data_3GBJ # _model_server_result.job_id mYydmTJn9buOgSK9Mu3dww _model_server_result.datetime_utc '2025-08-31 02:37:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gbj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":358}' # _entry.id 3GBJ # _exptl.entry_id 3GBJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight ? _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'UNKNOWN ATOM OR ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.8 _cell.angle_gamma 90 _cell.entry_id 3GBJ _cell.length_a 74.229 _cell.length_b 86.52 _cell.length_c 94.948 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GBJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,O 1 1 B,H,I,J,K,P 2 1 C,L,M,N,Q 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 J N N ? 4 K N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 107 A SER 110 1_555 E MG MG . A MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc2 O O HOH . A HOH 363 1_555 E MG MG . A MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc3 O O HOH . A HOH 364 1_555 E MG MG . A MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc4 O O HOH . A HOH 394 1_555 E MG MG . A MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc5 E MG MG . A MG 2000 1_555 D O1B ADP . A ADP 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc6 P O HOH . B HOH 359 1_555 I MG MG . B MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc7 P O HOH . B HOH 360 1_555 I MG MG . B MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc8 P O HOH . B HOH 361 1_555 I MG MG . B MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc9 P O HOH . B HOH 362 1_555 I MG MG . B MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc10 I MG MG . B MG 2000 1_555 H O1B ADP . B ADP 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc11 Q O HOH . C HOH 1 1_555 M MG MG . C MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc12 Q O HOH . C HOH 2 1_555 M MG MG . C MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc13 C OG SER 107 C SER 110 1_555 M MG MG . C MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc14 Q O HOH . C HOH 358 1_555 M MG MG . C MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc15 Q O HOH . C HOH 359 1_555 M MG MG . C MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc16 M MG MG . C MG 2000 1_555 L O1B ADP . C ADP 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? # _chem_comp.formula ? _chem_comp.formula_weight ? _chem_comp.id UNX _chem_comp.mon_nstd_flag . _chem_comp.name 'UNKNOWN ATOM OR ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3GBJ _atom_sites.fract_transf_matrix[1][1] 0.013472 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004067 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011558 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011002 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ADP A 1 2001 2001 ADP ADP . E 3 MG A 1 2000 2000 MG MG . F 4 UNX A 1 1 1 UNX UNX . G 4 UNX A 1 358 4 UNX UNX . H 2 ADP B 1 2001 2001 ADP ADP . I 3 MG B 1 2000 2000 MG MG . J 4 UNX B 1 2 2 UNX UNX . K 4 UNX B 1 358 5 UNX UNX . L 2 ADP C 1 2001 2001 ADP ADP . M 3 MG C 1 2000 2000 MG MG . N 4 UNX C 1 3 3 UNX UNX . O 5 HOH A 1 359 4 HOH HOH . O 5 HOH A 2 360 5 HOH HOH . O 5 HOH A 3 361 6 HOH HOH . O 5 HOH A 4 362 7 HOH HOH . O 5 HOH A 5 363 8 HOH HOH . O 5 HOH A 6 364 9 HOH HOH . O 5 HOH A 7 365 15 HOH HOH . O 5 HOH A 8 366 16 HOH HOH . O 5 HOH A 9 367 21 HOH HOH . O 5 HOH A 10 368 30 HOH HOH . O 5 HOH A 11 369 45 HOH HOH . O 5 HOH A 12 370 66 HOH HOH . O 5 HOH A 13 371 68 HOH HOH . O 5 HOH A 14 372 70 HOH HOH . O 5 HOH A 15 373 71 HOH HOH . O 5 HOH A 16 374 87 HOH HOH . O 5 HOH A 17 375 90 HOH HOH . O 5 HOH A 18 376 96 HOH HOH . O 5 HOH A 19 377 100 HOH HOH . O 5 HOH A 20 378 105 HOH HOH . O 5 HOH A 21 379 113 HOH HOH . O 5 HOH A 22 380 114 HOH HOH . O 5 HOH A 23 381 117 HOH HOH . O 5 HOH A 24 382 122 HOH HOH . O 5 HOH A 25 383 136 HOH HOH . O 5 HOH A 26 384 137 HOH HOH . O 5 HOH A 27 385 139 HOH HOH . O 5 HOH A 28 386 140 HOH HOH . O 5 HOH A 29 387 141 HOH HOH . O 5 HOH A 30 388 142 HOH HOH . O 5 HOH A 31 389 143 HOH HOH . O 5 HOH A 32 390 144 HOH HOH . O 5 HOH A 33 391 145 HOH HOH . O 5 HOH A 34 392 146 HOH HOH . O 5 HOH A 35 393 147 HOH HOH . O 5 HOH A 36 394 148 HOH HOH . O 5 HOH A 37 395 171 HOH HOH . O 5 HOH A 38 396 172 HOH HOH . O 5 HOH A 39 397 173 HOH HOH . P 5 HOH B 1 359 10 HOH HOH . P 5 HOH B 2 360 11 HOH HOH . P 5 HOH B 3 361 12 HOH HOH . P 5 HOH B 4 362 13 HOH HOH . P 5 HOH B 5 363 17 HOH HOH . P 5 HOH B 6 364 18 HOH HOH . P 5 HOH B 7 365 25 HOH HOH . P 5 HOH B 8 366 27 HOH HOH . P 5 HOH B 9 367 28 HOH HOH . P 5 HOH B 10 368 34 HOH HOH . P 5 HOH B 11 369 35 HOH HOH . P 5 HOH B 12 370 36 HOH HOH . P 5 HOH B 13 371 37 HOH HOH . P 5 HOH B 14 372 40 HOH HOH . P 5 HOH B 15 373 43 HOH HOH . P 5 HOH B 16 374 46 HOH HOH . P 5 HOH B 17 375 47 HOH HOH . P 5 HOH B 18 376 48 HOH HOH . P 5 HOH B 19 377 50 HOH HOH . P 5 HOH B 20 378 51 HOH HOH . P 5 HOH B 21 379 52 HOH HOH . P 5 HOH B 22 380 56 HOH HOH . P 5 HOH B 23 381 57 HOH HOH . P 5 HOH B 24 382 58 HOH HOH . P 5 HOH B 25 383 59 HOH HOH . P 5 HOH B 26 384 61 HOH HOH . P 5 HOH B 27 385 65 HOH HOH . P 5 HOH B 28 386 67 HOH HOH . P 5 HOH B 29 387 72 HOH HOH . P 5 HOH B 30 388 74 HOH HOH . P 5 HOH B 31 389 76 HOH HOH . P 5 HOH B 32 390 77 HOH HOH . P 5 HOH B 33 391 78 HOH HOH . P 5 HOH B 34 392 82 HOH HOH . P 5 HOH B 35 393 84 HOH HOH . P 5 HOH B 36 394 85 HOH HOH . P 5 HOH B 37 395 89 HOH HOH . P 5 HOH B 38 396 92 HOH HOH . P 5 HOH B 39 397 93 HOH HOH . P 5 HOH B 40 398 94 HOH HOH . P 5 HOH B 41 399 97 HOH HOH . P 5 HOH B 42 400 101 HOH HOH . P 5 HOH B 43 401 109 HOH HOH . P 5 HOH B 44 402 110 HOH HOH . P 5 HOH B 45 403 116 HOH HOH . P 5 HOH B 46 404 119 HOH HOH . P 5 HOH B 47 405 121 HOH HOH . P 5 HOH B 48 406 126 HOH HOH . P 5 HOH B 49 407 127 HOH HOH . P 5 HOH B 50 408 132 HOH HOH . P 5 HOH B 51 409 133 HOH HOH . P 5 HOH B 52 410 134 HOH HOH . P 5 HOH B 53 411 135 HOH HOH . P 5 HOH B 54 412 149 HOH HOH . P 5 HOH B 55 413 150 HOH HOH . P 5 HOH B 56 414 151 HOH HOH . P 5 HOH B 57 415 152 HOH HOH . P 5 HOH B 58 416 153 HOH HOH . P 5 HOH B 59 417 154 HOH HOH . P 5 HOH B 60 418 155 HOH HOH . P 5 HOH B 61 419 156 HOH HOH . P 5 HOH B 62 420 157 HOH HOH . P 5 HOH B 63 421 174 HOH HOH . Q 5 HOH C 1 1 1 HOH HOH . Q 5 HOH C 2 2 2 HOH HOH . Q 5 HOH C 3 358 3 HOH HOH . Q 5 HOH C 4 359 14 HOH HOH . Q 5 HOH C 5 360 19 HOH HOH . Q 5 HOH C 6 361 20 HOH HOH . Q 5 HOH C 7 362 22 HOH HOH . Q 5 HOH C 8 363 38 HOH HOH . Q 5 HOH C 9 364 41 HOH HOH . Q 5 HOH C 10 365 53 HOH HOH . Q 5 HOH C 11 366 54 HOH HOH . Q 5 HOH C 12 367 73 HOH HOH . Q 5 HOH C 13 368 79 HOH HOH . Q 5 HOH C 14 369 86 HOH HOH . Q 5 HOH C 15 370 91 HOH HOH . Q 5 HOH C 16 371 99 HOH HOH . Q 5 HOH C 17 372 108 HOH HOH . Q 5 HOH C 18 373 111 HOH HOH . Q 5 HOH C 19 374 120 HOH HOH . Q 5 HOH C 20 375 128 HOH HOH . Q 5 HOH C 21 376 129 HOH HOH . Q 5 HOH C 22 377 158 HOH HOH . Q 5 HOH C 23 378 159 HOH HOH . Q 5 HOH C 24 379 160 HOH HOH . Q 5 HOH C 25 380 161 HOH HOH . Q 5 HOH C 26 381 162 HOH HOH . Q 5 HOH C 27 382 163 HOH HOH . Q 5 HOH C 28 383 164 HOH HOH . Q 5 HOH C 29 384 165 HOH HOH . Q 5 HOH C 30 385 166 HOH HOH . Q 5 HOH C 31 386 167 HOH HOH . Q 5 HOH C 32 387 168 HOH HOH . Q 5 HOH C 33 388 169 HOH HOH . Q 5 HOH C 34 389 170 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol X _atom_site.label_atom_id UNK _atom_site.label_comp_id UNX _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 4 _atom_site.Cartn_x -27.772 _atom_site.Cartn_y -28.631 _atom_site.Cartn_z 10.806 _atom_site.occupancy 0.01 _atom_site.B_iso_or_equiv 24.75 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id UNK _atom_site.auth_comp_id UNX _atom_site.auth_seq_id 358 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 382 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #