data_3G9N # _model_server_result.job_id Kdt8koY4KSXK4pMDiYvNFw _model_server_result.datetime_utc '2024-12-26 20:45:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3g9n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":359}' # _entry.id 3G9N # _exptl.entry_id 3G9N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 404.39 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3Z)-1-[(6-fluoro-4H-1,3-benzodioxin-8-yl)methyl]-4-phenyl-1H-indole-2,3-dione 3-oxime' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3G9N _cell.length_a 50.313 _cell.length_b 72.176 _cell.length_c 107.489 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3G9N _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H17 F N2 O4' _chem_comp.formula_weight 404.39 _chem_comp.id J88 _chem_comp.mon_nstd_flag . _chem_comp.name '(3Z)-1-[(6-fluoro-4H-1,3-benzodioxin-8-yl)methyl]-4-phenyl-1H-indole-2,3-dione 3-oxime' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 N2 J88 sing 173 n n N2 C3 J88 doub 174 n n C3 C4 J88 sing 175 z n C3 C24 J88 sing 176 n n C4 O5 J88 doub 177 n n C4 N6 J88 sing 178 n n N6 C7 J88 sing 179 n n N6 C19 J88 sing 180 n n C7 C8 J88 sing 181 n n C8 C9 J88 doub 182 n y C8 C18 J88 sing 183 n y C9 C10 J88 sing 184 n y C10 F11 J88 sing 185 n n C10 C12 J88 doub 186 n y C12 C13 J88 sing 187 n y C13 C14 J88 sing 188 n n C13 C18 J88 doub 189 n y C14 O15 J88 sing 190 n n O15 C16 J88 sing 191 n n C16 O17 J88 sing 192 n n O17 C18 J88 sing 193 n n C19 C20 J88 doub 194 n y C19 C24 J88 sing 195 n y C20 C21 J88 sing 196 n y C21 C22 J88 doub 197 n y C22 C23 J88 sing 198 n y C23 C24 J88 doub 199 n y C23 C25 J88 sing 200 n y C25 C26 J88 doub 201 n y C25 C30 J88 sing 202 n y C26 C27 J88 sing 203 n y C27 C28 J88 doub 204 n y C28 C29 J88 sing 205 n y C29 C30 J88 doub 206 n y O1 HO1 J88 sing 207 n n C7 H7 J88 sing 208 n n C7 H7A J88 sing 209 n n C9 H9 J88 sing 210 n n C12 H12 J88 sing 211 n n C14 H14 J88 sing 212 n n C14 H14A J88 sing 213 n n C16 H16 J88 sing 214 n n C16 H16A J88 sing 215 n n C20 H20 J88 sing 216 n n C21 H21 J88 sing 217 n n C22 H22 J88 sing 218 n n C26 H26 J88 sing 219 n n C27 H27 J88 sing 220 n n C28 H28 J88 sing 221 n n C29 H29 J88 sing 222 n n C30 H30 J88 sing 223 n n # _atom_sites.entry_id 3G9N _atom_sites.fract_transf_matrix[1][1] 0.019876 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013855 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009303 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 J88 A 1 359 1 J88 J88 . C 3 HOH A 1 360 1 HOH HOH . C 3 HOH A 2 361 2 HOH HOH . C 3 HOH A 3 362 3 HOH HOH . C 3 HOH A 4 363 4 HOH HOH . C 3 HOH A 5 364 5 HOH HOH . C 3 HOH A 6 365 6 HOH HOH . C 3 HOH A 7 366 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 J88 . . . B 2 18.018 29.61 20.844 1 41.06 ? O1 J88 359 A 1 HETATM 2 N N2 J88 . . . B 2 18.776 28.411 20.822 1 41.25 ? N2 J88 359 A 1 HETATM 3 C C3 J88 . . . B 2 19.932 28.37 21.438 1 40.9 ? C3 J88 359 A 1 HETATM 4 C C4 J88 . . . B 2 20.483 29.492 22.208 1 40.34 ? C4 J88 359 A 1 HETATM 5 O O5 J88 . . . B 2 19.965 30.586 22.273 1 40.6 ? O5 J88 359 A 1 HETATM 6 N N6 J88 . . . B 2 21.593 29.06 22.814 1 40.67 ? N6 J88 359 A 1 HETATM 7 C C7 J88 . . . B 2 22.419 29.859 23.708 1 42.12 ? C7 J88 359 A 1 HETATM 8 C C8 J88 . . . B 2 23.276 30.848 22.988 1 42.28 ? C8 J88 359 A 1 HETATM 9 C C9 J88 . . . B 2 22.709 31.757 22.119 1 42.32 ? C9 J88 359 A 1 HETATM 10 C C10 J88 . . . B 2 23.511 32.672 21.471 1 42.69 ? C10 J88 359 A 1 HETATM 11 F F11 J88 . . . B 2 22.94 33.543 20.62 1 42.65 ? F11 J88 359 A 1 HETATM 12 C C12 J88 . . . B 2 24.886 32.686 21.7 1 43.16 ? C12 J88 359 A 1 HETATM 13 C C13 J88 . . . B 2 25.449 31.771 22.58 1 42.76 ? C13 J88 359 A 1 HETATM 14 C C14 J88 . . . B 2 26.93 31.766 22.842 1 42.93 ? C14 J88 359 A 1 HETATM 15 O O15 J88 . . . B 2 27.154 31.16 24.124 1 43.89 ? O15 J88 359 A 1 HETATM 16 C C16 J88 . . . B 2 26.598 29.839 24.218 1 43.78 ? C16 J88 359 A 1 HETATM 17 O O17 J88 . . . B 2 25.169 29.936 24.106 1 43.45 ? O17 J88 359 A 1 HETATM 18 C C18 J88 . . . B 2 24.643 30.848 23.233 1 42.82 ? C18 J88 359 A 1 HETATM 19 C C19 J88 . . . B 2 21.88 27.74 22.5 1 40.97 ? C19 J88 359 A 1 HETATM 20 C C20 J88 . . . B 2 22.954 26.921 22.879 1 41.38 ? C20 J88 359 A 1 HETATM 21 C C21 J88 . . . B 2 23.05 25.616 22.417 1 41.01 ? C21 J88 359 A 1 HETATM 22 C C22 J88 . . . B 2 22.079 25.121 21.571 1 40.78 ? C22 J88 359 A 1 HETATM 23 C C23 J88 . . . B 2 20.993 25.913 21.162 1 41.27 ? C23 J88 359 A 1 HETATM 24 C C24 J88 . . . B 2 20.902 27.252 21.62 1 40.8 ? C24 J88 359 A 1 HETATM 25 C C25 J88 . . . B 2 19.981 25.321 20.235 1 41.4 ? C25 J88 359 A 1 HETATM 26 C C26 J88 . . . B 2 18.993 26.099 19.624 1 41.75 ? C26 J88 359 A 1 HETATM 27 C C27 J88 . . . B 2 18.071 25.541 18.763 1 42.05 ? C27 J88 359 A 1 HETATM 28 C C28 J88 . . . B 2 18.124 24.185 18.488 1 42.08 ? C28 J88 359 A 1 HETATM 29 C C29 J88 . . . B 2 19.087 23.386 19.079 1 42.9 ? C29 J88 359 A 1 HETATM 30 C C30 J88 . . . B 2 20.008 23.952 19.945 1 42.4 ? C30 J88 359 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #