data_3GB9
#
_model_server_result.job_id            '_N1MVtlDbgzDYNTipvf7eQ' 
_model_server_result.datetime_utc      '2024-11-05 16:38:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gb9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":300}' 
#
_entry.id    3GB9 
#
_exptl.entry_id    3GB9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              153.117 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-fluoroadenine 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3GB9 
_cell.length_a            71.791 
_cell.length_b            130.648 
_cell.length_c            149.177 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GB9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 Q N N 
? 2 DA N N 
#
_chem_comp.formula           'C5 H4 F N5' 
_chem_comp.formula_weight    153.117 
_chem_comp.id                A2F 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-fluoroadenine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     2-fluoro-7H-purin-6-amine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 F A2F sing 1 n n 
N1 C2 A2F doub 2 n y 
C2 N3 A2F sing 3 n y 
C4 N3 A2F doub 4 n y 
C6 N1 A2F sing 5 n y 
N6 C6 A2F sing 6 n n 
C6 C5 A2F doub 7 n y 
N6 HN6 A2F sing 8 n n 
N6 HN6A A2F sing 9 n n 
N7 C5 A2F sing 10 n y 
C5 C4 A2F sing 11 n y 
N9 C4 A2F sing 12 n y 
N7 C8 A2F sing 13 n y 
C8 N9 A2F doub 14 n y 
C8 H8 A2F sing 15 n n 
N7 HN7 A2F sing 16 n n 
#
_atom_sites.entry_id                     3GB9 
_atom_sites.fract_transf_matrix[1][1]    0.013929 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007654 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006703 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 A2F A 1 300 300 A2F A2F . 
E 3 SO4 A 1 290 3 SO4 SO4 . 
F 3 SO4 A 1 291 4 SO4 SO4 . 
G 3 SO4 A 1 292 10 SO4 SO4 . 
H 3 SO4 A 1 293 12 SO4 SO4 . 
I 3 SO4 A 1 294 13 SO4 SO4 . 
J 3 SO4 A 1 295 16 SO4 SO4 . 
K 3 SO4 A 1 296 20 SO4 SO4 . 
L 3 SO4 A 1 297 23 SO4 SO4 . 
M 3 SO4 A 1 298 25 SO4 SO4 . 
N 3 SO4 A 1 299 29 SO4 SO4 . 
O 3 SO4 A 1 301 30 SO4 SO4 . 
P 3 SO4 A 1 302 31 SO4 SO4 . 
Q 2 A2F B 1 300 300 A2F A2F . 
R 3 SO4 B 1 290 2 SO4 SO4 . 
S 3 SO4 B 1 291 5 SO4 SO4 . 
T 3 SO4 B 1 292 6 SO4 SO4 . 
U 3 SO4 B 1 293 7 SO4 SO4 . 
V 3 SO4 B 1 294 9 SO4 SO4 . 
W 3 SO4 B 1 295 14 SO4 SO4 . 
X 3 SO4 B 1 296 19 SO4 SO4 . 
Y 3 SO4 B 1 297 21 SO4 SO4 . 
Z 3 SO4 B 1 298 24 SO4 SO4 . 
AA 3 SO4 B 1 299 26 SO4 SO4 . 
BA 3 SO4 B 1 301 27 SO4 SO4 . 
CA 3 SO4 B 1 302 28 SO4 SO4 . 
DA 2 A2F C 1 300 300 A2F A2F . 
EA 3 SO4 C 1 290 1 SO4 SO4 . 
FA 3 SO4 C 1 291 8 SO4 SO4 . 
GA 3 SO4 C 1 292 11 SO4 SO4 . 
HA 3 SO4 C 1 293 15 SO4 SO4 . 
IA 3 SO4 C 1 294 17 SO4 SO4 . 
JA 3 SO4 C 1 295 18 SO4 SO4 . 
KA 3 SO4 C 1 296 22 SO4 SO4 . 
LA 3 SO4 C 1 297 32 SO4 SO4 . 
MA 3 SO4 C 1 298 33 SO4 SO4 . 
NA 4 GOL C 1 299 34 GOL GOL . 
OA 5 HOH A 1 306 38 HOH HOH . 
OA 5 HOH A 2 314 46 HOH HOH . 
OA 5 HOH A 3 317 49 HOH HOH . 
OA 5 HOH A 4 318 50 HOH HOH . 
OA 5 HOH A 5 323 55 HOH HOH . 
OA 5 HOH A 6 325 57 HOH HOH . 
OA 5 HOH A 7 327 59 HOH HOH . 
OA 5 HOH A 8 329 61 HOH HOH . 
OA 5 HOH A 9 330 62 HOH HOH . 
OA 5 HOH A 10 335 67 HOH HOH . 
OA 5 HOH A 11 340 72 HOH HOH . 
OA 5 HOH A 12 341 73 HOH HOH . 
OA 5 HOH A 13 343 75 HOH HOH . 
OA 5 HOH A 14 345 77 HOH HOH . 
OA 5 HOH A 15 346 78 HOH HOH . 
OA 5 HOH A 16 349 81 HOH HOH . 
OA 5 HOH A 17 351 83 HOH HOH . 
OA 5 HOH A 18 353 85 HOH HOH . 
OA 5 HOH A 19 356 88 HOH HOH . 
OA 5 HOH A 20 357 89 HOH HOH . 
OA 5 HOH A 21 359 92 HOH HOH . 
OA 5 HOH A 22 366 101 HOH HOH . 
OA 5 HOH A 23 367 102 HOH HOH . 
OA 5 HOH A 24 370 105 HOH HOH . 
OA 5 HOH A 25 372 107 HOH HOH . 
OA 5 HOH A 26 376 112 HOH HOH . 
OA 5 HOH A 27 378 114 HOH HOH . 
OA 5 HOH A 28 380 116 HOH HOH . 
OA 5 HOH A 29 383 119 HOH HOH . 
OA 5 HOH A 30 385 121 HOH HOH . 
OA 5 HOH A 31 388 124 HOH HOH . 
OA 5 HOH A 32 389 125 HOH HOH . 
OA 5 HOH A 33 390 126 HOH HOH . 
OA 5 HOH A 34 393 129 HOH HOH . 
OA 5 HOH A 35 394 130 HOH HOH . 
OA 5 HOH A 36 396 132 HOH HOH . 
OA 5 HOH A 37 398 135 HOH HOH . 
OA 5 HOH A 38 402 139 HOH HOH . 
OA 5 HOH A 39 403 140 HOH HOH . 
OA 5 HOH A 40 410 147 HOH HOH . 
OA 5 HOH A 41 412 149 HOH HOH . 
OA 5 HOH A 42 413 150 HOH HOH . 
OA 5 HOH A 43 415 152 HOH HOH . 
OA 5 HOH A 44 416 153 HOH HOH . 
OA 5 HOH A 45 423 160 HOH HOH . 
OA 5 HOH A 46 424 161 HOH HOH . 
OA 5 HOH A 47 427 164 HOH HOH . 
OA 5 HOH A 48 430 168 HOH HOH . 
OA 5 HOH A 49 431 169 HOH HOH . 
OA 5 HOH A 50 438 176 HOH HOH . 
OA 5 HOH A 51 439 177 HOH HOH . 
OA 5 HOH A 52 442 180 HOH HOH . 
OA 5 HOH A 53 443 181 HOH HOH . 
OA 5 HOH A 54 448 186 HOH HOH . 
OA 5 HOH A 55 450 188 HOH HOH . 
OA 5 HOH A 56 451 189 HOH HOH . 
OA 5 HOH A 57 462 201 HOH HOH . 
OA 5 HOH A 58 465 205 HOH HOH . 
OA 5 HOH A 59 467 207 HOH HOH . 
OA 5 HOH A 60 468 208 HOH HOH . 
OA 5 HOH A 61 469 209 HOH HOH . 
OA 5 HOH A 62 472 212 HOH HOH . 
OA 5 HOH A 63 475 215 HOH HOH . 
OA 5 HOH A 64 476 216 HOH HOH . 
OA 5 HOH A 65 477 217 HOH HOH . 
OA 5 HOH A 66 478 218 HOH HOH . 
OA 5 HOH A 67 480 220 HOH HOH . 
OA 5 HOH A 68 481 221 HOH HOH . 
OA 5 HOH A 69 482 222 HOH HOH . 
OA 5 HOH A 70 484 224 HOH HOH . 
OA 5 HOH A 71 486 226 HOH HOH . 
OA 5 HOH A 72 494 236 HOH HOH . 
OA 5 HOH A 73 496 238 HOH HOH . 
OA 5 HOH A 74 500 242 HOH HOH . 
OA 5 HOH A 75 505 247 HOH HOH . 
OA 5 HOH A 76 507 249 HOH HOH . 
OA 5 HOH A 77 509 251 HOH HOH . 
OA 5 HOH A 78 510 252 HOH HOH . 
OA 5 HOH A 79 511 253 HOH HOH . 
OA 5 HOH A 80 513 255 HOH HOH . 
PA 5 HOH B 1 303 35 HOH HOH . 
PA 5 HOH B 2 305 37 HOH HOH . 
PA 5 HOH B 3 308 40 HOH HOH . 
PA 5 HOH B 4 309 41 HOH HOH . 
PA 5 HOH B 5 310 42 HOH HOH . 
PA 5 HOH B 6 312 44 HOH HOH . 
PA 5 HOH B 7 313 45 HOH HOH . 
PA 5 HOH B 8 319 51 HOH HOH . 
PA 5 HOH B 9 324 56 HOH HOH . 
PA 5 HOH B 10 326 58 HOH HOH . 
PA 5 HOH B 11 333 65 HOH HOH . 
PA 5 HOH B 12 337 69 HOH HOH . 
PA 5 HOH B 13 338 70 HOH HOH . 
PA 5 HOH B 14 352 84 HOH HOH . 
PA 5 HOH B 15 364 99 HOH HOH . 
PA 5 HOH B 16 375 111 HOH HOH . 
PA 5 HOH B 17 377 113 HOH HOH . 
PA 5 HOH B 18 384 120 HOH HOH . 
PA 5 HOH B 19 386 122 HOH HOH . 
PA 5 HOH B 20 387 123 HOH HOH . 
PA 5 HOH B 21 392 128 HOH HOH . 
PA 5 HOH B 22 397 133 HOH HOH . 
PA 5 HOH B 23 400 137 HOH HOH . 
PA 5 HOH B 24 401 138 HOH HOH . 
PA 5 HOH B 25 406 143 HOH HOH . 
PA 5 HOH B 26 407 144 HOH HOH . 
PA 5 HOH B 27 408 145 HOH HOH . 
PA 5 HOH B 28 414 151 HOH HOH . 
PA 5 HOH B 29 417 154 HOH HOH . 
PA 5 HOH B 30 419 156 HOH HOH . 
PA 5 HOH B 31 422 159 HOH HOH . 
PA 5 HOH B 32 425 162 HOH HOH . 
PA 5 HOH B 33 426 163 HOH HOH . 
PA 5 HOH B 34 429 167 HOH HOH . 
PA 5 HOH B 35 432 170 HOH HOH . 
PA 5 HOH B 36 434 172 HOH HOH . 
PA 5 HOH B 37 435 173 HOH HOH . 
PA 5 HOH B 38 437 175 HOH HOH . 
PA 5 HOH B 39 447 185 HOH HOH . 
PA 5 HOH B 40 452 190 HOH HOH . 
PA 5 HOH B 41 453 191 HOH HOH . 
PA 5 HOH B 42 454 192 HOH HOH . 
PA 5 HOH B 43 455 193 HOH HOH . 
PA 5 HOH B 44 457 195 HOH HOH . 
PA 5 HOH B 45 460 198 HOH HOH . 
PA 5 HOH B 46 463 202 HOH HOH . 
PA 5 HOH B 47 466 206 HOH HOH . 
PA 5 HOH B 48 470 210 HOH HOH . 
PA 5 HOH B 49 474 214 HOH HOH . 
PA 5 HOH B 50 479 219 HOH HOH . 
PA 5 HOH B 51 485 225 HOH HOH . 
PA 5 HOH B 52 487 227 HOH HOH . 
PA 5 HOH B 53 488 228 HOH HOH . 
PA 5 HOH B 54 490 231 HOH HOH . 
PA 5 HOH B 55 492 233 HOH HOH . 
PA 5 HOH B 56 493 235 HOH HOH . 
PA 5 HOH B 57 495 237 HOH HOH . 
PA 5 HOH B 58 499 241 HOH HOH . 
PA 5 HOH B 59 501 243 HOH HOH . 
PA 5 HOH B 60 502 244 HOH HOH . 
PA 5 HOH B 61 512 254 HOH HOH . 
QA 5 HOH C 1 304 36 HOH HOH . 
QA 5 HOH C 2 307 39 HOH HOH . 
QA 5 HOH C 3 311 43 HOH HOH . 
QA 5 HOH C 4 315 47 HOH HOH . 
QA 5 HOH C 5 316 48 HOH HOH . 
QA 5 HOH C 6 320 52 HOH HOH . 
QA 5 HOH C 7 321 53 HOH HOH . 
QA 5 HOH C 8 322 54 HOH HOH . 
QA 5 HOH C 9 328 60 HOH HOH . 
QA 5 HOH C 10 331 63 HOH HOH . 
QA 5 HOH C 11 332 64 HOH HOH . 
QA 5 HOH C 12 334 66 HOH HOH . 
QA 5 HOH C 13 336 68 HOH HOH . 
QA 5 HOH C 14 339 71 HOH HOH . 
QA 5 HOH C 15 342 74 HOH HOH . 
QA 5 HOH C 16 344 76 HOH HOH . 
QA 5 HOH C 17 347 79 HOH HOH . 
QA 5 HOH C 18 348 80 HOH HOH . 
QA 5 HOH C 19 350 82 HOH HOH . 
QA 5 HOH C 20 354 86 HOH HOH . 
QA 5 HOH C 21 355 87 HOH HOH . 
QA 5 HOH C 22 358 91 HOH HOH . 
QA 5 HOH C 23 360 93 HOH HOH . 
QA 5 HOH C 24 361 94 HOH HOH . 
QA 5 HOH C 25 362 95 HOH HOH . 
QA 5 HOH C 26 363 96 HOH HOH . 
QA 5 HOH C 27 365 100 HOH HOH . 
QA 5 HOH C 28 368 103 HOH HOH . 
QA 5 HOH C 29 369 104 HOH HOH . 
QA 5 HOH C 30 371 106 HOH HOH . 
QA 5 HOH C 31 373 108 HOH HOH . 
QA 5 HOH C 32 374 109 HOH HOH . 
QA 5 HOH C 33 379 115 HOH HOH . 
QA 5 HOH C 34 381 117 HOH HOH . 
QA 5 HOH C 35 382 118 HOH HOH . 
QA 5 HOH C 36 391 127 HOH HOH . 
QA 5 HOH C 37 395 131 HOH HOH . 
QA 5 HOH C 38 399 136 HOH HOH . 
QA 5 HOH C 39 404 141 HOH HOH . 
QA 5 HOH C 40 405 142 HOH HOH . 
QA 5 HOH C 41 409 146 HOH HOH . 
QA 5 HOH C 42 411 148 HOH HOH . 
QA 5 HOH C 43 418 155 HOH HOH . 
QA 5 HOH C 44 420 157 HOH HOH . 
QA 5 HOH C 45 421 158 HOH HOH . 
QA 5 HOH C 46 428 165 HOH HOH . 
QA 5 HOH C 47 433 171 HOH HOH . 
QA 5 HOH C 48 436 174 HOH HOH . 
QA 5 HOH C 49 440 178 HOH HOH . 
QA 5 HOH C 50 441 179 HOH HOH . 
QA 5 HOH C 51 444 182 HOH HOH . 
QA 5 HOH C 52 445 183 HOH HOH . 
QA 5 HOH C 53 446 184 HOH HOH . 
QA 5 HOH C 54 449 187 HOH HOH . 
QA 5 HOH C 55 456 194 HOH HOH . 
QA 5 HOH C 56 458 196 HOH HOH . 
QA 5 HOH C 57 459 197 HOH HOH . 
QA 5 HOH C 58 461 199 HOH HOH . 
QA 5 HOH C 59 464 203 HOH HOH . 
QA 5 HOH C 60 471 211 HOH HOH . 
QA 5 HOH C 61 473 213 HOH HOH . 
QA 5 HOH C 62 483 223 HOH HOH . 
QA 5 HOH C 63 489 229 HOH HOH . 
QA 5 HOH C 64 491 232 HOH HOH . 
QA 5 HOH C 65 497 239 HOH HOH . 
QA 5 HOH C 66 498 240 HOH HOH . 
QA 5 HOH C 67 503 245 HOH HOH . 
QA 5 HOH C 68 504 246 HOH HOH . 
QA 5 HOH C 69 506 248 HOH HOH . 
QA 5 HOH C 70 508 250 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 F F A2F . . . Q 2 -18.99 27.847 -50.568 1 50.68 ? F A2F 300 B 1 
HETATM 2 C C2 A2F . . . Q 2 -18.123 28.556 -49.827 1 50.26 ? C2 A2F 300 B 1 
HETATM 3 N N3 A2F . . . Q 2 -17.406 27.88 -48.884 1 48.41 ? N3 A2F 300 B 1 
HETATM 4 N N1 A2F . . . Q 2 -17.98 29.906 -50.006 1 46.63 ? N1 A2F 300 B 1 
HETATM 5 C C6 A2F . . . Q 2 -17.1 30.614 -49.222 1 44.97 ? C6 A2F 300 B 1 
HETATM 6 N N6 A2F . . . Q 2 -16.911 31.961 -49.348 1 41.55 ? N6 A2F 300 B 1 
HETATM 7 C C5 A2F . . . Q 2 -16.375 29.932 -48.256 1 46.66 ? C5 A2F 300 B 1 
HETATM 8 C C4 A2F . . . Q 2 -16.536 28.559 -48.089 1 48.24 ? C4 A2F 300 B 1 
HETATM 9 N N7 A2F . . . Q 2 -15.442 30.308 -47.362 1 48.57 ? N7 A2F 300 B 1 
HETATM 10 C C8 A2F . . . Q 2 -15.075 29.238 -46.701 1 46.84 ? C8 A2F 300 B 1 
HETATM 11 N N9 A2F . . . Q 2 -15.702 28.186 -47.109 1 47.46 ? N9 A2F 300 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           11 
#