data_3GCP # _model_server_result.job_id gevEmD_bf0TVcRfAbKP1AA _model_server_result.datetime_utc '2024-11-22 02:02:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gcp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":361}' # _entry.id 3GCP # _exptl.entry_id 3GCP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 377.435 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[5-(4-FLUORO-PHENYL)-2-(4-METHANESULFINYL-PHENYL)-3H-IMIDAZOL-4-YL]-PYRIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GCP _cell.length_a 68.89 _cell.length_b 69.87 _cell.length_c 74.51 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GCP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H16 F N3 O S' _chem_comp.formula_weight 377.435 _chem_comp.id SB2 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[5-(4-FLUORO-PHENYL)-2-(4-METHANESULFINYL-PHENYL)-3H-IMIDAZOL-4-YL]-PYRIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 S1 SB2 doub 325 n n C1 S1 SB2 sing 326 n n C1 H11 SB2 sing 327 n n C1 H12 SB2 sing 328 n n C1 H13 SB2 sing 329 n n S1 CA3 SB2 sing 330 n n CA1 CA2 SB2 doub 331 n y CA1 CA6 SB2 sing 332 n y CA1 HA1 SB2 sing 333 n n CA2 CA3 SB2 sing 334 n y CA2 HA2 SB2 sing 335 n n CA3 CA4 SB2 doub 336 n y CA4 CA5 SB2 sing 337 n y CA4 HA4 SB2 sing 338 n n CA5 CA6 SB2 doub 339 n y CA5 HA5 SB2 sing 340 n n CA6 CC2 SB2 sing 341 n y NB1 CB2 SB2 doub 342 n y NB1 CB6 SB2 sing 343 n y CB2 CB3 SB2 sing 344 n y CB2 HB2 SB2 sing 345 n n CB3 CB4 SB2 doub 346 n y CB3 HB3 SB2 sing 347 n n CB4 CB5 SB2 sing 348 n y CB4 CC5 SB2 sing 349 n y CB5 CB6 SB2 doub 350 n y CB5 HB5 SB2 sing 351 n n CB6 HB6 SB2 sing 352 n n NC1 CC2 SB2 sing 353 n y NC1 CC5 SB2 sing 354 n y NC1 HN1 SB2 sing 355 n n CC2 NC3 SB2 doub 356 n y NC3 CC4 SB2 sing 357 n y CC4 CC5 SB2 doub 358 n y CC4 CD6 SB2 sing 359 n y CD1 CD2 SB2 doub 360 n y CD1 CD6 SB2 sing 361 n y CD1 HD1 SB2 sing 362 n n CD2 CD3 SB2 sing 363 n y CD2 HD2 SB2 sing 364 n n CD3 CD4 SB2 doub 365 n y CD3 FD3 SB2 sing 366 n n CD4 CD5 SB2 sing 367 n y CD4 HD4 SB2 sing 368 n n CD5 CD6 SB2 doub 369 n y CD5 HD5 SB2 sing 370 n n # _atom_sites.entry_id 3GCP _atom_sites.fract_transf_matrix[1][1] 0.014516 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014312 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013421 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SB2 A 1 361 1 SB2 SB2 . C 3 BOG A 1 362 1 BOG BOG . D 3 BOG A 1 363 1 BOG BOG . E 4 HOH A 1 364 1 HOH HOH . E 4 HOH A 2 365 2 HOH HOH . E 4 HOH A 3 366 3 HOH HOH . E 4 HOH A 4 367 5 HOH HOH . E 4 HOH A 5 368 6 HOH HOH . E 4 HOH A 6 369 7 HOH HOH . E 4 HOH A 7 370 8 HOH HOH . E 4 HOH A 8 371 9 HOH HOH . E 4 HOH A 9 372 10 HOH HOH . E 4 HOH A 10 373 11 HOH HOH . E 4 HOH A 11 374 12 HOH HOH . E 4 HOH A 12 375 13 HOH HOH . E 4 HOH A 13 376 14 HOH HOH . E 4 HOH A 14 377 15 HOH HOH . E 4 HOH A 15 378 16 HOH HOH . E 4 HOH A 16 379 17 HOH HOH . E 4 HOH A 17 380 18 HOH HOH . E 4 HOH A 18 381 19 HOH HOH . E 4 HOH A 19 382 21 HOH HOH . E 4 HOH A 20 383 22 HOH HOH . E 4 HOH A 21 384 23 HOH HOH . E 4 HOH A 22 385 24 HOH HOH . E 4 HOH A 23 386 25 HOH HOH . E 4 HOH A 24 387 26 HOH HOH . E 4 HOH A 25 388 27 HOH HOH . E 4 HOH A 26 389 28 HOH HOH . E 4 HOH A 27 390 30 HOH HOH . E 4 HOH A 28 391 31 HOH HOH . E 4 HOH A 29 392 32 HOH HOH . E 4 HOH A 30 393 33 HOH HOH . E 4 HOH A 31 394 34 HOH HOH . E 4 HOH A 32 395 35 HOH HOH . E 4 HOH A 33 396 36 HOH HOH . E 4 HOH A 34 397 37 HOH HOH . E 4 HOH A 35 398 38 HOH HOH . E 4 HOH A 36 399 39 HOH HOH . E 4 HOH A 37 400 40 HOH HOH . E 4 HOH A 38 401 41 HOH HOH . E 4 HOH A 39 402 44 HOH HOH . E 4 HOH A 40 403 45 HOH HOH . E 4 HOH A 41 404 46 HOH HOH . E 4 HOH A 42 405 47 HOH HOH . E 4 HOH A 43 406 48 HOH HOH . E 4 HOH A 44 407 49 HOH HOH . E 4 HOH A 45 408 50 HOH HOH . E 4 HOH A 46 409 51 HOH HOH . E 4 HOH A 47 410 53 HOH HOH . E 4 HOH A 48 411 54 HOH HOH . E 4 HOH A 49 412 55 HOH HOH . E 4 HOH A 50 413 56 HOH HOH . E 4 HOH A 51 414 57 HOH HOH . E 4 HOH A 52 415 58 HOH HOH . E 4 HOH A 53 416 59 HOH HOH . E 4 HOH A 54 417 60 HOH HOH . E 4 HOH A 55 418 62 HOH HOH . E 4 HOH A 56 419 63 HOH HOH . E 4 HOH A 57 420 64 HOH HOH . E 4 HOH A 58 421 65 HOH HOH . E 4 HOH A 59 422 66 HOH HOH . E 4 HOH A 60 423 67 HOH HOH . E 4 HOH A 61 424 68 HOH HOH . E 4 HOH A 62 425 69 HOH HOH . E 4 HOH A 63 426 70 HOH HOH . E 4 HOH A 64 427 71 HOH HOH . E 4 HOH A 65 428 72 HOH HOH . E 4 HOH A 66 429 73 HOH HOH . E 4 HOH A 67 430 74 HOH HOH . E 4 HOH A 68 431 75 HOH HOH . E 4 HOH A 69 432 76 HOH HOH . E 4 HOH A 70 433 78 HOH HOH . E 4 HOH A 71 434 79 HOH HOH . E 4 HOH A 72 435 81 HOH HOH . E 4 HOH A 73 436 82 HOH HOH . E 4 HOH A 74 437 83 HOH HOH . E 4 HOH A 75 438 84 HOH HOH . E 4 HOH A 76 439 85 HOH HOH . E 4 HOH A 77 440 86 HOH HOH . E 4 HOH A 78 441 87 HOH HOH . E 4 HOH A 79 442 88 HOH HOH . E 4 HOH A 80 443 89 HOH HOH . E 4 HOH A 81 444 90 HOH HOH . E 4 HOH A 82 445 91 HOH HOH . E 4 HOH A 83 446 92 HOH HOH . E 4 HOH A 84 447 93 HOH HOH . E 4 HOH A 85 448 94 HOH HOH . E 4 HOH A 86 449 95 HOH HOH . E 4 HOH A 87 450 96 HOH HOH . E 4 HOH A 88 451 97 HOH HOH . E 4 HOH A 89 452 98 HOH HOH . E 4 HOH A 90 453 99 HOH HOH . E 4 HOH A 91 454 100 HOH HOH . E 4 HOH A 92 455 102 HOH HOH . E 4 HOH A 93 456 103 HOH HOH . E 4 HOH A 94 457 104 HOH HOH . E 4 HOH A 95 458 105 HOH HOH . E 4 HOH A 96 459 106 HOH HOH . E 4 HOH A 97 460 107 HOH HOH . E 4 HOH A 98 461 108 HOH HOH . E 4 HOH A 99 462 109 HOH HOH . E 4 HOH A 100 463 110 HOH HOH . E 4 HOH A 101 464 111 HOH HOH . E 4 HOH A 102 465 112 HOH HOH . E 4 HOH A 103 466 113 HOH HOH . E 4 HOH A 104 467 114 HOH HOH . E 4 HOH A 105 468 115 HOH HOH . E 4 HOH A 106 469 116 HOH HOH . E 4 HOH A 107 470 117 HOH HOH . E 4 HOH A 108 471 118 HOH HOH . E 4 HOH A 109 472 119 HOH HOH . E 4 HOH A 110 473 120 HOH HOH . E 4 HOH A 111 474 121 HOH HOH . E 4 HOH A 112 475 122 HOH HOH . E 4 HOH A 113 476 123 HOH HOH . E 4 HOH A 114 477 124 HOH HOH . E 4 HOH A 115 478 125 HOH HOH . E 4 HOH A 116 479 126 HOH HOH . E 4 HOH A 117 480 127 HOH HOH . E 4 HOH A 118 481 128 HOH HOH . E 4 HOH A 119 482 129 HOH HOH . E 4 HOH A 120 483 130 HOH HOH . E 4 HOH A 121 484 131 HOH HOH . E 4 HOH A 122 485 132 HOH HOH . E 4 HOH A 123 486 133 HOH HOH . E 4 HOH A 124 487 134 HOH HOH . E 4 HOH A 125 488 135 HOH HOH . E 4 HOH A 126 489 136 HOH HOH . E 4 HOH A 127 490 138 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 SB2 . . . B 2 19.339 4.046 -13.413 1 39.13 ? O2 SB2 361 A 1 HETATM 2 C C1 SB2 . . . B 2 20.206 1.905 -12 1 38.15 ? C1 SB2 361 A 1 HETATM 3 S S1 SB2 . . . B 2 20.558 3.232 -13.137 1 37.38 ? S1 SB2 361 A 1 HETATM 4 C CA1 SB2 . . . B 2 21.426 2.799 -17.084 1 36.11 ? CA1 SB2 361 A 1 HETATM 5 C CA2 SB2 . . . B 2 21.022 3.317 -15.853 1 36.55 ? CA2 SB2 361 A 1 HETATM 6 C CA3 SB2 . . . B 2 21.072 2.535 -14.711 1 36.29 ? CA3 SB2 361 A 1 HETATM 7 C CA4 SB2 . . . B 2 21.529 1.226 -14.815 1 35.85 ? CA4 SB2 361 A 1 HETATM 8 C CA5 SB2 . . . B 2 21.937 0.707 -16.039 1 34.34 ? CA5 SB2 361 A 1 HETATM 9 C CA6 SB2 . . . B 2 21.905 1.496 -17.181 1 32.09 ? CA6 SB2 361 A 1 HETATM 10 N NB1 SB2 . . . B 2 22.474 1.514 -24.693 1 23.22 ? NB1 SB2 361 A 1 HETATM 11 C CB2 SB2 . . . B 2 22.403 0.261 -24.266 1 22.74 ? CB2 SB2 361 A 1 HETATM 12 C CB3 SB2 . . . B 2 22.444 -0.075 -22.916 1 23.01 ? CB3 SB2 361 A 1 HETATM 13 C CB4 SB2 . . . B 2 22.577 0.937 -21.959 1 25.62 ? CB4 SB2 361 A 1 HETATM 14 C CB5 SB2 . . . B 2 22.618 2.264 -22.434 1 25.74 ? CB5 SB2 361 A 1 HETATM 15 C CB6 SB2 . . . B 2 22.578 2.516 -23.821 1 26.56 ? CB6 SB2 361 A 1 HETATM 16 N NC1 SB2 . . . B 2 22.154 1.512 -19.618 1 26.6 ? NC1 SB2 361 A 1 HETATM 17 C CC2 SB2 . . . B 2 22.295 0.953 -18.415 1 31.2 ? CC2 SB2 361 A 1 HETATM 18 N NC3 SB2 . . . B 2 22.819 -0.261 -18.579 1 26.29 ? NC3 SB2 361 A 1 HETATM 19 C CC4 SB2 . . . B 2 23.019 -0.49 -19.87 1 23.25 ? CC4 SB2 361 A 1 HETATM 20 C CC5 SB2 . . . B 2 22.599 0.672 -20.562 1 26.5 ? CC5 SB2 361 A 1 HETATM 21 C CD1 SB2 . . . B 2 23.039 -2.912 -19.866 1 18.5 ? CD1 SB2 361 A 1 HETATM 22 C CD2 SB2 . . . B 2 23.609 -4.12 -20.272 1 18.1 ? CD2 SB2 361 A 1 HETATM 23 C CD3 SB2 . . . B 2 24.738 -4.105 -21.108 1 19.31 ? CD3 SB2 361 A 1 HETATM 24 C CD4 SB2 . . . B 2 25.277 -2.896 -21.539 1 18.04 ? CD4 SB2 361 A 1 HETATM 25 C CD5 SB2 . . . B 2 24.713 -1.692 -21.14 1 21.36 ? CD5 SB2 361 A 1 HETATM 26 C CD6 SB2 . . . B 2 23.577 -1.69 -20.324 1 22.97 ? CD6 SB2 361 A 1 HETATM 27 F FD3 SB2 . . . B 2 25.321 -5.267 -21.523 1 20.08 ? FD3 SB2 361 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #