data_3GC8 # _model_server_result.job_id qY1-zZ_qTH_A4Jz5NK-MYQ _model_server_result.datetime_utc '2024-11-24 13:38:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gc8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":602}' # _entry.id 3GC8 # _exptl.entry_id 3GC8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.57 _cell.angle_gamma 90 _cell.entry_id 3GC8 _cell.length_a 39.124 _cell.length_b 157.71 _cell.length_c 60.36 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GC8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 87 A GLU 81 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.094 ? metalc ? metalc2 A NE2 HIS 205 A HIS 199 1_555 E NI NI . B NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc3 A OD2 ASP 322 A ASP 316 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc4 A OD1 ASP 322 A ASP 316 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.188 ? metalc ? metalc5 B OE2 GLU 251 B GLU 245 1_555 E NI NI . B NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? metalc ? metalc6 B OD2 ASP 298 B ASP 292 1_555 E NI NI . B NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc7 B OD1 ASP 300 B ASP 294 1_555 E NI NI . B NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc8 B OD2 ASP 322 B ASP 316 1_555 F NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc9 B OD1 ASP 322 B ASP 316 1_555 F NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.174 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3GC8 _atom_sites.fract_transf_matrix[1][1] 0.02556 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000702 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006341 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016574 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 601 601 NA NA . D 3 B45 A 1 365 1 B45 821 . E 4 NI B 1 602 602 NI NI . F 2 NA B 1 603 603 NA NA . G 3 B45 B 1 365 2 B45 821 . H 5 HOH A 1 366 1 HOH HOH . H 5 HOH A 2 367 113 HOH HOH . H 5 HOH A 3 368 3 HOH HOH . H 5 HOH A 4 369 5 HOH HOH . H 5 HOH A 5 371 7 HOH HOH . H 5 HOH A 6 373 9 HOH HOH . H 5 HOH A 7 381 17 HOH HOH . H 5 HOH A 8 382 18 HOH HOH . H 5 HOH A 9 383 19 HOH HOH . H 5 HOH A 10 384 20 HOH HOH . H 5 HOH A 11 386 22 HOH HOH . H 5 HOH A 12 387 23 HOH HOH . H 5 HOH A 13 390 26 HOH HOH . H 5 HOH A 14 393 29 HOH HOH . H 5 HOH A 15 396 32 HOH HOH . H 5 HOH A 16 397 33 HOH HOH . H 5 HOH A 17 399 35 HOH HOH . H 5 HOH A 18 403 39 HOH HOH . H 5 HOH A 19 405 41 HOH HOH . H 5 HOH A 20 406 42 HOH HOH . H 5 HOH A 21 409 45 HOH HOH . H 5 HOH A 22 411 47 HOH HOH . H 5 HOH A 23 413 49 HOH HOH . H 5 HOH A 24 415 51 HOH HOH . H 5 HOH A 25 416 52 HOH HOH . H 5 HOH A 26 417 53 HOH HOH . H 5 HOH A 27 418 54 HOH HOH . H 5 HOH A 28 420 56 HOH HOH . H 5 HOH A 29 425 63 HOH HOH . H 5 HOH A 30 426 64 HOH HOH . H 5 HOH A 31 427 65 HOH HOH . H 5 HOH A 32 428 66 HOH HOH . H 5 HOH A 33 429 67 HOH HOH . H 5 HOH A 34 431 69 HOH HOH . H 5 HOH A 35 433 71 HOH HOH . H 5 HOH A 36 434 72 HOH HOH . H 5 HOH A 37 436 74 HOH HOH . H 5 HOH A 38 437 75 HOH HOH . H 5 HOH A 39 438 76 HOH HOH . H 5 HOH A 40 439 77 HOH HOH . H 5 HOH A 41 444 82 HOH HOH . H 5 HOH A 42 450 88 HOH HOH . H 5 HOH A 43 451 89 HOH HOH . H 5 HOH A 44 454 92 HOH HOH . H 5 HOH A 45 456 94 HOH HOH . H 5 HOH A 46 457 95 HOH HOH . H 5 HOH A 47 463 101 HOH HOH . H 5 HOH A 48 464 102 HOH HOH . H 5 HOH A 49 465 103 HOH HOH . H 5 HOH A 50 470 108 HOH HOH . H 5 HOH A 51 471 109 HOH HOH . H 5 HOH A 52 473 111 HOH HOH . H 5 HOH A 53 474 112 HOH HOH . H 5 HOH A 54 476 115 HOH HOH . H 5 HOH A 55 477 116 HOH HOH . H 5 HOH A 56 479 118 HOH HOH . H 5 HOH A 57 481 120 HOH HOH . H 5 HOH A 58 484 123 HOH HOH . H 5 HOH A 59 488 127 HOH HOH . H 5 HOH A 60 492 132 HOH HOH . H 5 HOH A 61 494 134 HOH HOH . H 5 HOH A 62 496 136 HOH HOH . H 5 HOH A 63 497 137 HOH HOH . H 5 HOH A 64 499 139 HOH HOH . H 5 HOH A 65 502 142 HOH HOH . H 5 HOH A 66 503 143 HOH HOH . H 5 HOH A 67 506 146 HOH HOH . H 5 HOH A 68 507 147 HOH HOH . H 5 HOH A 69 510 150 HOH HOH . H 5 HOH A 70 512 152 HOH HOH . H 5 HOH A 71 517 157 HOH HOH . H 5 HOH A 72 519 159 HOH HOH . H 5 HOH A 73 522 162 HOH HOH . H 5 HOH A 74 523 163 HOH HOH . H 5 HOH A 75 525 165 HOH HOH . H 5 HOH A 76 526 167 HOH HOH . H 5 HOH A 77 528 169 HOH HOH . H 5 HOH A 78 529 170 HOH HOH . H 5 HOH A 79 532 173 HOH HOH . H 5 HOH A 80 535 177 HOH HOH . H 5 HOH A 81 536 178 HOH HOH . H 5 HOH A 82 537 179 HOH HOH . H 5 HOH A 83 543 188 HOH HOH . H 5 HOH A 84 544 189 HOH HOH . H 5 HOH A 85 547 192 HOH HOH . H 5 HOH A 86 549 194 HOH HOH . H 5 HOH A 87 551 196 HOH HOH . H 5 HOH A 88 553 200 HOH HOH . H 5 HOH A 89 555 203 HOH HOH . H 5 HOH A 90 556 204 HOH HOH . H 5 HOH A 91 557 205 HOH HOH . I 5 HOH B 1 366 2 HOH HOH . I 5 HOH B 2 368 4 HOH HOH . I 5 HOH B 3 370 6 HOH HOH . I 5 HOH B 4 372 8 HOH HOH . I 5 HOH B 5 374 10 HOH HOH . I 5 HOH B 6 375 11 HOH HOH . I 5 HOH B 7 376 12 HOH HOH . I 5 HOH B 8 377 13 HOH HOH . I 5 HOH B 9 378 14 HOH HOH . I 5 HOH B 10 379 15 HOH HOH . I 5 HOH B 11 380 16 HOH HOH . I 5 HOH B 12 385 21 HOH HOH . I 5 HOH B 13 388 24 HOH HOH . I 5 HOH B 14 389 25 HOH HOH . I 5 HOH B 15 391 27 HOH HOH . I 5 HOH B 16 392 28 HOH HOH . I 5 HOH B 17 394 30 HOH HOH . I 5 HOH B 18 395 31 HOH HOH . I 5 HOH B 19 398 34 HOH HOH . I 5 HOH B 20 400 36 HOH HOH . I 5 HOH B 21 401 37 HOH HOH . I 5 HOH B 22 402 38 HOH HOH . I 5 HOH B 23 404 40 HOH HOH . I 5 HOH B 24 407 43 HOH HOH . I 5 HOH B 25 408 44 HOH HOH . I 5 HOH B 26 410 46 HOH HOH . I 5 HOH B 27 412 48 HOH HOH . I 5 HOH B 28 414 50 HOH HOH . I 5 HOH B 29 419 55 HOH HOH . I 5 HOH B 30 421 57 HOH HOH . I 5 HOH B 31 422 60 HOH HOH . I 5 HOH B 32 423 61 HOH HOH . I 5 HOH B 33 424 62 HOH HOH . I 5 HOH B 34 430 68 HOH HOH . I 5 HOH B 35 432 70 HOH HOH . I 5 HOH B 36 435 73 HOH HOH . I 5 HOH B 37 440 78 HOH HOH . I 5 HOH B 38 441 79 HOH HOH . I 5 HOH B 39 442 80 HOH HOH . I 5 HOH B 40 443 81 HOH HOH . I 5 HOH B 41 445 83 HOH HOH . I 5 HOH B 42 446 84 HOH HOH . I 5 HOH B 43 447 85 HOH HOH . I 5 HOH B 44 448 86 HOH HOH . I 5 HOH B 45 449 87 HOH HOH . I 5 HOH B 46 452 90 HOH HOH . I 5 HOH B 47 453 91 HOH HOH . I 5 HOH B 48 455 93 HOH HOH . I 5 HOH B 49 458 96 HOH HOH . I 5 HOH B 50 459 97 HOH HOH . I 5 HOH B 51 460 98 HOH HOH . I 5 HOH B 52 461 99 HOH HOH . I 5 HOH B 53 462 100 HOH HOH . I 5 HOH B 54 466 104 HOH HOH . I 5 HOH B 55 467 105 HOH HOH . I 5 HOH B 56 468 106 HOH HOH . I 5 HOH B 57 469 107 HOH HOH . I 5 HOH B 58 472 110 HOH HOH . I 5 HOH B 59 475 114 HOH HOH . I 5 HOH B 60 478 117 HOH HOH . I 5 HOH B 61 480 119 HOH HOH . I 5 HOH B 62 482 121 HOH HOH . I 5 HOH B 63 483 122 HOH HOH . I 5 HOH B 64 485 124 HOH HOH . I 5 HOH B 65 486 125 HOH HOH . I 5 HOH B 66 487 126 HOH HOH . I 5 HOH B 67 489 129 HOH HOH . I 5 HOH B 68 490 130 HOH HOH . I 5 HOH B 69 491 131 HOH HOH . I 5 HOH B 70 493 133 HOH HOH . I 5 HOH B 71 495 135 HOH HOH . I 5 HOH B 72 498 138 HOH HOH . I 5 HOH B 73 500 140 HOH HOH . I 5 HOH B 74 501 141 HOH HOH . I 5 HOH B 75 504 144 HOH HOH . I 5 HOH B 76 505 145 HOH HOH . I 5 HOH B 77 508 148 HOH HOH . I 5 HOH B 78 509 149 HOH HOH . I 5 HOH B 79 511 151 HOH HOH . I 5 HOH B 80 513 153 HOH HOH . I 5 HOH B 81 514 154 HOH HOH . I 5 HOH B 82 515 155 HOH HOH . I 5 HOH B 83 516 156 HOH HOH . I 5 HOH B 84 518 158 HOH HOH . I 5 HOH B 85 520 160 HOH HOH . I 5 HOH B 86 521 161 HOH HOH . I 5 HOH B 87 524 164 HOH HOH . I 5 HOH B 88 527 168 HOH HOH . I 5 HOH B 89 530 171 HOH HOH . I 5 HOH B 90 531 172 HOH HOH . I 5 HOH B 91 533 174 HOH HOH . I 5 HOH B 92 534 175 HOH HOH . I 5 HOH B 93 538 180 HOH HOH . I 5 HOH B 94 539 181 HOH HOH . I 5 HOH B 95 540 182 HOH HOH . I 5 HOH B 96 541 183 HOH HOH . I 5 HOH B 97 542 186 HOH HOH . I 5 HOH B 98 545 190 HOH HOH . I 5 HOH B 99 546 191 HOH HOH . I 5 HOH B 100 548 193 HOH HOH . I 5 HOH B 101 550 195 HOH HOH . I 5 HOH B 102 552 199 HOH HOH . I 5 HOH B 103 554 202 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 14.555 _atom_site.Cartn_y 14.121 _atom_site.Cartn_z 12.521 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.93 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 602 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #