data_3GBR # _model_server_result.job_id WO1PgFAJX_zg_FhivRL5Zg _model_server_result.datetime_utc '2025-08-31 07:57:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gbr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":503}' # _entry.id 3GBR # _exptl.entry_id 3GBR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.81 _cell.angle_gamma 90 _cell.entry_id 3GBR _cell.length_a 61.945 _cell.length_b 65.993 _cell.length_c 84.262 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GBR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 91 A SER 91 1_555 E MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc2 A OD1 ASP 223 A ASP 223 1_555 D MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc3 A OE1 GLU 224 A GLU 224 1_555 D MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc4 A OE1 GLU 224 A GLU 224 1_555 E MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc5 C O2A PRP . A PRP 401 1_555 E MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc6 C O1B PRP . A PRP 401 1_555 E MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? metalc ? metalc7 M O HOH . A HOH 443 1_555 D MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc8 M O HOH . A HOH 444 1_555 E MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc9 B OG SER 91 B SER 91 1_555 G MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc10 B OD1 ASP 223 B ASP 223 1_555 H MN MN . B MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc11 B OE1 GLU 224 B GLU 224 1_555 G MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc12 N O HOH . B HOH 374 1_555 H MN MN . B MN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? metalc ? metalc13 F O2A PRP . B PRP 402 1_555 G MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc14 F O1B PRP . B PRP 402 1_555 G MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc15 N O HOH . B HOH 481 1_555 G MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc16 N O HOH . B HOH 484 1_555 G MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3GBR _atom_sites.fract_transf_matrix[1][1] 0.016143 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002502 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015153 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012009 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PRP A 1 401 401 PRP PRP . D 3 MN A 1 501 501 MN MN . E 3 MN A 1 502 502 MN MN . F 2 PRP B 1 402 402 PRP PRP . G 3 MN B 1 503 503 MN MN . H 3 MN B 1 504 504 MN MN . I 4 PEG B 1 346 1 PEG PEG . J 4 PEG B 1 347 2 PEG PEG . K 5 GOL B 1 348 3 GOL GOL . L 5 GOL B 1 349 4 GOL GOL . M 6 HOH A 1 346 1 HOH HOH . M 6 HOH A 2 347 2 HOH HOH . M 6 HOH A 3 348 4 HOH HOH . M 6 HOH A 4 349 5 HOH HOH . M 6 HOH A 5 350 6 HOH HOH . M 6 HOH A 6 351 9 HOH HOH . M 6 HOH A 7 352 13 HOH HOH . M 6 HOH A 8 353 16 HOH HOH . M 6 HOH A 9 354 25 HOH HOH . M 6 HOH A 10 355 31 HOH HOH . M 6 HOH A 11 356 35 HOH HOH . M 6 HOH A 12 357 36 HOH HOH . M 6 HOH A 13 358 37 HOH HOH . M 6 HOH A 14 359 38 HOH HOH . M 6 HOH A 15 360 43 HOH HOH . M 6 HOH A 16 361 45 HOH HOH . M 6 HOH A 17 362 46 HOH HOH . M 6 HOH A 18 363 49 HOH HOH . M 6 HOH A 19 364 51 HOH HOH . M 6 HOH A 20 365 54 HOH HOH . M 6 HOH A 21 366 57 HOH HOH . M 6 HOH A 22 367 60 HOH HOH . M 6 HOH A 23 368 61 HOH HOH . M 6 HOH A 24 369 63 HOH HOH . M 6 HOH A 25 370 64 HOH HOH . M 6 HOH A 26 371 67 HOH HOH . M 6 HOH A 27 372 68 HOH HOH . M 6 HOH A 28 373 70 HOH HOH . M 6 HOH A 29 374 71 HOH HOH . M 6 HOH A 30 375 72 HOH HOH . M 6 HOH A 31 376 73 HOH HOH . M 6 HOH A 32 377 76 HOH HOH . M 6 HOH A 33 378 77 HOH HOH . M 6 HOH A 34 379 79 HOH HOH . M 6 HOH A 35 380 84 HOH HOH . M 6 HOH A 36 381 87 HOH HOH . M 6 HOH A 37 382 88 HOH HOH . M 6 HOH A 38 383 89 HOH HOH . M 6 HOH A 39 384 91 HOH HOH . M 6 HOH A 40 385 95 HOH HOH . M 6 HOH A 41 386 99 HOH HOH . M 6 HOH A 42 387 103 HOH HOH . M 6 HOH A 43 388 106 HOH HOH . M 6 HOH A 44 389 107 HOH HOH . M 6 HOH A 45 390 110 HOH HOH . M 6 HOH A 46 391 111 HOH HOH . M 6 HOH A 47 392 112 HOH HOH . M 6 HOH A 48 393 115 HOH HOH . M 6 HOH A 49 394 117 HOH HOH . M 6 HOH A 50 395 119 HOH HOH . M 6 HOH A 51 396 121 HOH HOH . M 6 HOH A 52 397 122 HOH HOH . M 6 HOH A 53 398 123 HOH HOH . M 6 HOH A 54 399 129 HOH HOH . M 6 HOH A 55 400 130 HOH HOH . M 6 HOH A 56 402 131 HOH HOH . M 6 HOH A 57 403 134 HOH HOH . M 6 HOH A 58 404 135 HOH HOH . M 6 HOH A 59 405 136 HOH HOH . M 6 HOH A 60 406 137 HOH HOH . M 6 HOH A 61 407 138 HOH HOH . M 6 HOH A 62 408 139 HOH HOH . M 6 HOH A 63 409 141 HOH HOH . M 6 HOH A 64 410 142 HOH HOH . M 6 HOH A 65 411 145 HOH HOH . M 6 HOH A 66 412 146 HOH HOH . M 6 HOH A 67 413 147 HOH HOH . M 6 HOH A 68 414 151 HOH HOH . M 6 HOH A 69 415 152 HOH HOH . M 6 HOH A 70 416 154 HOH HOH . M 6 HOH A 71 417 155 HOH HOH . M 6 HOH A 72 418 157 HOH HOH . M 6 HOH A 73 419 158 HOH HOH . M 6 HOH A 74 420 163 HOH HOH . M 6 HOH A 75 421 165 HOH HOH . M 6 HOH A 76 422 176 HOH HOH . M 6 HOH A 77 423 179 HOH HOH . M 6 HOH A 78 424 180 HOH HOH . M 6 HOH A 79 425 181 HOH HOH . M 6 HOH A 80 426 185 HOH HOH . M 6 HOH A 81 427 186 HOH HOH . M 6 HOH A 82 428 188 HOH HOH . M 6 HOH A 83 429 189 HOH HOH . M 6 HOH A 84 430 195 HOH HOH . M 6 HOH A 85 431 196 HOH HOH . M 6 HOH A 86 432 198 HOH HOH . M 6 HOH A 87 433 200 HOH HOH . M 6 HOH A 88 434 201 HOH HOH . M 6 HOH A 89 435 208 HOH HOH . M 6 HOH A 90 436 209 HOH HOH . M 6 HOH A 91 437 213 HOH HOH . M 6 HOH A 92 438 218 HOH HOH . M 6 HOH A 93 439 219 HOH HOH . M 6 HOH A 94 440 223 HOH HOH . M 6 HOH A 95 441 224 HOH HOH . M 6 HOH A 96 442 226 HOH HOH . M 6 HOH A 97 443 227 HOH HOH . M 6 HOH A 98 444 228 HOH HOH . M 6 HOH A 99 445 236 HOH HOH . M 6 HOH A 100 446 237 HOH HOH . M 6 HOH A 101 447 239 HOH HOH . M 6 HOH A 102 448 240 HOH HOH . M 6 HOH A 103 449 243 HOH HOH . N 6 HOH B 1 350 3 HOH HOH . N 6 HOH B 2 351 7 HOH HOH . N 6 HOH B 3 352 8 HOH HOH . N 6 HOH B 4 353 10 HOH HOH . N 6 HOH B 5 354 11 HOH HOH . N 6 HOH B 6 355 12 HOH HOH . N 6 HOH B 7 356 14 HOH HOH . N 6 HOH B 8 357 15 HOH HOH . N 6 HOH B 9 358 17 HOH HOH . N 6 HOH B 10 359 18 HOH HOH . N 6 HOH B 11 360 19 HOH HOH . N 6 HOH B 12 361 20 HOH HOH . N 6 HOH B 13 362 21 HOH HOH . N 6 HOH B 14 363 22 HOH HOH . N 6 HOH B 15 364 23 HOH HOH . N 6 HOH B 16 365 24 HOH HOH . N 6 HOH B 17 366 26 HOH HOH . N 6 HOH B 18 367 27 HOH HOH . N 6 HOH B 19 368 28 HOH HOH . N 6 HOH B 20 369 29 HOH HOH . N 6 HOH B 21 370 30 HOH HOH . N 6 HOH B 22 371 32 HOH HOH . N 6 HOH B 23 372 33 HOH HOH . N 6 HOH B 24 373 34 HOH HOH . N 6 HOH B 25 374 39 HOH HOH . N 6 HOH B 26 375 40 HOH HOH . N 6 HOH B 27 376 41 HOH HOH . N 6 HOH B 28 377 42 HOH HOH . N 6 HOH B 29 378 44 HOH HOH . N 6 HOH B 30 379 47 HOH HOH . N 6 HOH B 31 380 48 HOH HOH . N 6 HOH B 32 381 50 HOH HOH . N 6 HOH B 33 382 52 HOH HOH . N 6 HOH B 34 383 53 HOH HOH . N 6 HOH B 35 384 55 HOH HOH . N 6 HOH B 36 385 56 HOH HOH . N 6 HOH B 37 386 58 HOH HOH . N 6 HOH B 38 387 59 HOH HOH . N 6 HOH B 39 388 62 HOH HOH . N 6 HOH B 40 389 65 HOH HOH . N 6 HOH B 41 390 66 HOH HOH . N 6 HOH B 42 391 69 HOH HOH . N 6 HOH B 43 392 74 HOH HOH . N 6 HOH B 44 393 75 HOH HOH . N 6 HOH B 45 394 78 HOH HOH . N 6 HOH B 46 395 80 HOH HOH . N 6 HOH B 47 396 81 HOH HOH . N 6 HOH B 48 397 82 HOH HOH . N 6 HOH B 49 398 83 HOH HOH . N 6 HOH B 50 399 85 HOH HOH . N 6 HOH B 51 400 86 HOH HOH . N 6 HOH B 52 401 90 HOH HOH . N 6 HOH B 53 403 92 HOH HOH . N 6 HOH B 54 404 93 HOH HOH . N 6 HOH B 55 405 94 HOH HOH . N 6 HOH B 56 406 96 HOH HOH . N 6 HOH B 57 407 97 HOH HOH . N 6 HOH B 58 408 98 HOH HOH . N 6 HOH B 59 409 100 HOH HOH . N 6 HOH B 60 410 101 HOH HOH . N 6 HOH B 61 411 102 HOH HOH . N 6 HOH B 62 412 104 HOH HOH . N 6 HOH B 63 413 105 HOH HOH . N 6 HOH B 64 414 108 HOH HOH . N 6 HOH B 65 415 109 HOH HOH . N 6 HOH B 66 416 113 HOH HOH . N 6 HOH B 67 417 114 HOH HOH . N 6 HOH B 68 418 116 HOH HOH . N 6 HOH B 69 419 118 HOH HOH . N 6 HOH B 70 420 120 HOH HOH . N 6 HOH B 71 421 124 HOH HOH . N 6 HOH B 72 422 125 HOH HOH . N 6 HOH B 73 423 126 HOH HOH . N 6 HOH B 74 424 127 HOH HOH . N 6 HOH B 75 425 128 HOH HOH . N 6 HOH B 76 426 132 HOH HOH . N 6 HOH B 77 427 133 HOH HOH . N 6 HOH B 78 428 140 HOH HOH . N 6 HOH B 79 429 143 HOH HOH . N 6 HOH B 80 430 144 HOH HOH . N 6 HOH B 81 431 148 HOH HOH . N 6 HOH B 82 432 149 HOH HOH . N 6 HOH B 83 433 150 HOH HOH . N 6 HOH B 84 434 153 HOH HOH . N 6 HOH B 85 435 156 HOH HOH . N 6 HOH B 86 436 159 HOH HOH . N 6 HOH B 87 437 160 HOH HOH . N 6 HOH B 88 438 161 HOH HOH . N 6 HOH B 89 439 162 HOH HOH . N 6 HOH B 90 440 164 HOH HOH . N 6 HOH B 91 441 166 HOH HOH . N 6 HOH B 92 442 167 HOH HOH . N 6 HOH B 93 443 168 HOH HOH . N 6 HOH B 94 444 169 HOH HOH . N 6 HOH B 95 445 170 HOH HOH . N 6 HOH B 96 446 171 HOH HOH . N 6 HOH B 97 447 172 HOH HOH . N 6 HOH B 98 448 173 HOH HOH . N 6 HOH B 99 449 174 HOH HOH . N 6 HOH B 100 450 175 HOH HOH . N 6 HOH B 101 451 177 HOH HOH . N 6 HOH B 102 452 178 HOH HOH . N 6 HOH B 103 453 182 HOH HOH . N 6 HOH B 104 454 183 HOH HOH . N 6 HOH B 105 455 184 HOH HOH . N 6 HOH B 106 456 187 HOH HOH . N 6 HOH B 107 457 190 HOH HOH . N 6 HOH B 108 458 191 HOH HOH . N 6 HOH B 109 459 192 HOH HOH . N 6 HOH B 110 460 193 HOH HOH . N 6 HOH B 111 461 194 HOH HOH . N 6 HOH B 112 462 197 HOH HOH . N 6 HOH B 113 463 199 HOH HOH . N 6 HOH B 114 464 202 HOH HOH . N 6 HOH B 115 465 203 HOH HOH . N 6 HOH B 116 466 204 HOH HOH . N 6 HOH B 117 467 205 HOH HOH . N 6 HOH B 118 468 206 HOH HOH . N 6 HOH B 119 469 207 HOH HOH . N 6 HOH B 120 470 210 HOH HOH . N 6 HOH B 121 471 211 HOH HOH . N 6 HOH B 122 472 212 HOH HOH . N 6 HOH B 123 473 214 HOH HOH . N 6 HOH B 124 474 215 HOH HOH . N 6 HOH B 125 475 216 HOH HOH . N 6 HOH B 126 476 217 HOH HOH . N 6 HOH B 127 477 220 HOH HOH . N 6 HOH B 128 478 221 HOH HOH . N 6 HOH B 129 479 222 HOH HOH . N 6 HOH B 130 480 225 HOH HOH . N 6 HOH B 131 481 229 HOH HOH . N 6 HOH B 132 482 230 HOH HOH . N 6 HOH B 133 483 231 HOH HOH . N 6 HOH B 134 484 232 HOH HOH . N 6 HOH B 135 485 233 HOH HOH . N 6 HOH B 136 486 234 HOH HOH . N 6 HOH B 137 487 235 HOH HOH . N 6 HOH B 138 488 238 HOH HOH . N 6 HOH B 139 489 241 HOH HOH . N 6 HOH B 140 490 242 HOH HOH . N 6 HOH B 141 491 244 HOH HOH . N 6 HOH B 142 492 245 HOH HOH . N 6 HOH B 143 493 246 HOH HOH . N 6 HOH B 144 494 247 HOH HOH . N 6 HOH B 145 495 248 HOH HOH . N 6 HOH B 146 496 249 HOH HOH . N 6 HOH B 147 497 250 HOH HOH . N 6 HOH B 148 498 251 HOH HOH . N 6 HOH B 149 499 252 HOH HOH . N 6 HOH B 150 500 253 HOH HOH . N 6 HOH B 151 501 254 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x 0.398 _atom_site.Cartn_y -42.073 _atom_site.Cartn_z 38.443 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.25 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 503 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 106 _model_server_stats.parse_time_ms 197 _model_server_stats.create_model_time_ms 400 _model_server_stats.query_time_ms 799 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #