data_3GAL
#
_model_server_result.job_id            VQERFcIVSswGku_o8SS8_g 
_model_server_result.datetime_utc      '2024-11-25 23:13:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gal 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":999}' 
#
_entry.id    3GAL 
#
_exptl.entry_id    3GAL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              179.171 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-amino-2-deoxy-beta-D-galactopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          115.06 
_cell.angle_gamma         90 
_cell.entry_id            3GAL 
_cell.length_a            95.59 
_cell.length_b            54.62 
_cell.length_c            61.2 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GAL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C6 H13 N O5' 
_chem_comp.formula_weight    179.171 
_chem_comp.id                1GN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-amino-2-deoxy-beta-D-galactopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     beta-D-galactosamine;2-amino-2-deoxy-beta-D-galactose;2-amino-2-deoxy-D-galactose;2-amino-2-deoxy-galactose;2-DEOXY-2-AMINOGALACTOSE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C3 1GN sing 1 n n 
C2 C1 1GN sing 2 n n 
C2 N2 1GN sing 3 n n 
C2 H2 1GN sing 4 n n 
C3 C4 1GN sing 5 n n 
C3 O3 1GN sing 6 n n 
C3 H3 1GN sing 7 n n 
C4 O4 1GN sing 8 n n 
C4 C5 1GN sing 9 n n 
C4 H4 1GN sing 10 n n 
O5 C1 1GN sing 11 n n 
O5 C5 1GN sing 12 n n 
C1 O1 1GN sing 13 n n 
C1 H1 1GN sing 14 n n 
O1 HO1 1GN sing 15 n n 
N2 HN21 1GN sing 16 n n 
N2 HN22 1GN sing 17 n n 
O3 HO3 1GN sing 18 n n 
O4 HO4 1GN sing 19 n n 
C5 C6 1GN sing 20 n n 
C5 H5 1GN sing 21 n n 
C6 O6 1GN sing 22 n n 
C6 H61 1GN sing 23 n n 
C6 H62 1GN sing 24 n n 
O6 HO6 1GN sing 25 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
1GN DGalpNb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
1GN b-D-galactopyranosamine 'COMMON NAME' GMML 1 
1GN b-D-GalpN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
1GN GalN 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3GAL 
_atom_sites.fract_transf_matrix[1][1]    0.010461 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004892 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018308 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018038 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 1GN A 1 998 998 1GN 1GN . 
D 2 1GN B 1 999 999 1GN 1GN . 
E 3 HOH A 1 999 11 HOH HOH . 
E 3 HOH A 2 1000 12 HOH HOH . 
E 3 HOH A 3 1001 13 HOH HOH . 
E 3 HOH A 4 1002 14 HOH HOH . 
E 3 HOH A 5 1003 15 HOH HOH . 
E 3 HOH A 6 1004 16 HOH HOH . 
E 3 HOH A 7 1005 17 HOH HOH . 
E 3 HOH A 8 1006 18 HOH HOH . 
E 3 HOH A 9 1007 19 HOH HOH . 
E 3 HOH A 10 1008 20 HOH HOH . 
E 3 HOH A 11 1009 21 HOH HOH . 
E 3 HOH A 12 1010 22 HOH HOH . 
E 3 HOH A 13 1011 23 HOH HOH . 
E 3 HOH A 14 1012 24 HOH HOH . 
E 3 HOH A 15 1013 25 HOH HOH . 
E 3 HOH A 16 1014 26 HOH HOH . 
E 3 HOH A 17 1015 27 HOH HOH . 
E 3 HOH A 18 1016 28 HOH HOH . 
E 3 HOH A 19 1017 29 HOH HOH . 
E 3 HOH A 20 1018 30 HOH HOH . 
E 3 HOH A 21 1019 31 HOH HOH . 
E 3 HOH A 22 1020 32 HOH HOH . 
E 3 HOH A 23 1021 33 HOH HOH . 
E 3 HOH A 24 1022 34 HOH HOH . 
E 3 HOH A 25 1023 35 HOH HOH . 
E 3 HOH A 26 1024 36 HOH HOH . 
E 3 HOH A 27 1025 37 HOH HOH . 
E 3 HOH A 28 1026 38 HOH HOH . 
E 3 HOH A 29 1027 39 HOH HOH . 
E 3 HOH A 30 1028 40 HOH HOH . 
E 3 HOH A 31 1029 41 HOH HOH . 
E 3 HOH A 32 1030 42 HOH HOH . 
E 3 HOH A 33 1031 43 HOH HOH . 
E 3 HOH A 34 1032 44 HOH HOH . 
E 3 HOH A 35 1033 45 HOH HOH . 
E 3 HOH A 36 1034 46 HOH HOH . 
E 3 HOH A 37 1035 47 HOH HOH . 
E 3 HOH A 38 1036 48 HOH HOH . 
E 3 HOH A 39 1037 49 HOH HOH . 
E 3 HOH A 40 1038 50 HOH HOH . 
E 3 HOH A 41 1039 51 HOH HOH . 
E 3 HOH A 42 1040 52 HOH HOH . 
E 3 HOH A 43 1041 53 HOH HOH . 
E 3 HOH A 44 1042 54 HOH HOH . 
E 3 HOH A 45 1043 55 HOH HOH . 
E 3 HOH A 46 1044 56 HOH HOH . 
E 3 HOH A 47 1045 57 HOH HOH . 
E 3 HOH A 48 1046 59 HOH HOH . 
E 3 HOH A 49 1047 62 HOH HOH . 
E 3 HOH A 50 1048 63 HOH HOH . 
E 3 HOH A 51 1049 64 HOH HOH . 
E 3 HOH A 52 1050 65 HOH HOH . 
E 3 HOH A 53 1051 66 HOH HOH . 
E 3 HOH A 54 1052 67 HOH HOH . 
E 3 HOH A 55 1053 68 HOH HOH . 
E 3 HOH A 56 1054 69 HOH HOH . 
E 3 HOH A 57 1055 70 HOH HOH . 
E 3 HOH A 58 1056 71 HOH HOH . 
E 3 HOH A 59 1057 72 HOH HOH . 
E 3 HOH A 60 1058 73 HOH HOH . 
E 3 HOH A 61 1059 74 HOH HOH . 
E 3 HOH A 62 1060 75 HOH HOH . 
E 3 HOH A 63 1061 76 HOH HOH . 
E 3 HOH A 64 1062 77 HOH HOH . 
F 3 HOH B 1 1000 1 HOH HOH . 
F 3 HOH B 2 1001 2 HOH HOH . 
F 3 HOH B 3 1002 3 HOH HOH . 
F 3 HOH B 4 1003 4 HOH HOH . 
F 3 HOH B 5 1004 5 HOH HOH . 
F 3 HOH B 6 1005 6 HOH HOH . 
F 3 HOH B 7 1006 7 HOH HOH . 
F 3 HOH B 8 1007 8 HOH HOH . 
F 3 HOH B 9 1008 9 HOH HOH . 
F 3 HOH B 10 1009 10 HOH HOH . 
F 3 HOH B 11 1010 58 HOH HOH . 
F 3 HOH B 12 1011 60 HOH HOH . 
F 3 HOH B 13 1012 61 HOH HOH . 
F 3 HOH B 14 1013 78 HOH HOH . 
F 3 HOH B 15 1014 79 HOH HOH . 
F 3 HOH B 16 1015 80 HOH HOH . 
F 3 HOH B 17 1016 81 HOH HOH . 
F 3 HOH B 18 1017 82 HOH HOH . 
F 3 HOH B 19 1018 83 HOH HOH . 
F 3 HOH B 20 1019 84 HOH HOH . 
F 3 HOH B 21 1020 85 HOH HOH . 
F 3 HOH B 22 1021 86 HOH HOH . 
F 3 HOH B 23 1022 87 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 1GN . . . D 2 -19.719 -21.104 -7.161 1 46.67 ? C2 1GN 999 B 1 
HETATM 2 C C3 1GN . . . D 2 -20.272 -19.768 -6.62 1 47.32 ? C3 1GN 999 B 1 
HETATM 3 C C4 1GN . . . D 2 -19.117 -18.813 -6.3 1 45.39 ? C4 1GN 999 B 1 
HETATM 4 O O5 1GN . . . D 2 -17.752 -19.932 -7.988 1 46.26 ? O5 1GN 999 B 1 
HETATM 5 C C1 1GN . . . D 2 -18.826 -20.816 -8.367 1 48.06 ? C1 1GN 999 B 1 
HETATM 6 O O1 1GN . . . D 2 -18.283 -22.002 -8.845 1 52.37 ? O1 1GN 999 B 1 
HETATM 7 N N2 1GN . . . D 2 -20.792 -22.001 -7.549 1 45.08 ? N2 1GN 999 B 1 
HETATM 8 O O3 1GN . . . D 2 -21.047 -19.978 -5.447 1 49.75 ? O3 1GN 999 B 1 
HETATM 9 O O4 1GN . . . D 2 -18.344 -19.332 -5.23 1 46.5 ? O4 1GN 999 B 1 
HETATM 10 C C5 1GN . . . D 2 -18.23 -18.64 -7.529 1 44.21 ? C5 1GN 999 B 1 
HETATM 11 C C6 1GN . . . D 2 -17.02 -17.78 -7.243 1 38.33 ? C6 1GN 999 B 1 
HETATM 12 O O6 1GN . . . D 2 -16.175 -17.694 -8.379 1 38.64 ? O6 1GN 999 B 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           12 
#