data_3GB2 # _model_server_result.job_id feMZfZjdtld4AvpxsZEj0A _model_server_result.datetime_utc '2024-12-26 17:46:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gb2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":999}' # _entry.id 3GB2 # _exptl.entry_id 3GB2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 338.38 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-methyl-5-(3-{4-[(S)-methylsulfinyl]phenyl}-1-benzofuran-5-yl)-1,3,4-oxadiazole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GB2 _cell.length_a 85.311 _cell.length_b 104.074 _cell.length_c 110.011 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GB2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 185 A SER 215 1_555 A N PTR 186 A PTR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C PTR 186 A PTR 216 1_555 A N ILE 187 A ILE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C18 H14 N2 O3 S' _chem_comp.formula_weight 338.38 _chem_comp.id G3B _chem_comp.mon_nstd_flag . _chem_comp.name 2-methyl-5-(3-{4-[(S)-methylsulfinyl]phenyl}-1-benzofuran-5-yl)-1,3,4-oxadiazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O21 S24 G3B doub 83 n n S24 C18 G3B sing 84 n n S24 C14 G3B sing 85 n n C14 C5 G3B doub 86 n y C14 C6 G3B sing 87 n y C5 C2 G3B sing 88 n y C6 C3 G3B doub 89 n y C3 C10 G3B sing 90 n y C10 C2 G3B doub 91 n y C10 C12 G3B sing 92 n y C12 C9 G3B sing 93 n y C12 C8 G3B doub 94 n y C9 C13 G3B doub 95 n y C9 C7 G3B sing 96 n y C13 O22 G3B sing 97 n y C13 C4 G3B sing 98 n y O22 C8 G3B sing 99 n y C4 C1 G3B doub 100 n y C7 C11 G3B doub 101 n y C11 C1 G3B sing 102 n y C11 C15 G3B sing 103 n y C15 O23 G3B sing 104 n y C15 N19 G3B doub 105 n y O23 C16 G3B sing 106 n y C16 C17 G3B sing 107 n n C16 N20 G3B doub 108 n y N20 N19 G3B sing 109 n y C18 H18 G3B sing 110 n n C18 H18A G3B sing 111 n n C18 H18B G3B sing 112 n n C5 H5 G3B sing 113 n n C6 H6 G3B sing 114 n n C3 H3 G3B sing 115 n n C2 H2 G3B sing 116 n n C8 H8 G3B sing 117 n n C4 H4 G3B sing 118 n n C7 H7 G3B sing 119 n n C1 H1 G3B sing 120 n n C17 H17 G3B sing 121 n n C17 H17A G3B sing 122 n n C17 H17B G3B sing 123 n n # _atom_sites.entry_id 3GB2 _atom_sites.fract_transf_matrix[1][1] 0.011722 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009609 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00909 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 G3B A 1 999 999 G3B G3B . C 3 HOH A 1 1000 1000 HOH HOH . C 3 HOH A 2 1001 1001 HOH HOH . C 3 HOH A 3 1002 1002 HOH HOH . C 3 HOH A 4 1003 1003 HOH HOH . C 3 HOH A 5 1008 1008 HOH HOH . C 3 HOH A 6 1010 1010 HOH HOH . C 3 HOH A 7 1011 1011 HOH HOH . C 3 HOH A 8 1014 1014 HOH HOH . C 3 HOH A 9 1016 1016 HOH HOH . C 3 HOH A 10 1020 1020 HOH HOH . C 3 HOH A 11 1025 1025 HOH HOH . C 3 HOH A 12 1026 1026 HOH HOH . C 3 HOH A 13 1027 1027 HOH HOH . C 3 HOH A 14 1028 1028 HOH HOH . C 3 HOH A 15 1029 1029 HOH HOH . C 3 HOH A 16 1030 1030 HOH HOH . C 3 HOH A 17 1031 1031 HOH HOH . C 3 HOH A 18 1032 1032 HOH HOH . C 3 HOH A 19 1033 1033 HOH HOH . C 3 HOH A 20 1034 1034 HOH HOH . C 3 HOH A 21 1035 1035 HOH HOH . C 3 HOH A 22 1036 1036 HOH HOH . C 3 HOH A 23 1037 1037 HOH HOH . C 3 HOH A 24 1038 1038 HOH HOH . C 3 HOH A 25 1043 1043 HOH HOH . C 3 HOH A 26 1044 1044 HOH HOH . C 3 HOH A 27 1045 1045 HOH HOH . C 3 HOH A 28 1053 1053 HOH HOH . C 3 HOH A 29 1054 1054 HOH HOH . C 3 HOH A 30 1056 1056 HOH HOH . C 3 HOH A 31 1058 1058 HOH HOH . C 3 HOH A 32 1059 1059 HOH HOH . C 3 HOH A 33 1062 1062 HOH HOH . C 3 HOH A 34 1064 1064 HOH HOH . C 3 HOH A 35 1065 1065 HOH HOH . C 3 HOH A 36 1067 1067 HOH HOH . C 3 HOH A 37 1069 1069 HOH HOH . C 3 HOH A 38 1070 1070 HOH HOH . C 3 HOH A 39 1072 1072 HOH HOH . C 3 HOH A 40 1073 1073 HOH HOH . C 3 HOH A 41 1074 1074 HOH HOH . C 3 HOH A 42 1075 1075 HOH HOH . C 3 HOH A 43 1077 1077 HOH HOH . C 3 HOH A 44 1078 1078 HOH HOH . C 3 HOH A 45 1079 1079 HOH HOH . C 3 HOH A 46 1080 1080 HOH HOH . C 3 HOH A 47 1081 1081 HOH HOH . C 3 HOH A 48 1082 1082 HOH HOH . C 3 HOH A 49 1083 1083 HOH HOH . C 3 HOH A 50 1084 1084 HOH HOH . C 3 HOH A 51 1085 1085 HOH HOH . C 3 HOH A 52 1086 1086 HOH HOH . C 3 HOH A 53 1087 1087 HOH HOH . C 3 HOH A 54 1088 1088 HOH HOH . C 3 HOH A 55 1089 1089 HOH HOH . C 3 HOH A 56 1090 1090 HOH HOH . C 3 HOH A 57 1091 1091 HOH HOH . C 3 HOH A 58 1092 1092 HOH HOH . C 3 HOH A 59 1093 1093 HOH HOH . C 3 HOH A 60 1094 1094 HOH HOH . C 3 HOH A 61 1095 1095 HOH HOH . C 3 HOH A 62 1096 1096 HOH HOH . C 3 HOH A 63 1097 1097 HOH HOH . C 3 HOH A 64 1098 1098 HOH HOH . C 3 HOH A 65 1099 1099 HOH HOH . C 3 HOH A 66 1100 1100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O21 G3B . . . B 2 25.26 15.314 4.449 1 43.04 ? O21 G3B 999 A 1 HETATM 2 S S24 G3B . . . B 2 26.578 14.694 4.799 1 37.41 ? S24 G3B 999 A 1 HETATM 3 C C18 G3B . . . B 2 26.703 13.069 4.025 1 38.65 ? C18 G3B 999 A 1 HETATM 4 C C14 G3B . . . B 2 27.828 15.835 4.175 1 35.48 ? C14 G3B 999 A 1 HETATM 5 C C5 G3B . . . B 2 27.484 16.707 3.14 1 35.79 ? C5 G3B 999 A 1 HETATM 6 C C6 G3B . . . B 2 29.108 15.846 4.708 1 30.78 ? C6 G3B 999 A 1 HETATM 7 C C3 G3B . . . B 2 30.042 16.736 4.205 1 31.36 ? C3 G3B 999 A 1 HETATM 8 C C10 G3B . . . B 2 29.696 17.597 3.169 1 31.3 ? C10 G3B 999 A 1 HETATM 9 C C2 G3B . . . B 2 28.417 17.599 2.63 1 31.26 ? C2 G3B 999 A 1 HETATM 10 C C12 G3B . . . B 2 30.711 18.539 2.647 1 30.36 ? C12 G3B 999 A 1 HETATM 11 C C9 G3B . . . B 2 32.035 18.174 2.045 1 29.6 ? C9 G3B 999 A 1 HETATM 12 C C13 G3B . . . B 2 32.645 19.444 1.709 1 27.21 ? C13 G3B 999 A 1 HETATM 13 O O22 G3B . . . B 2 31.788 20.49 2.066 1 29.99 ? O22 G3B 999 A 1 HETATM 14 C C8 G3B . . . B 2 30.567 19.929 2.661 1 30.23 ? C8 G3B 999 A 1 HETATM 15 C C4 G3B . . . B 2 33.883 19.523 1.13 1 25.71 ? C4 G3B 999 A 1 HETATM 16 C C7 G3B . . . B 2 32.688 16.987 1.783 1 30.27 ? C7 G3B 999 A 1 HETATM 17 C C11 G3B . . . B 2 33.94 17.086 1.203 1 32.88 ? C11 G3B 999 A 1 HETATM 18 C C1 G3B . . . B 2 34.507 18.315 0.876 1 31.94 ? C1 G3B 999 A 1 HETATM 19 C C15 G3B . . . B 2 34.689 15.86 0.86 1 34.71 ? C15 G3B 999 A 1 HETATM 20 O O23 G3B . . . B 2 34.408 14.591 1.263 1 35.45 ? O23 G3B 999 A 1 HETATM 21 C C16 G3B . . . B 2 35.336 13.794 0.656 1 39.78 ? C16 G3B 999 A 1 HETATM 22 C C17 G3B . . . B 2 35.229 12.323 0.953 1 40.73 ? C17 G3B 999 A 1 HETATM 23 N N20 G3B . . . B 2 36.175 14.505 -0.111 1 40.71 ? N20 G3B 999 A 1 HETATM 24 N N19 G3B . . . B 2 35.745 15.83 0.023 1 38 ? N19 G3B 999 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #