data_3GB0 # _model_server_result.job_id lZWkKHXGqzgw6g4LL2Za-w _model_server_result.datetime_utc '2024-11-13 07:13:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gb0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":374}' # _entry.id 3GB0 # _exptl.entry_id 3GB0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.75 _cell.angle_gamma 90 _cell.entry_id 3GB0 _cell.length_a 141.311 _cell.length_b 58.147 _cell.length_c 51.368 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GB0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 1 A GLY 0 1_555 A N MSE 2 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 2 A MSE 1 1_555 A N ILE 3 A ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C PHE 12 A PHE 11 1_555 A N MSE 13 A MSE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale4 A C MSE 13 A MSE 12 1_555 A N GLU 14 A GLU 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 A C THR 48 A THR 47 1_555 A N MSE 49 A MSE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C MSE 49 A MSE 48 1_555 A N ALA 50 A ALA 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C HIS 78 A HIS 77 1_555 A N MSE 79 A MSE 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C MSE 79 A MSE 78 1_555 A N ASP 80 A ASP 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale9 A C SER 115 A SER 114 1_555 A N MSE 116 A MSE 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale10 A C MSE 116 A MSE 115 1_555 A N PHE 117 A PHE 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale11 A C LYS 214 A LYS 213 1_555 A N MSE 215 A MSE 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale12 A C MSE 215 A MSE 214 1_555 A N PRO 216 A PRO 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale13 A C LYS 257 A LYS 256 1_555 A N MSE 258 A MSE 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale14 A C MSE 258 A MSE 257 1_555 A N GLU 259 A GLU 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale15 A C LYS 264 A LYS 263 1_555 A N MSE 265 A MSE 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale16 A C MSE 265 A MSE 264 1_555 A N LYS 266 A LYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale17 A C GLU 275 A GLU 274 1_555 A N MSE 276 A MSE 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale18 A C MSE 276 A MSE 275 1_555 A N GLY 277 A GLY 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale19 A C VAL 286 A VAL 285 1_555 A N MSE 287 A MSE 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale20 A C MSE 287 A MSE 286 1_555 A N TYR 288 A TYR 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3GB0 _atom_sites.fract_transf_matrix[1][1] 0.007077 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000216 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017198 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019476 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 373 1 GOL GOL . C 2 GOL A 1 374 2 GOL GOL . D 2 GOL A 1 375 3 GOL GOL . E 2 GOL A 1 376 4 GOL GOL . F 3 PEG A 1 377 5 PEG PEG . G 3 PEG A 1 378 6 PEG PEG . H 3 PEG A 1 379 7 PEG PEG . I 4 HOH A 1 380 8 HOH HOH . I 4 HOH A 2 381 9 HOH HOH . I 4 HOH A 3 382 10 HOH HOH . I 4 HOH A 4 383 11 HOH HOH . I 4 HOH A 5 384 12 HOH HOH . I 4 HOH A 6 385 13 HOH HOH . I 4 HOH A 7 386 14 HOH HOH . I 4 HOH A 8 387 15 HOH HOH . I 4 HOH A 9 388 16 HOH HOH . I 4 HOH A 10 389 17 HOH HOH . I 4 HOH A 11 390 18 HOH HOH . I 4 HOH A 12 391 19 HOH HOH . I 4 HOH A 13 392 20 HOH HOH . I 4 HOH A 14 393 21 HOH HOH . I 4 HOH A 15 394 22 HOH HOH . I 4 HOH A 16 395 23 HOH HOH . I 4 HOH A 17 396 24 HOH HOH . I 4 HOH A 18 397 25 HOH HOH . I 4 HOH A 19 398 26 HOH HOH . I 4 HOH A 20 399 27 HOH HOH . I 4 HOH A 21 400 28 HOH HOH . I 4 HOH A 22 401 29 HOH HOH . I 4 HOH A 23 402 30 HOH HOH . I 4 HOH A 24 403 31 HOH HOH . I 4 HOH A 25 404 32 HOH HOH . I 4 HOH A 26 405 33 HOH HOH . I 4 HOH A 27 406 34 HOH HOH . I 4 HOH A 28 407 35 HOH HOH . I 4 HOH A 29 408 36 HOH HOH . I 4 HOH A 30 409 37 HOH HOH . I 4 HOH A 31 410 38 HOH HOH . I 4 HOH A 32 411 39 HOH HOH . I 4 HOH A 33 412 40 HOH HOH . I 4 HOH A 34 413 41 HOH HOH . I 4 HOH A 35 414 42 HOH HOH . I 4 HOH A 36 415 43 HOH HOH . I 4 HOH A 37 416 44 HOH HOH . I 4 HOH A 38 417 45 HOH HOH . I 4 HOH A 39 418 46 HOH HOH . I 4 HOH A 40 419 47 HOH HOH . I 4 HOH A 41 420 48 HOH HOH . I 4 HOH A 42 421 49 HOH HOH . I 4 HOH A 43 422 50 HOH HOH . I 4 HOH A 44 423 51 HOH HOH . I 4 HOH A 45 424 52 HOH HOH . I 4 HOH A 46 425 53 HOH HOH . I 4 HOH A 47 426 54 HOH HOH . I 4 HOH A 48 427 55 HOH HOH . I 4 HOH A 49 428 56 HOH HOH . I 4 HOH A 50 429 57 HOH HOH . I 4 HOH A 51 430 58 HOH HOH . I 4 HOH A 52 431 59 HOH HOH . I 4 HOH A 53 432 60 HOH HOH . I 4 HOH A 54 433 61 HOH HOH . I 4 HOH A 55 434 62 HOH HOH . I 4 HOH A 56 435 63 HOH HOH . I 4 HOH A 57 436 64 HOH HOH . I 4 HOH A 58 437 65 HOH HOH . I 4 HOH A 59 438 66 HOH HOH . I 4 HOH A 60 439 67 HOH HOH . I 4 HOH A 61 440 68 HOH HOH . I 4 HOH A 62 441 69 HOH HOH . I 4 HOH A 63 442 70 HOH HOH . I 4 HOH A 64 443 71 HOH HOH . I 4 HOH A 65 444 72 HOH HOH . I 4 HOH A 66 445 73 HOH HOH . I 4 HOH A 67 446 74 HOH HOH . I 4 HOH A 68 447 75 HOH HOH . I 4 HOH A 69 448 76 HOH HOH . I 4 HOH A 70 449 77 HOH HOH . I 4 HOH A 71 450 78 HOH HOH . I 4 HOH A 72 451 79 HOH HOH . I 4 HOH A 73 452 80 HOH HOH . I 4 HOH A 74 453 81 HOH HOH . I 4 HOH A 75 454 82 HOH HOH . I 4 HOH A 76 455 83 HOH HOH . I 4 HOH A 77 456 84 HOH HOH . I 4 HOH A 78 457 85 HOH HOH . I 4 HOH A 79 458 86 HOH HOH . I 4 HOH A 80 459 87 HOH HOH . I 4 HOH A 81 460 88 HOH HOH . I 4 HOH A 82 461 89 HOH HOH . I 4 HOH A 83 462 90 HOH HOH . I 4 HOH A 84 463 91 HOH HOH . I 4 HOH A 85 464 92 HOH HOH . I 4 HOH A 86 465 93 HOH HOH . I 4 HOH A 87 466 94 HOH HOH . I 4 HOH A 88 467 95 HOH HOH . I 4 HOH A 89 468 96 HOH HOH . I 4 HOH A 90 469 97 HOH HOH . I 4 HOH A 91 470 98 HOH HOH . I 4 HOH A 92 471 99 HOH HOH . I 4 HOH A 93 472 100 HOH HOH . I 4 HOH A 94 473 101 HOH HOH . I 4 HOH A 95 474 102 HOH HOH . I 4 HOH A 96 475 103 HOH HOH . I 4 HOH A 97 476 104 HOH HOH . I 4 HOH A 98 477 105 HOH HOH . I 4 HOH A 99 478 106 HOH HOH . I 4 HOH A 100 479 107 HOH HOH . I 4 HOH A 101 480 108 HOH HOH . I 4 HOH A 102 481 109 HOH HOH . I 4 HOH A 103 482 110 HOH HOH . I 4 HOH A 104 483 111 HOH HOH . I 4 HOH A 105 484 112 HOH HOH . I 4 HOH A 106 485 113 HOH HOH . I 4 HOH A 107 486 114 HOH HOH . I 4 HOH A 108 487 115 HOH HOH . I 4 HOH A 109 488 116 HOH HOH . I 4 HOH A 110 489 117 HOH HOH . I 4 HOH A 111 490 118 HOH HOH . I 4 HOH A 112 491 119 HOH HOH . I 4 HOH A 113 492 120 HOH HOH . I 4 HOH A 114 493 121 HOH HOH . I 4 HOH A 115 494 122 HOH HOH . I 4 HOH A 116 495 123 HOH HOH . I 4 HOH A 117 496 124 HOH HOH . I 4 HOH A 118 497 125 HOH HOH . I 4 HOH A 119 498 126 HOH HOH . I 4 HOH A 120 499 127 HOH HOH . I 4 HOH A 121 500 128 HOH HOH . I 4 HOH A 122 501 129 HOH HOH . I 4 HOH A 123 502 130 HOH HOH . I 4 HOH A 124 503 131 HOH HOH . I 4 HOH A 125 504 132 HOH HOH . I 4 HOH A 126 505 133 HOH HOH . I 4 HOH A 127 506 134 HOH HOH . I 4 HOH A 128 507 135 HOH HOH . I 4 HOH A 129 508 136 HOH HOH . I 4 HOH A 130 509 137 HOH HOH . I 4 HOH A 131 510 138 HOH HOH . I 4 HOH A 132 511 139 HOH HOH . I 4 HOH A 133 512 140 HOH HOH . I 4 HOH A 134 513 141 HOH HOH . I 4 HOH A 135 514 142 HOH HOH . I 4 HOH A 136 515 143 HOH HOH . I 4 HOH A 137 516 144 HOH HOH . I 4 HOH A 138 517 145 HOH HOH . I 4 HOH A 139 518 146 HOH HOH . I 4 HOH A 140 519 147 HOH HOH . I 4 HOH A 141 520 148 HOH HOH . I 4 HOH A 142 521 149 HOH HOH . I 4 HOH A 143 522 150 HOH HOH . I 4 HOH A 144 523 151 HOH HOH . I 4 HOH A 145 524 152 HOH HOH . I 4 HOH A 146 525 153 HOH HOH . I 4 HOH A 147 526 154 HOH HOH . I 4 HOH A 148 527 155 HOH HOH . I 4 HOH A 149 528 156 HOH HOH . I 4 HOH A 150 529 157 HOH HOH . I 4 HOH A 151 530 158 HOH HOH . I 4 HOH A 152 531 159 HOH HOH . I 4 HOH A 153 532 160 HOH HOH . I 4 HOH A 154 533 161 HOH HOH . I 4 HOH A 155 534 162 HOH HOH . I 4 HOH A 156 535 163 HOH HOH . I 4 HOH A 157 536 164 HOH HOH . I 4 HOH A 158 537 165 HOH HOH . I 4 HOH A 159 538 166 HOH HOH . I 4 HOH A 160 539 167 HOH HOH . I 4 HOH A 161 540 168 HOH HOH . I 4 HOH A 162 541 169 HOH HOH . I 4 HOH A 163 542 170 HOH HOH . I 4 HOH A 164 543 171 HOH HOH . I 4 HOH A 165 544 172 HOH HOH . I 4 HOH A 166 545 173 HOH HOH . I 4 HOH A 167 546 174 HOH HOH . I 4 HOH A 168 547 175 HOH HOH . I 4 HOH A 169 548 176 HOH HOH . I 4 HOH A 170 549 177 HOH HOH . I 4 HOH A 171 550 178 HOH HOH . I 4 HOH A 172 551 179 HOH HOH . I 4 HOH A 173 552 180 HOH HOH . I 4 HOH A 174 553 181 HOH HOH . I 4 HOH A 175 554 182 HOH HOH . I 4 HOH A 176 555 183 HOH HOH . I 4 HOH A 177 556 184 HOH HOH . I 4 HOH A 178 557 185 HOH HOH . I 4 HOH A 179 558 186 HOH HOH . I 4 HOH A 180 559 187 HOH HOH . I 4 HOH A 181 560 188 HOH HOH . I 4 HOH A 182 561 189 HOH HOH . I 4 HOH A 183 562 190 HOH HOH . I 4 HOH A 184 563 191 HOH HOH . I 4 HOH A 185 564 192 HOH HOH . I 4 HOH A 186 565 193 HOH HOH . I 4 HOH A 187 566 194 HOH HOH . I 4 HOH A 188 567 195 HOH HOH . I 4 HOH A 189 568 196 HOH HOH . I 4 HOH A 190 569 197 HOH HOH . I 4 HOH A 191 570 198 HOH HOH . I 4 HOH A 192 571 199 HOH HOH . I 4 HOH A 193 572 200 HOH HOH . I 4 HOH A 194 573 201 HOH HOH . I 4 HOH A 195 574 202 HOH HOH . I 4 HOH A 196 575 203 HOH HOH . I 4 HOH A 197 576 204 HOH HOH . I 4 HOH A 198 577 205 HOH HOH . I 4 HOH A 199 578 206 HOH HOH . I 4 HOH A 200 579 207 HOH HOH . I 4 HOH A 201 580 208 HOH HOH . I 4 HOH A 202 581 209 HOH HOH . I 4 HOH A 203 582 210 HOH HOH . I 4 HOH A 204 583 211 HOH HOH . I 4 HOH A 205 584 212 HOH HOH . I 4 HOH A 206 585 213 HOH HOH . I 4 HOH A 207 586 214 HOH HOH . I 4 HOH A 208 587 215 HOH HOH . I 4 HOH A 209 588 216 HOH HOH . I 4 HOH A 210 589 217 HOH HOH . I 4 HOH A 211 590 218 HOH HOH . I 4 HOH A 212 591 219 HOH HOH . I 4 HOH A 213 592 220 HOH HOH . I 4 HOH A 214 593 221 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 31.623 36.96 23.014 1 34.31 ? C1 GOL 374 A 1 HETATM 2 O O1 GOL . . . C 2 31.113 38.275 23.134 1 33.39 ? O1 GOL 374 A 1 HETATM 3 C C2 GOL . . . C 2 30.923 36.218 21.869 1 41.33 ? C2 GOL 374 A 1 HETATM 4 O O2 GOL . . . C 2 31.731 35.156 21.392 1 34.59 ? O2 GOL 374 A 1 HETATM 5 C C3 GOL . . . C 2 29.551 35.71 22.321 1 35.48 ? C3 GOL 374 A 1 HETATM 6 O O3 GOL . . . C 2 29.076 34.716 21.452 1 46.11 ? O3 GOL 374 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 6 #