data_3GAI
#
_model_server_result.job_id            kmlo2fuNUdJ5da6SWiyd2A 
_model_server_result.datetime_utc      '2024-10-27 10:18:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gai 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":889}' 
#
_entry.id    3GAI 
#
_exptl.entry_id    3GAI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3GAI 
_cell.length_a            80.745 
_cell.length_b            80.745 
_cell.length_c            89.693 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GAI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 I N N 
? 7 J N N 
? 7 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O PRO 82 A PRO 76 1_555 F K K . A K 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? 
metalc ? metalc2 A O ALA 83 A ALA 77 1_555 F K K . A K 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? 
metalc ? metalc3 A O ASP 85 A ASP 79 1_555 F K K . A K 191 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.654 ? 
metalc ? metalc4 A O HIS 88 A HIS 82 1_555 F K K . A K 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? 
metalc ? metalc5 A OD1 ASN 162 A ASN 156 1_555 D MG MG . A MG 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc6 A OD1 ASP 166 A ASP 160 1_555 E K K . A K 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? 
metalc ? metalc7 A OD2 ASP 166 A ASP 160 1_555 E K K . A K 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? 
metalc ? metalc8 D MG MG . A MG 189 1_555 L O HOH . A HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc9 D MG MG . A MG 189 1_555 L O HOH . A HOH 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc10 D MG MG . A MG 189 1_555 B O2G ATP . A ATP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc11 D MG MG . A MG 189 1_555 B O1B ATP . A ATP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc12 D MG MG . A MG 189 1_555 B O1A ATP . A ATP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc13 E K K . A K 190 1_555 B O1G ATP . A ATP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? 
metalc ? metalc14 E K K . A K 190 1_555 B O2G ATP . A ATP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? 
metalc ? metalc15 E K K . A K 190 1_555 B O2A ATP . A ATP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? 
metalc ? metalc16 E K K . A K 190 1_555 B O1A ATP . A ATP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.383 ? 
metalc ? metalc17 F K K . A K 191 1_555 L O HOH . A HOH 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? 
metalc ? metalc18 F K K . A K 191 1_555 L O HOH . A HOH 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 368 n n 
C1 C2 GOL sing 369 n n 
C1 H11 GOL sing 370 n n 
C1 H12 GOL sing 371 n n 
O1 HO1 GOL sing 372 n n 
C2 O2 GOL sing 373 n n 
C2 C3 GOL sing 374 n n 
C2 H2 GOL sing 375 n n 
O2 HO2 GOL sing 376 n n 
C3 O3 GOL sing 377 n n 
C3 H31 GOL sing 378 n n 
C3 H32 GOL sing 379 n n 
O3 HO3 GOL sing 380 n n 
#
_atom_sites.entry_id                     3GAI 
_atom_sites.fract_transf_matrix[1][1]    0.012385 
_atom_sites.fract_transf_matrix[1][2]    0.00715 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014301 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011149 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ATP A 1 999 999 ATP ATP . 
C 3 B12 A 1 800 800 B12 B12 . 
D 4 MG A 1 189 1 MG MG . 
E 5 K A 1 190 2 K K . 
F 5 K A 1 191 3 K K . 
G 6 CL A 1 192 4 CL CL . 
H 6 CL A 1 193 5 CL CL . 
I 7 GOL A 1 888 888 GOL GOL . 
J 7 GOL A 1 889 889 GOL GOL . 
K 7 GOL A 1 890 890 GOL GOL . 
L 8 HOH A 1 194 5 HOH HOH . 
L 8 HOH A 2 195 7 HOH HOH . 
L 8 HOH A 3 196 8 HOH HOH . 
L 8 HOH A 4 197 9 HOH HOH . 
L 8 HOH A 5 198 10 HOH HOH . 
L 8 HOH A 6 199 12 HOH HOH . 
L 8 HOH A 7 200 13 HOH HOH . 
L 8 HOH A 8 201 14 HOH HOH . 
L 8 HOH A 9 202 15 HOH HOH . 
L 8 HOH A 10 203 16 HOH HOH . 
L 8 HOH A 11 204 17 HOH HOH . 
L 8 HOH A 12 205 18 HOH HOH . 
L 8 HOH A 13 206 19 HOH HOH . 
L 8 HOH A 14 207 20 HOH HOH . 
L 8 HOH A 15 208 21 HOH HOH . 
L 8 HOH A 16 209 23 HOH HOH . 
L 8 HOH A 17 210 24 HOH HOH . 
L 8 HOH A 18 211 26 HOH HOH . 
L 8 HOH A 19 212 27 HOH HOH . 
L 8 HOH A 20 213 28 HOH HOH . 
L 8 HOH A 21 214 29 HOH HOH . 
L 8 HOH A 22 215 30 HOH HOH . 
L 8 HOH A 23 216 31 HOH HOH . 
L 8 HOH A 24 217 32 HOH HOH . 
L 8 HOH A 25 218 33 HOH HOH . 
L 8 HOH A 26 219 34 HOH HOH . 
L 8 HOH A 27 220 35 HOH HOH . 
L 8 HOH A 28 221 36 HOH HOH . 
L 8 HOH A 29 222 37 HOH HOH . 
L 8 HOH A 30 223 38 HOH HOH . 
L 8 HOH A 31 224 39 HOH HOH . 
L 8 HOH A 32 225 40 HOH HOH . 
L 8 HOH A 33 226 41 HOH HOH . 
L 8 HOH A 34 227 42 HOH HOH . 
L 8 HOH A 35 228 43 HOH HOH . 
L 8 HOH A 36 229 44 HOH HOH . 
L 8 HOH A 37 230 45 HOH HOH . 
L 8 HOH A 38 231 46 HOH HOH . 
L 8 HOH A 39 232 47 HOH HOH . 
L 8 HOH A 40 233 48 HOH HOH . 
L 8 HOH A 41 234 49 HOH HOH . 
L 8 HOH A 42 235 50 HOH HOH . 
L 8 HOH A 43 236 52 HOH HOH . 
L 8 HOH A 44 237 53 HOH HOH . 
L 8 HOH A 45 238 54 HOH HOH . 
L 8 HOH A 46 239 55 HOH HOH . 
L 8 HOH A 47 240 56 HOH HOH . 
L 8 HOH A 48 241 57 HOH HOH . 
L 8 HOH A 49 242 59 HOH HOH . 
L 8 HOH A 50 243 60 HOH HOH . 
L 8 HOH A 51 244 61 HOH HOH . 
L 8 HOH A 52 245 62 HOH HOH . 
L 8 HOH A 53 246 63 HOH HOH . 
L 8 HOH A 54 247 64 HOH HOH . 
L 8 HOH A 55 248 66 HOH HOH . 
L 8 HOH A 56 249 67 HOH HOH . 
L 8 HOH A 57 250 68 HOH HOH . 
L 8 HOH A 58 251 69 HOH HOH . 
L 8 HOH A 59 252 70 HOH HOH . 
L 8 HOH A 60 253 71 HOH HOH . 
L 8 HOH A 61 254 72 HOH HOH . 
L 8 HOH A 62 255 74 HOH HOH . 
L 8 HOH A 63 256 75 HOH HOH . 
L 8 HOH A 64 257 76 HOH HOH . 
L 8 HOH A 65 258 80 HOH HOH . 
L 8 HOH A 66 259 81 HOH HOH . 
L 8 HOH A 67 260 82 HOH HOH . 
L 8 HOH A 68 261 83 HOH HOH . 
L 8 HOH A 69 262 84 HOH HOH . 
L 8 HOH A 70 263 85 HOH HOH . 
L 8 HOH A 71 264 86 HOH HOH . 
L 8 HOH A 72 265 87 HOH HOH . 
L 8 HOH A 73 266 88 HOH HOH . 
L 8 HOH A 74 267 89 HOH HOH . 
L 8 HOH A 75 268 90 HOH HOH . 
L 8 HOH A 76 269 91 HOH HOH . 
L 8 HOH A 77 270 92 HOH HOH . 
L 8 HOH A 78 271 94 HOH HOH . 
L 8 HOH A 79 272 95 HOH HOH . 
L 8 HOH A 80 273 96 HOH HOH . 
L 8 HOH A 81 274 97 HOH HOH . 
L 8 HOH A 82 275 98 HOH HOH . 
L 8 HOH A 83 276 99 HOH HOH . 
L 8 HOH A 84 277 100 HOH HOH . 
L 8 HOH A 85 278 102 HOH HOH . 
L 8 HOH A 86 279 104 HOH HOH . 
L 8 HOH A 87 280 107 HOH HOH . 
L 8 HOH A 88 281 109 HOH HOH . 
L 8 HOH A 89 282 110 HOH HOH . 
L 8 HOH A 90 283 111 HOH HOH . 
L 8 HOH A 91 284 112 HOH HOH . 
L 8 HOH A 92 285 113 HOH HOH . 
L 8 HOH A 93 286 114 HOH HOH . 
L 8 HOH A 94 287 115 HOH HOH . 
L 8 HOH A 95 288 117 HOH HOH . 
L 8 HOH A 96 289 118 HOH HOH . 
L 8 HOH A 97 290 119 HOH HOH . 
L 8 HOH A 98 291 120 HOH HOH . 
L 8 HOH A 99 292 121 HOH HOH . 
L 8 HOH A 100 293 122 HOH HOH . 
L 8 HOH A 101 294 123 HOH HOH . 
L 8 HOH A 102 295 124 HOH HOH . 
L 8 HOH A 103 296 125 HOH HOH . 
L 8 HOH A 104 297 126 HOH HOH . 
L 8 HOH A 105 298 127 HOH HOH . 
L 8 HOH A 106 299 128 HOH HOH . 
L 8 HOH A 107 300 129 HOH HOH . 
L 8 HOH A 108 301 130 HOH HOH . 
L 8 HOH A 109 302 131 HOH HOH . 
L 8 HOH A 110 303 132 HOH HOH . 
L 8 HOH A 111 304 133 HOH HOH . 
L 8 HOH A 112 305 134 HOH HOH . 
L 8 HOH A 113 306 135 HOH HOH . 
L 8 HOH A 114 307 136 HOH HOH . 
L 8 HOH A 115 308 137 HOH HOH . 
L 8 HOH A 116 309 138 HOH HOH . 
L 8 HOH A 117 310 139 HOH HOH . 
L 8 HOH A 118 311 140 HOH HOH . 
L 8 HOH A 119 312 141 HOH HOH . 
L 8 HOH A 120 313 143 HOH HOH . 
L 8 HOH A 121 314 144 HOH HOH . 
L 8 HOH A 122 315 145 HOH HOH . 
L 8 HOH A 123 316 146 HOH HOH . 
L 8 HOH A 124 317 147 HOH HOH . 
L 8 HOH A 125 318 148 HOH HOH . 
L 8 HOH A 126 319 149 HOH HOH . 
L 8 HOH A 127 320 150 HOH HOH . 
L 8 HOH A 128 321 151 HOH HOH . 
L 8 HOH A 129 322 152 HOH HOH . 
L 8 HOH A 130 323 153 HOH HOH . 
L 8 HOH A 131 324 154 HOH HOH . 
L 8 HOH A 132 325 155 HOH HOH . 
L 8 HOH A 133 326 156 HOH HOH . 
L 8 HOH A 134 327 157 HOH HOH . 
L 8 HOH A 135 328 158 HOH HOH . 
L 8 HOH A 136 329 159 HOH HOH . 
L 8 HOH A 137 330 160 HOH HOH . 
L 8 HOH A 138 331 161 HOH HOH . 
L 8 HOH A 139 332 162 HOH HOH . 
L 8 HOH A 140 333 163 HOH HOH . 
L 8 HOH A 141 334 164 HOH HOH . 
L 8 HOH A 142 335 165 HOH HOH . 
L 8 HOH A 143 336 166 HOH HOH . 
L 8 HOH A 144 337 167 HOH HOH . 
L 8 HOH A 145 338 168 HOH HOH . 
L 8 HOH A 146 339 169 HOH HOH . 
L 8 HOH A 147 340 170 HOH HOH . 
L 8 HOH A 148 341 171 HOH HOH . 
L 8 HOH A 149 342 172 HOH HOH . 
L 8 HOH A 150 343 174 HOH HOH . 
L 8 HOH A 151 344 175 HOH HOH . 
L 8 HOH A 152 345 176 HOH HOH . 
L 8 HOH A 153 346 177 HOH HOH . 
L 8 HOH A 154 347 178 HOH HOH . 
L 8 HOH A 155 348 179 HOH HOH . 
L 8 HOH A 156 349 180 HOH HOH . 
L 8 HOH A 157 350 181 HOH HOH . 
L 8 HOH A 158 351 182 HOH HOH . 
L 8 HOH A 159 352 183 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 7 4.553 1.721 41.529 1 46.09 ? C1 GOL 889 A 1 
HETATM 2 O O1 GOL . . . J 7 4.206 2.998 41.035 1 43.27 ? O1 GOL 889 A 1 
HETATM 3 C C2 GOL . . . J 7 4.403 1.673 43.05 1 45.71 ? C2 GOL 889 A 1 
HETATM 4 O O2 GOL . . . J 7 5.086 0.563 43.58 1 45.53 ? O2 GOL 889 A 1 
HETATM 5 C C3 GOL . . . J 7 4.933 2.945 43.694 1 43.42 ? C3 GOL 889 A 1 
HETATM 6 O O3 GOL . . . J 7 3.999 3.444 44.643 1 43.98 ? O3 GOL 889 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           247 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#