data_3GC0 # _model_server_result.job_id OTtVrBbwILKW-80bVRQ-fg _model_server_result.datetime_utc '2025-03-25 14:30:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gc0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":309}' # _entry.id 3GC0 # _exptl.entry_id 3GC0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GC0 _cell.length_a 53.24 _cell.length_b 73.18 _cell.length_c 75.38 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GC0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 3GC0 _atom_sites.fract_transf_matrix[1][1] 0.018783 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013665 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 309 1 AMP AMP . C 3 HOH A 1 310 1 HOH HOH . C 3 HOH A 2 311 2 HOH HOH . C 3 HOH A 3 312 4 HOH HOH . C 3 HOH A 4 313 5 HOH HOH . C 3 HOH A 5 314 6 HOH HOH . C 3 HOH A 6 315 7 HOH HOH . C 3 HOH A 7 316 8 HOH HOH . C 3 HOH A 8 317 9 HOH HOH . C 3 HOH A 9 318 10 HOH HOH . C 3 HOH A 10 319 11 HOH HOH . C 3 HOH A 11 320 12 HOH HOH . C 3 HOH A 12 321 13 HOH HOH . C 3 HOH A 13 322 14 HOH HOH . C 3 HOH A 14 323 15 HOH HOH . C 3 HOH A 15 324 16 HOH HOH . C 3 HOH A 16 325 17 HOH HOH . C 3 HOH A 17 326 18 HOH HOH . C 3 HOH A 18 327 19 HOH HOH . C 3 HOH A 19 328 20 HOH HOH . C 3 HOH A 20 329 21 HOH HOH . C 3 HOH A 21 330 22 HOH HOH . C 3 HOH A 22 331 23 HOH HOH . C 3 HOH A 23 332 24 HOH HOH . C 3 HOH A 24 333 25 HOH HOH . C 3 HOH A 25 334 26 HOH HOH . C 3 HOH A 26 335 27 HOH HOH . C 3 HOH A 27 336 28 HOH HOH . C 3 HOH A 28 337 29 HOH HOH . C 3 HOH A 29 338 30 HOH HOH . C 3 HOH A 30 339 31 HOH HOH . C 3 HOH A 31 340 33 HOH HOH . C 3 HOH A 32 341 34 HOH HOH . C 3 HOH A 33 342 35 HOH HOH . C 3 HOH A 34 343 36 HOH HOH . C 3 HOH A 35 344 37 HOH HOH . C 3 HOH A 36 345 38 HOH HOH . C 3 HOH A 37 346 39 HOH HOH . C 3 HOH A 38 347 40 HOH HOH . C 3 HOH A 39 348 41 HOH HOH . C 3 HOH A 40 349 42 HOH HOH . C 3 HOH A 41 350 43 HOH HOH . C 3 HOH A 42 351 44 HOH HOH . C 3 HOH A 43 352 45 HOH HOH . C 3 HOH A 44 353 46 HOH HOH . C 3 HOH A 45 354 47 HOH HOH . C 3 HOH A 46 355 48 HOH HOH . C 3 HOH A 47 356 49 HOH HOH . C 3 HOH A 48 357 50 HOH HOH . C 3 HOH A 49 358 51 HOH HOH . C 3 HOH A 50 359 52 HOH HOH . C 3 HOH A 51 360 53 HOH HOH . C 3 HOH A 52 361 54 HOH HOH . C 3 HOH A 53 362 55 HOH HOH . C 3 HOH A 54 363 56 HOH HOH . C 3 HOH A 55 364 57 HOH HOH . C 3 HOH A 56 365 58 HOH HOH . C 3 HOH A 57 366 59 HOH HOH . C 3 HOH A 58 367 60 HOH HOH . C 3 HOH A 59 368 61 HOH HOH . C 3 HOH A 60 369 62 HOH HOH . C 3 HOH A 61 370 63 HOH HOH . C 3 HOH A 62 371 64 HOH HOH . C 3 HOH A 63 372 65 HOH HOH . C 3 HOH A 64 373 66 HOH HOH . C 3 HOH A 65 374 68 HOH HOH . C 3 HOH A 66 375 70 HOH HOH . C 3 HOH A 67 376 72 HOH HOH . C 3 HOH A 68 377 73 HOH HOH . C 3 HOH A 69 378 74 HOH HOH . C 3 HOH A 70 379 75 HOH HOH . C 3 HOH A 71 380 77 HOH HOH . C 3 HOH A 72 381 78 HOH HOH . C 3 HOH A 73 382 81 HOH HOH . C 3 HOH A 74 383 83 HOH HOH . C 3 HOH A 75 384 84 HOH HOH . C 3 HOH A 76 385 85 HOH HOH . C 3 HOH A 77 386 86 HOH HOH . C 3 HOH A 78 387 87 HOH HOH . C 3 HOH A 79 388 88 HOH HOH . C 3 HOH A 80 389 89 HOH HOH . C 3 HOH A 81 390 90 HOH HOH . C 3 HOH A 82 391 91 HOH HOH . C 3 HOH A 83 392 92 HOH HOH . C 3 HOH A 84 393 93 HOH HOH . C 3 HOH A 85 394 94 HOH HOH . C 3 HOH A 86 395 95 HOH HOH . C 3 HOH A 87 396 97 HOH HOH . C 3 HOH A 88 397 98 HOH HOH . C 3 HOH A 89 398 99 HOH HOH . C 3 HOH A 90 399 101 HOH HOH . C 3 HOH A 91 400 103 HOH HOH . C 3 HOH A 92 401 104 HOH HOH . C 3 HOH A 93 402 106 HOH HOH . C 3 HOH A 94 403 109 HOH HOH . C 3 HOH A 95 404 110 HOH HOH . C 3 HOH A 96 405 111 HOH HOH . C 3 HOH A 97 406 112 HOH HOH . C 3 HOH A 98 407 113 HOH HOH . C 3 HOH A 99 408 114 HOH HOH . C 3 HOH A 100 409 117 HOH HOH . C 3 HOH A 101 410 119 HOH HOH . C 3 HOH A 102 411 121 HOH HOH . C 3 HOH A 103 412 122 HOH HOH . C 3 HOH A 104 413 123 HOH HOH . C 3 HOH A 105 414 124 HOH HOH . C 3 HOH A 106 415 125 HOH HOH . C 3 HOH A 107 416 126 HOH HOH . C 3 HOH A 108 417 129 HOH HOH . C 3 HOH A 109 418 130 HOH HOH . C 3 HOH A 110 419 133 HOH HOH . C 3 HOH A 111 420 136 HOH HOH . C 3 HOH A 112 421 137 HOH HOH . C 3 HOH A 113 422 138 HOH HOH . C 3 HOH A 114 423 139 HOH HOH . C 3 HOH A 115 424 140 HOH HOH . C 3 HOH A 116 425 141 HOH HOH . C 3 HOH A 117 426 143 HOH HOH . C 3 HOH A 118 427 144 HOH HOH . C 3 HOH A 119 428 145 HOH HOH . C 3 HOH A 120 429 146 HOH HOH . C 3 HOH A 121 430 147 HOH HOH . C 3 HOH A 122 431 148 HOH HOH . C 3 HOH A 123 432 149 HOH HOH . C 3 HOH A 124 433 150 HOH HOH . C 3 HOH A 125 434 151 HOH HOH . C 3 HOH A 126 435 152 HOH HOH . C 3 HOH A 127 436 153 HOH HOH . C 3 HOH A 128 437 154 HOH HOH . C 3 HOH A 129 438 155 HOH HOH . C 3 HOH A 130 439 156 HOH HOH . C 3 HOH A 131 440 157 HOH HOH . C 3 HOH A 132 441 158 HOH HOH . C 3 HOH A 133 442 159 HOH HOH . C 3 HOH A 134 443 161 HOH HOH . C 3 HOH A 135 444 162 HOH HOH . C 3 HOH A 136 445 163 HOH HOH . C 3 HOH A 137 446 165 HOH HOH . C 3 HOH A 138 447 166 HOH HOH . C 3 HOH A 139 448 168 HOH HOH . C 3 HOH A 140 449 169 HOH HOH . C 3 HOH A 141 450 171 HOH HOH . C 3 HOH A 142 451 172 HOH HOH . C 3 HOH A 143 452 173 HOH HOH . C 3 HOH A 144 453 176 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . B 2 -0.974 5.028 -3.309 1 52.94 ? P AMP 309 A 1 HETATM 2 O O1P AMP . . . B 2 -1.147 3.553 -3.583 1 49.27 ? O1P AMP 309 A 1 HETATM 3 O O2P AMP . . . B 2 -1.815 6 -4.094 1 51.83 ? O2P AMP 309 A 1 HETATM 4 O O3P AMP . . . B 2 -0.966 5.355 -1.82 1 53.69 ? O3P AMP 309 A 1 HETATM 5 O O5' AMP . . . B 2 0.484 5.381 -3.89 1 46.73 ? O5' AMP 309 A 1 HETATM 6 C C5' AMP . . . B 2 1.602 5.689 -3.071 1 41.86 ? C5' AMP 309 A 1 HETATM 7 C C4' AMP . . . B 2 2.507 6.657 -3.827 1 39.8 ? C4' AMP 309 A 1 HETATM 8 O O4' AMP . . . B 2 2.912 6.141 -5.106 1 35 ? O4' AMP 309 A 1 HETATM 9 C C3' AMP . . . B 2 1.806 7.963 -4.143 1 38.14 ? C3' AMP 309 A 1 HETATM 10 O O3' AMP . . . B 2 2.781 9.002 -4.112 1 36.91 ? O3' AMP 309 A 1 HETATM 11 C C2' AMP . . . B 2 1.32 7.847 -5.572 1 37.7 ? C2' AMP 309 A 1 HETATM 12 O O2' AMP . . . B 2 1.374 9.127 -6.229 1 39.64 ? O2' AMP 309 A 1 HETATM 13 C C1' AMP . . . B 2 2.378 6.932 -6.17 1 35.86 ? C1' AMP 309 A 1 HETATM 14 N N9 AMP . . . B 2 1.957 5.954 -7.219 1 33.5 ? N9 AMP 309 A 1 HETATM 15 C C8 AMP . . . B 2 1.143 4.868 -7.092 1 30.06 ? C8 AMP 309 A 1 HETATM 16 N N7 AMP . . . B 2 1.069 4.195 -8.272 1 28.37 ? N7 AMP 309 A 1 HETATM 17 C C5 AMP . . . B 2 1.854 4.858 -9.161 1 28.32 ? C5 AMP 309 A 1 HETATM 18 C C6 AMP . . . B 2 2.226 4.719 -10.585 1 27.8 ? C6 AMP 309 A 1 HETATM 19 N N6 AMP . . . B 2 1.76 3.689 -11.325 1 27.06 ? N6 AMP 309 A 1 HETATM 20 N N1 AMP . . . B 2 3.052 5.64 -11.13 1 29.06 ? N1 AMP 309 A 1 HETATM 21 C C2 AMP . . . B 2 3.518 6.675 -10.41 1 32.68 ? C2 AMP 309 A 1 HETATM 22 N N3 AMP . . . B 2 3.221 6.884 -9.113 1 31.04 ? N3 AMP 309 A 1 HETATM 23 C C4 AMP . . . B 2 2.422 6.014 -8.46 1 31.06 ? C4 AMP 309 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #