data_3GB7 # _model_server_result.job_id 9USibqzxZiys4xL3jlwk0A _model_server_result.datetime_utc '2024-11-14 18:08:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gb7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 3GB7 # _exptl.entry_id 3GB7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 625.018 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIACYL GLYCEROL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GB7 _cell.length_a 157.064 _cell.length_b 157.064 _cell.length_c 75.616 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GB7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_645 -x+1,-y-1,z -1 0 0 0 -1 0 0 0 1 157.064 -157.064 0 3 'crystal symmetry operation' 3_545 -y,x-1,z 0 -1 0 1 0 0 0 0 1 0 -157.064 0 4 'crystal symmetry operation' 4_655 y+1,-x,z 0 1 0 -1 0 0 0 0 1 157.064 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 145 A CYS 145 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C39 H76 O5' _chem_comp.formula_weight 625.018 _chem_comp.id DGA _chem_comp.mon_nstd_flag . _chem_comp.name 'DIACYL GLYCEROL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA1 CA2 DGA sing 83 n n CA1 OA1 DGA doub 84 n n CA1 OG1 DGA sing 85 n n CA2 CA3 DGA sing 86 n n CA2 HA21 DGA sing 87 n n CA2 HA22 DGA sing 88 n n CA3 CA4 DGA sing 89 n n CA3 HA31 DGA sing 90 n n CA3 HA32 DGA sing 91 n n CA4 CA5 DGA sing 92 n n CA4 HA41 DGA sing 93 n n CA4 HA42 DGA sing 94 n n CA5 CA6 DGA sing 95 n n CA5 HA51 DGA sing 96 n n CA5 HA52 DGA sing 97 n n CA6 CA7 DGA sing 98 n n CA6 HA61 DGA sing 99 n n CA6 HA62 DGA sing 100 n n CA7 CA8 DGA sing 101 n n CA7 HA71 DGA sing 102 n n CA7 HA72 DGA sing 103 n n CA8 CA9 DGA sing 104 n n CA8 HA81 DGA sing 105 n n CA8 HA82 DGA sing 106 n n CA9 CAA DGA sing 107 n n CA9 HA91 DGA sing 108 n n CA9 HA92 DGA sing 109 n n CAA CBA DGA sing 110 n n CAA HAT1 DGA sing 111 n n CAA HAT2 DGA sing 112 n n CBA CCA DGA sing 113 n n CBA HAE1 DGA sing 114 n n CBA HAE2 DGA sing 115 n n CCA CDA DGA sing 116 n n CCA HAW1 DGA sing 117 n n CCA HAW2 DGA sing 118 n n CDA CEA DGA sing 119 n n CDA HAH1 DGA sing 120 n n CDA HAH2 DGA sing 121 n n CEA CFA DGA sing 122 n n CEA HAF1 DGA sing 123 n n CEA HAF2 DGA sing 124 n n CFA CGA DGA sing 125 n n CFA HAN1 DGA sing 126 n n CFA HAN2 DGA sing 127 n n CGA CHA DGA sing 128 n n CGA HAS1 DGA sing 129 n n CGA HAS2 DGA sing 130 n n CHA CIA DGA sing 131 n n CHA HAV1 DGA sing 132 n n CHA HAV2 DGA sing 133 n n CIA HAG1 DGA sing 134 n n CIA HAG2 DGA sing 135 n n CIA HAG3 DGA sing 136 n n CB1 CB2 DGA sing 137 n n CB1 OB1 DGA doub 138 n n CB1 OG2 DGA sing 139 n n CB2 CB3 DGA sing 140 n n CB2 HB21 DGA sing 141 n n CB2 HB22 DGA sing 142 n n CB3 CB4 DGA sing 143 n n CB3 HB31 DGA sing 144 n n CB3 HB32 DGA sing 145 n n CB4 CB5 DGA sing 146 n n CB4 HB41 DGA sing 147 n n CB4 HB42 DGA sing 148 n n CB5 CB6 DGA sing 149 n n CB5 HB51 DGA sing 150 n n CB5 HB52 DGA sing 151 n n CB6 CB7 DGA sing 152 n n CB6 HB61 DGA sing 153 n n CB6 HB62 DGA sing 154 n n CB7 CB8 DGA sing 155 n n CB7 HB71 DGA sing 156 n n CB7 HB72 DGA sing 157 n n CB8 CB9 DGA sing 158 n n CB8 HB81 DGA sing 159 n n CB8 HB82 DGA sing 160 n n CB9 CAB DGA sing 161 n n CB9 HB91 DGA sing 162 n n CB9 HB92 DGA sing 163 n n CAB CBB DGA sing 164 n n CAB HBT1 DGA sing 165 n n CAB HBT2 DGA sing 166 n n CBB CCB DGA sing 167 n n CBB HBE1 DGA sing 168 n n CBB HBE2 DGA sing 169 n n CCB CDB DGA sing 170 n n CCB HBW1 DGA sing 171 n n CCB HBW2 DGA sing 172 n n CDB CEB DGA sing 173 n n CDB HBH1 DGA sing 174 n n CDB HBH2 DGA sing 175 n n CEB CFB DGA sing 176 n n CEB HBF1 DGA sing 177 n n CEB HBF2 DGA sing 178 n n CFB CGB DGA sing 179 n n CFB HBN1 DGA sing 180 n n CFB HBN2 DGA sing 181 n n CGB CHB DGA sing 182 n n CGB HBS1 DGA sing 183 n n CGB HBS2 DGA sing 184 n n CHB CIB DGA sing 185 n n CHB HBV1 DGA sing 186 n n CHB HBV2 DGA sing 187 n n CIB HBG1 DGA sing 188 n n CIB HBG2 DGA sing 189 n n CIB HBG3 DGA sing 190 n n OG1 CG1 DGA sing 191 n n CG1 CG2 DGA sing 192 n n CG1 HG11 DGA sing 193 n n CG1 HG12 DGA sing 194 n n CG2 OG2 DGA sing 195 n n CG2 CG3 DGA sing 196 n n CG2 HG2 DGA sing 197 n n CG3 OXT DGA sing 198 n n CG3 HG31 DGA sing 199 n n CG3 HG32 DGA sing 200 n n OXT HXT DGA sing 201 n n # _atom_sites.entry_id 3GB7 _atom_sites.fract_transf_matrix[1][1] 0.006367 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006367 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013225 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NI C 1 125 3 NI NI . E 5 DGA C 1 1001 1001 DGA DGA . F 6 HOH C 1 126 1 HOH HOH . F 6 HOH C 2 127 2 HOH HOH . F 6 HOH C 3 128 3 HOH HOH . F 6 HOH C 4 129 4 HOH HOH . F 6 HOH C 5 130 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA1 DGA . . . E 5 87.736 -60.644 28.819 1 94.94 ? CA1 DGA 1001 C 1 HETATM 2 C CA2 DGA . . . E 5 87.79 -62.146 28.972 1 86.97 ? CA2 DGA 1001 C 1 HETATM 3 C CA3 DGA . . . E 5 88.568 -62.54 30.208 1 77.15 ? CA3 DGA 1001 C 1 HETATM 4 C CA4 DGA . . . E 5 87.661 -62.527 31.418 1 70.82 ? CA4 DGA 1001 C 1 HETATM 5 C CA5 DGA . . . E 5 88.405 -62.905 32.69 1 64.61 ? CA5 DGA 1001 C 1 HETATM 6 C CA6 DGA . . . E 5 87.507 -62.854 33.931 1 60.35 ? CA6 DGA 1001 C 1 HETATM 7 C CA7 DGA . . . E 5 88.281 -63.214 35.205 1 57.2 ? CA7 DGA 1001 C 1 HETATM 8 C CA8 DGA . . . E 5 87.406 -63.131 36.466 1 55.91 ? CA8 DGA 1001 C 1 HETATM 9 C CA9 DGA . . . E 5 88.187 -63.477 37.736 1 51.57 ? CA9 DGA 1001 C 1 HETATM 10 O OA1 DGA . . . E 5 87.464 -59.928 29.809 1 100.16 ? OA1 DGA 1001 C 1 HETATM 11 C CB1 DGA . . . E 5 90.265 -59.157 25.904 1 104.34 ? CB1 DGA 1001 C 1 HETATM 12 C CB2 DGA . . . E 5 91.316 -60.053 26.647 1 104.5 ? CB2 DGA 1001 C 1 HETATM 13 C CB3 DGA . . . E 5 91.907 -59.596 28.009 1 104.34 ? CB3 DGA 1001 C 1 HETATM 14 C CB4 DGA . . . E 5 90.916 -59.652 29.2 1 103.3 ? CB4 DGA 1001 C 1 HETATM 15 C CB5 DGA . . . E 5 91.224 -59.338 30.577 1 102.34 ? CB5 DGA 1001 C 1 HETATM 16 C CB6 DGA . . . E 5 92.613 -58.906 31.157 1 101.72 ? CB6 DGA 1001 C 1 HETATM 17 C CB7 DGA . . . E 5 92.933 -59.589 32.528 1 101.25 ? CB7 DGA 1001 C 1 HETATM 18 C CB8 DGA . . . E 5 93.922 -60.774 32.411 0 101.38 ? CB8 DGA 1001 C 1 HETATM 19 C CB9 DGA . . . E 5 94.307 -61.427 33.743 0 99.68 ? CB9 DGA 1001 C 1 HETATM 20 C CAB DGA . . . E 5 95.303 -62.596 33.505 0 98.22 ? CAB DGA 1001 C 1 HETATM 21 C CBB DGA . . . E 5 96.048 -63.051 34.781 1 96.79 ? CBB DGA 1001 C 1 HETATM 22 C CCB DGA . . . E 5 97.23 -64.014 34.464 1 95.32 ? CCB DGA 1001 C 1 HETATM 23 C CDB DGA . . . E 5 97.969 -64.477 35.72 1 94.5 ? CDB DGA 1001 C 1 HETATM 24 C CEB DGA . . . E 5 99.116 -65.434 35.385 1 92.1 ? CEB DGA 1001 C 1 HETATM 25 O OB1 DGA . . . E 5 90.192 -57.927 26.083 1 103.71 ? OB1 DGA 1001 C 1 HETATM 26 O OG1 DGA . . . E 5 88.078 -60.003 27.548 1 99.42 ? OG1 DGA 1001 C 1 HETATM 27 C CG1 DGA . . . E 5 87.428 -60.475 26.332 1 102.22 ? CG1 DGA 1001 C 1 HETATM 28 C CG2 DGA . . . E 5 87.921 -59.654 25.108 1 103.78 ? CG2 DGA 1001 C 1 HETATM 29 O OG2 DGA . . . E 5 89.379 -59.821 24.93 1 104.22 ? OG2 DGA 1001 C 1 HETATM 30 C CG3 DGA . . . E 5 87.242 -60.106 23.789 1 102.85 ? CG3 DGA 1001 C 1 HETATM 31 O OXT DGA . . . E 5 85.805 -59.963 23.843 1 101.87 ? OXT DGA 1001 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 362 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #