . . . B 2 19.746 10.287 33.151 1 35.5 ? C24 J67 1 X 1 HETATM 25 C C25 J67 . . . B 2 19.621 11.622 33.221 1 37.42 ? C25 J67 1 X 1 HETATM 26 C C26 J67 . . . B 2 18.587 12.293 34.032 1 38.41 ? C26 J67 1 X 1 HETATM 27 C C27 J67 . . . B 2 18.149 11.74 35.252 1 39.52 ? C27 J67 1 X 1 HETATM 28 C C28 J67 . . . B 2 17.178 12.391 35.994 1 39.1 ? C28 J67 1 X 1 HETATM 29 C C29 J67 . . . B 2 16.636 13.586 35.531 1 39.82 ? C29 J67 1 X 1 HETATM 30 C C30 J67 . . . B 2 17.057 14.144 34.323 1 39.79 ? C30 J67 1 X 1 HETATM 31 C C31 J67 . . . B 2 18.031 13.505 33.57 1 38.54 ? C31 J67 1 X 1 HETATM 32 C C32 J67 . . . B 2 20.74 8.402 31.882 1 32.97 ? C32 J67 1 X 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #