data_3GB5 # _model_server_result.job_id GPGyv7LRflRO_pJ5skMVkg _model_server_result.datetime_utc '2024-11-24 16:45:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gb5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 3GB5 # _exptl.entry_id 3GB5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3GB5 _cell.length_a 87.756 _cell.length_b 87.756 _cell.length_c 62.652 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GB5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 62.652 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 89 n n N1 C10 FMN doub 90 n n C2 O2 FMN doub 91 n n C2 N3 FMN sing 92 n n N3 C4 FMN sing 93 n n N3 HN3 FMN sing 94 n n C4 O4 FMN doub 95 n n C4 C4A FMN sing 96 n n C4A N5 FMN doub 97 n n C4A C10 FMN sing 98 n n N5 C5A FMN sing 99 n n C5A C6 FMN doub 100 n y C5A C9A FMN sing 101 n y C6 C7 FMN sing 102 n y C6 H6 FMN sing 103 n n C7 C7M FMN sing 104 n n C7 C8 FMN doub 105 n y C7M HM71 FMN sing 106 n n C7M HM72 FMN sing 107 n n C7M HM73 FMN sing 108 n n C8 C8M FMN sing 109 n n C8 C9 FMN sing 110 n y C8M HM81 FMN sing 111 n n C8M HM82 FMN sing 112 n n C8M HM83 FMN sing 113 n n C9 C9A FMN doub 114 n y C9 H9 FMN sing 115 n n C9A N10 FMN sing 116 n n N10 C10 FMN sing 117 n n N10 C1' FMN sing 118 n n C1' C2' FMN sing 119 n n C1' "H1'1" FMN sing 120 n n C1' "H1'2" FMN sing 121 n n C2' O2' FMN sing 122 n n C2' C3' FMN sing 123 n n C2' H2' FMN sing 124 n n O2' HO2' FMN sing 125 n n C3' O3' FMN sing 126 n n C3' C4' FMN sing 127 n n C3' H3' FMN sing 128 n n O3' HO3' FMN sing 129 n n C4' O4' FMN sing 130 n n C4' C5' FMN sing 131 n n C4' H4' FMN sing 132 n n O4' HO4' FMN sing 133 n n C5' O5' FMN sing 134 n n C5' "H5'1" FMN sing 135 n n C5' "H5'2" FMN sing 136 n n O5' P FMN sing 137 n n P O1P FMN doub 138 n n P O2P FMN sing 139 n n P O3P FMN sing 140 n n O2P HOP2 FMN sing 141 n n O3P HOP3 FMN sing 142 n n # _atom_sites.entry_id 3GB5 _atom_sites.fract_transf_matrix[1][1] 0.011395 _atom_sites.fract_transf_matrix[1][2] 0.006579 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015961 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 301 301 FMN FMN . C 3 PO4 A 1 302 302 PO4 PO4 . D 4 ACT A 1 303 303 ACT ACT . E 4 ACT A 1 304 304 ACT ACT . F 5 HOH A 1 401 401 HOH HOH . F 5 HOH A 2 402 402 HOH HOH . F 5 HOH A 3 403 403 HOH HOH . F 5 HOH A 4 404 404 HOH HOH . F 5 HOH A 5 405 405 HOH HOH . F 5 HOH A 6 406 406 HOH HOH . F 5 HOH A 7 407 407 HOH HOH . F 5 HOH A 8 408 408 HOH HOH . F 5 HOH A 9 409 409 HOH HOH . F 5 HOH A 10 410 410 HOH HOH . F 5 HOH A 11 411 411 HOH HOH . F 5 HOH A 12 412 412 HOH HOH . F 5 HOH A 13 413 413 HOH HOH . F 5 HOH A 14 414 414 HOH HOH . F 5 HOH A 15 415 415 HOH HOH . F 5 HOH A 16 416 416 HOH HOH . F 5 HOH A 17 417 417 HOH HOH . F 5 HOH A 18 418 418 HOH HOH . F 5 HOH A 19 419 419 HOH HOH . F 5 HOH A 20 420 420 HOH HOH . F 5 HOH A 21 421 421 HOH HOH . F 5 HOH A 22 422 422 HOH HOH . F 5 HOH A 23 423 423 HOH HOH . F 5 HOH A 24 424 424 HOH HOH . F 5 HOH A 25 425 425 HOH HOH . F 5 HOH A 26 426 426 HOH HOH . F 5 HOH A 27 427 427 HOH HOH . F 5 HOH A 28 428 428 HOH HOH . F 5 HOH A 29 429 429 HOH HOH . F 5 HOH A 30 430 430 HOH HOH . F 5 HOH A 31 431 431 HOH HOH . F 5 HOH A 32 432 432 HOH HOH . F 5 HOH A 33 433 433 HOH HOH . F 5 HOH A 34 434 434 HOH HOH . F 5 HOH A 35 435 435 HOH HOH . F 5 HOH A 36 436 436 HOH HOH . F 5 HOH A 37 437 437 HOH HOH . F 5 HOH A 38 438 438 HOH HOH . F 5 HOH A 39 439 439 HOH HOH . F 5 HOH A 40 440 440 HOH HOH . F 5 HOH A 41 441 441 HOH HOH . F 5 HOH A 42 442 442 HOH HOH . F 5 HOH A 43 443 443 HOH HOH . F 5 HOH A 44 444 444 HOH HOH . F 5 HOH A 45 445 445 HOH HOH . F 5 HOH A 46 446 446 HOH HOH . F 5 HOH A 47 447 447 HOH HOH . F 5 HOH A 48 448 448 HOH HOH . F 5 HOH A 49 449 449 HOH HOH . F 5 HOH A 50 450 450 HOH HOH . F 5 HOH A 51 451 451 HOH HOH . F 5 HOH A 52 452 452 HOH HOH . F 5 HOH A 53 453 453 HOH HOH . F 5 HOH A 54 454 454 HOH HOH . F 5 HOH A 55 455 455 HOH HOH . F 5 HOH A 56 456 456 HOH HOH . F 5 HOH A 57 457 457 HOH HOH . F 5 HOH A 58 458 458 HOH HOH . F 5 HOH A 59 459 459 HOH HOH . F 5 HOH A 60 460 460 HOH HOH . F 5 HOH A 61 461 461 HOH HOH . F 5 HOH A 62 462 462 HOH HOH . F 5 HOH A 63 463 463 HOH HOH . F 5 HOH A 64 464 464 HOH HOH . F 5 HOH A 65 465 465 HOH HOH . F 5 HOH A 66 466 466 HOH HOH . F 5 HOH A 67 467 467 HOH HOH . F 5 HOH A 68 468 468 HOH HOH . F 5 HOH A 69 469 469 HOH HOH . F 5 HOH A 70 470 470 HOH HOH . F 5 HOH A 71 471 471 HOH HOH . F 5 HOH A 72 472 472 HOH HOH . F 5 HOH A 73 473 473 HOH HOH . F 5 HOH A 74 474 474 HOH HOH . F 5 HOH A 75 475 475 HOH HOH . F 5 HOH A 76 476 476 HOH HOH . F 5 HOH A 77 477 477 HOH HOH . F 5 HOH A 78 478 478 HOH HOH . F 5 HOH A 79 479 479 HOH HOH . F 5 HOH A 80 480 480 HOH HOH . F 5 HOH A 81 481 481 HOH HOH . F 5 HOH A 82 482 482 HOH HOH . F 5 HOH A 83 483 483 HOH HOH . F 5 HOH A 84 484 484 HOH HOH . F 5 HOH A 85 485 485 HOH HOH . F 5 HOH A 86 486 486 HOH HOH . F 5 HOH A 87 487 487 HOH HOH . F 5 HOH A 88 488 488 HOH HOH . F 5 HOH A 89 489 489 HOH HOH . F 5 HOH A 90 490 490 HOH HOH . F 5 HOH A 91 491 491 HOH HOH . F 5 HOH A 92 492 492 HOH HOH . F 5 HOH A 93 493 493 HOH HOH . F 5 HOH A 94 494 494 HOH HOH . F 5 HOH A 95 495 495 HOH HOH . F 5 HOH A 96 496 496 HOH HOH . F 5 HOH A 97 497 497 HOH HOH . F 5 HOH A 98 498 498 HOH HOH . F 5 HOH A 99 499 499 HOH HOH . F 5 HOH A 100 500 500 HOH HOH . F 5 HOH A 101 501 501 HOH HOH . F 5 HOH A 102 502 502 HOH HOH . F 5 HOH A 103 503 503 HOH HOH . F 5 HOH A 104 504 504 HOH HOH . F 5 HOH A 105 505 505 HOH HOH . F 5 HOH A 106 506 506 HOH HOH . F 5 HOH A 107 507 507 HOH HOH . F 5 HOH A 108 508 508 HOH HOH . F 5 HOH A 109 509 509 HOH HOH . F 5 HOH A 110 510 510 HOH HOH . F 5 HOH A 111 511 511 HOH HOH . F 5 HOH A 112 512 512 HOH HOH . F 5 HOH A 113 513 513 HOH HOH . F 5 HOH A 114 514 514 HOH HOH . F 5 HOH A 115 515 515 HOH HOH . F 5 HOH A 116 516 516 HOH HOH . F 5 HOH A 117 517 517 HOH HOH . F 5 HOH A 118 518 518 HOH HOH . F 5 HOH A 119 519 519 HOH HOH . F 5 HOH A 120 520 520 HOH HOH . F 5 HOH A 121 521 521 HOH HOH . F 5 HOH A 122 522 522 HOH HOH . F 5 HOH A 123 523 523 HOH HOH . F 5 HOH A 124 524 524 HOH HOH . F 5 HOH A 125 525 525 HOH HOH . F 5 HOH A 126 526 526 HOH HOH . F 5 HOH A 127 527 527 HOH HOH . F 5 HOH A 128 528 528 HOH HOH . F 5 HOH A 129 529 529 HOH HOH . F 5 HOH A 130 530 530 HOH HOH . F 5 HOH A 131 531 531 HOH HOH . F 5 HOH A 132 532 532 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 25.197 48.742 15.777 1 26.45 ? N1 FMN 301 A 1 HETATM 2 C C2 FMN . . . B 2 24.723 49.668 14.88 1 28.28 ? C2 FMN 301 A 1 HETATM 3 O O2 FMN . . . B 2 24.29 49.253 13.808 1 29.78 ? O2 FMN 301 A 1 HETATM 4 N N3 FMN . . . B 2 24.787 51.002 15.121 1 27.93 ? N3 FMN 301 A 1 HETATM 5 C C4 FMN . . . B 2 25.298 51.454 16.3 1 28.88 ? C4 FMN 301 A 1 HETATM 6 O O4 FMN . . . B 2 25.479 52.674 16.463 1 32.04 ? O4 FMN 301 A 1 HETATM 7 C C4A FMN . . . B 2 25.759 50.5 17.242 1 27.77 ? C4A FMN 301 A 1 HETATM 8 N N5 FMN . . . B 2 26.259 50.923 18.457 1 29.56 ? N5 FMN 301 A 1 HETATM 9 C C5A FMN . . . B 2 26.688 49.983 19.405 1 26.84 ? C5A FMN 301 A 1 HETATM 10 C C6 FMN . . . B 2 27.186 50.473 20.623 1 26.99 ? C6 FMN 301 A 1 HETATM 11 C C7 FMN . . . B 2 27.592 49.59 21.617 1 26.38 ? C7 FMN 301 A 1 HETATM 12 C C7M FMN . . . B 2 28.013 50.173 22.963 1 25.26 ? C7M FMN 301 A 1 HETATM 13 C C8 FMN . . . B 2 27.519 48.208 21.364 1 27.58 ? C8 FMN 301 A 1 HETATM 14 C C8M FMN . . . B 2 27.587 47.158 22.493 1 25.11 ? C8M FMN 301 A 1 HETATM 15 C C9 FMN . . . B 2 27.06 47.735 20.119 1 26.27 ? C9 FMN 301 A 1 HETATM 16 C C9A FMN . . . B 2 26.631 48.614 19.133 1 26.72 ? C9A FMN 301 A 1 HETATM 17 N N10 FMN . . . B 2 26.14 48.171 17.904 1 24.36 ? N10 FMN 301 A 1 HETATM 18 C C10 FMN . . . B 2 25.695 49.138 16.984 1 26.58 ? C10 FMN 301 A 1 HETATM 19 C C1' FMN . . . B 2 26.046 46.733 17.53 1 24.86 ? C1' FMN 301 A 1 HETATM 20 C C2' FMN . . . B 2 27.411 46.128 17.152 1 28.11 ? C2' FMN 301 A 1 HETATM 21 O O2' FMN . . . B 2 27.809 46.518 15.836 1 26.92 ? O2' FMN 301 A 1 HETATM 22 C C3' FMN . . . B 2 27.374 44.626 17.304 1 26.23 ? C3' FMN 301 A 1 HETATM 23 O O3' FMN . . . B 2 27.18 44.234 18.656 1 23.57 ? O3' FMN 301 A 1 HETATM 24 C C4' FMN . . . B 2 28.648 43.953 16.727 1 29.17 ? C4' FMN 301 A 1 HETATM 25 O O4' FMN . . . B 2 28.746 44.143 15.316 1 27.81 ? O4' FMN 301 A 1 HETATM 26 C C5' FMN . . . B 2 28.642 42.468 17.011 1 25.73 ? C5' FMN 301 A 1 HETATM 27 O O5' FMN . . . B 2 27.504 41.822 16.437 1 25.89 ? O5' FMN 301 A 1 HETATM 28 P P FMN . . . B 2 26.52 40.92 17.334 1 24.49 ? P FMN 301 A 1 HETATM 29 O O1P FMN . . . B 2 25.477 40.28 16.436 1 26.31 ? O1P FMN 301 A 1 HETATM 30 O O2P FMN . . . B 2 25.84 41.87 18.328 1 25.63 ? O2P FMN 301 A 1 HETATM 31 O O3P FMN . . . B 2 27.259 39.835 17.999 1 23.32 ? O3P FMN 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 627 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #