data_3GCP # _model_server_result.job_id r7NqfCnkhI-fJyYOQKZOgw _model_server_result.datetime_utc '2024-10-10 03:28:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gcp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":362}' # _entry.id 3GCP # _exptl.entry_id 3GCP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GCP _cell.length_a 68.89 _cell.length_b 69.87 _cell.length_c 74.51 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GCP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 3GCP _atom_sites.fract_transf_matrix[1][1] 0.014516 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014312 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013421 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SB2 A 1 361 1 SB2 SB2 . C 3 BOG A 1 362 1 BOG BOG . D 3 BOG A 1 363 1 BOG BOG . E 4 HOH A 1 364 1 HOH HOH . E 4 HOH A 2 365 2 HOH HOH . E 4 HOH A 3 366 3 HOH HOH . E 4 HOH A 4 367 5 HOH HOH . E 4 HOH A 5 368 6 HOH HOH . E 4 HOH A 6 369 7 HOH HOH . E 4 HOH A 7 370 8 HOH HOH . E 4 HOH A 8 371 9 HOH HOH . E 4 HOH A 9 372 10 HOH HOH . E 4 HOH A 10 373 11 HOH HOH . E 4 HOH A 11 374 12 HOH HOH . E 4 HOH A 12 375 13 HOH HOH . E 4 HOH A 13 376 14 HOH HOH . E 4 HOH A 14 377 15 HOH HOH . E 4 HOH A 15 378 16 HOH HOH . E 4 HOH A 16 379 17 HOH HOH . E 4 HOH A 17 380 18 HOH HOH . E 4 HOH A 18 381 19 HOH HOH . E 4 HOH A 19 382 21 HOH HOH . E 4 HOH A 20 383 22 HOH HOH . E 4 HOH A 21 384 23 HOH HOH . E 4 HOH A 22 385 24 HOH HOH . E 4 HOH A 23 386 25 HOH HOH . E 4 HOH A 24 387 26 HOH HOH . E 4 HOH A 25 388 27 HOH HOH . E 4 HOH A 26 389 28 HOH HOH . E 4 HOH A 27 390 30 HOH HOH . E 4 HOH A 28 391 31 HOH HOH . E 4 HOH A 29 392 32 HOH HOH . E 4 HOH A 30 393 33 HOH HOH . E 4 HOH A 31 394 34 HOH HOH . E 4 HOH A 32 395 35 HOH HOH . E 4 HOH A 33 396 36 HOH HOH . E 4 HOH A 34 397 37 HOH HOH . E 4 HOH A 35 398 38 HOH HOH . E 4 HOH A 36 399 39 HOH HOH . E 4 HOH A 37 400 40 HOH HOH . E 4 HOH A 38 401 41 HOH HOH . E 4 HOH A 39 402 44 HOH HOH . E 4 HOH A 40 403 45 HOH HOH . E 4 HOH A 41 404 46 HOH HOH . E 4 HOH A 42 405 47 HOH HOH . E 4 HOH A 43 406 48 HOH HOH . E 4 HOH A 44 407 49 HOH HOH . E 4 HOH A 45 408 50 HOH HOH . E 4 HOH A 46 409 51 HOH HOH . E 4 HOH A 47 410 53 HOH HOH . E 4 HOH A 48 411 54 HOH HOH . E 4 HOH A 49 412 55 HOH HOH . E 4 HOH A 50 413 56 HOH HOH . E 4 HOH A 51 414 57 HOH HOH . E 4 HOH A 52 415 58 HOH HOH . E 4 HOH A 53 416 59 HOH HOH . E 4 HOH A 54 417 60 HOH HOH . E 4 HOH A 55 418 62 HOH HOH . E 4 HOH A 56 419 63 HOH HOH . E 4 HOH A 57 420 64 HOH HOH . E 4 HOH A 58 421 65 HOH HOH . E 4 HOH A 59 422 66 HOH HOH . E 4 HOH A 60 423 67 HOH HOH . E 4 HOH A 61 424 68 HOH HOH . E 4 HOH A 62 425 69 HOH HOH . E 4 HOH A 63 426 70 HOH HOH . E 4 HOH A 64 427 71 HOH HOH . E 4 HOH A 65 428 72 HOH HOH . E 4 HOH A 66 429 73 HOH HOH . E 4 HOH A 67 430 74 HOH HOH . E 4 HOH A 68 431 75 HOH HOH . E 4 HOH A 69 432 76 HOH HOH . E 4 HOH A 70 433 78 HOH HOH . E 4 HOH A 71 434 79 HOH HOH . E 4 HOH A 72 435 81 HOH HOH . E 4 HOH A 73 436 82 HOH HOH . E 4 HOH A 74 437 83 HOH HOH . E 4 HOH A 75 438 84 HOH HOH . E 4 HOH A 76 439 85 HOH HOH . E 4 HOH A 77 440 86 HOH HOH . E 4 HOH A 78 441 87 HOH HOH . E 4 HOH A 79 442 88 HOH HOH . E 4 HOH A 80 443 89 HOH HOH . E 4 HOH A 81 444 90 HOH HOH . E 4 HOH A 82 445 91 HOH HOH . E 4 HOH A 83 446 92 HOH HOH . E 4 HOH A 84 447 93 HOH HOH . E 4 HOH A 85 448 94 HOH HOH . E 4 HOH A 86 449 95 HOH HOH . E 4 HOH A 87 450 96 HOH HOH . E 4 HOH A 88 451 97 HOH HOH . E 4 HOH A 89 452 98 HOH HOH . E 4 HOH A 90 453 99 HOH HOH . E 4 HOH A 91 454 100 HOH HOH . E 4 HOH A 92 455 102 HOH HOH . E 4 HOH A 93 456 103 HOH HOH . E 4 HOH A 94 457 104 HOH HOH . E 4 HOH A 95 458 105 HOH HOH . E 4 HOH A 96 459 106 HOH HOH . E 4 HOH A 97 460 107 HOH HOH . E 4 HOH A 98 461 108 HOH HOH . E 4 HOH A 99 462 109 HOH HOH . E 4 HOH A 100 463 110 HOH HOH . E 4 HOH A 101 464 111 HOH HOH . E 4 HOH A 102 465 112 HOH HOH . E 4 HOH A 103 466 113 HOH HOH . E 4 HOH A 104 467 114 HOH HOH . E 4 HOH A 105 468 115 HOH HOH . E 4 HOH A 106 469 116 HOH HOH . E 4 HOH A 107 470 117 HOH HOH . E 4 HOH A 108 471 118 HOH HOH . E 4 HOH A 109 472 119 HOH HOH . E 4 HOH A 110 473 120 HOH HOH . E 4 HOH A 111 474 121 HOH HOH . E 4 HOH A 112 475 122 HOH HOH . E 4 HOH A 113 476 123 HOH HOH . E 4 HOH A 114 477 124 HOH HOH . E 4 HOH A 115 478 125 HOH HOH . E 4 HOH A 116 479 126 HOH HOH . E 4 HOH A 117 480 127 HOH HOH . E 4 HOH A 118 481 128 HOH HOH . E 4 HOH A 119 482 129 HOH HOH . E 4 HOH A 120 483 130 HOH HOH . E 4 HOH A 121 484 131 HOH HOH . E 4 HOH A 122 485 132 HOH HOH . E 4 HOH A 123 486 133 HOH HOH . E 4 HOH A 124 487 134 HOH HOH . E 4 HOH A 125 488 135 HOH HOH . E 4 HOH A 126 489 136 HOH HOH . E 4 HOH A 127 490 138 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . C 3 -5.504 -10.008 -6.819 1 32.84 ? C1 BOG 362 A 1 HETATM 2 O O1 BOG . . . C 3 -5.997 -8.964 -7.712 1 34.58 ? O1 BOG 362 A 1 HETATM 3 C C2 BOG . . . C 3 -6.151 -11.381 -7.025 1 32.27 ? C2 BOG 362 A 1 HETATM 4 O O2 BOG . . . C 3 -7.53 -11.24 -6.972 1 31.17 ? O2 BOG 362 A 1 HETATM 5 C C3 BOG . . . C 3 -5.682 -12.345 -5.931 1 34.44 ? C3 BOG 362 A 1 HETATM 6 O O3 BOG . . . C 3 -6.282 -13.619 -6.076 1 34.09 ? O3 BOG 362 A 1 HETATM 7 C C4 BOG . . . C 3 -4.156 -12.513 -6.046 1 36 ? C4 BOG 362 A 1 HETATM 8 O O4 BOG . . . C 3 -3.656 -13.318 -4.964 1 36.88 ? O4 BOG 362 A 1 HETATM 9 C C5 BOG . . . C 3 -3.501 -11.111 -6.075 1 34.3 ? C5 BOG 362 A 1 HETATM 10 O O5 BOG . . . C 3 -4.121 -10.262 -7.111 1 32.86 ? O5 BOG 362 A 1 HETATM 11 C C6 BOG . . . C 3 -1.999 -11.12 -6.326 1 33.47 ? C6 BOG 362 A 1 HETATM 12 O O6 BOG . . . C 3 -1.539 -9.845 -5.873 1 32.07 ? O6 BOG 362 A 1 HETATM 13 C C1' BOG . . . C 3 -5.559 -7.646 -7.318 1 33.53 ? C1' BOG 362 A 1 HETATM 14 C C2' BOG . . . C 3 -6.691 -6.933 -6.607 1 32.06 ? C2' BOG 362 A 1 HETATM 15 C C3' BOG . . . C 3 -6.177 -5.57 -6.139 1 33.75 ? C3' BOG 362 A 1 HETATM 16 C C4' BOG . . . C 3 -7.316 -4.783 -5.494 1 33.19 ? C4' BOG 362 A 1 HETATM 17 C C5' BOG . . . C 3 -6.9 -3.334 -5.251 1 33.11 ? C5' BOG 362 A 1 HETATM 18 C C6' BOG . . . C 3 -7.727 -2.781 -4.097 1 33.61 ? C6' BOG 362 A 1 HETATM 19 C C7' BOG . . . C 3 -8.003 -1.29 -4.222 1 35.2 ? C7' BOG 362 A 1 HETATM 20 C C8' BOG . . . C 3 -8.896 -0.88 -3.029 1 37.62 ? C8' BOG 362 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 20 #