data_3GCQ # _model_server_result.job_id gDP1eaBX_cBWjA_l5NmC-w _model_server_result.datetime_utc '2024-10-10 05:19:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gcq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 3GCQ # _exptl.entry_id 3GCQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GCQ _cell.length_a 66.56 _cell.length_b 74.79 _cell.length_c 76.82 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GCQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 142 n n C1 C2 BOG sing 143 n n C1 O5 BOG sing 144 n n C1 H1 BOG sing 145 n n O1 C1' BOG sing 146 n n C2 O2 BOG sing 147 n n C2 C3 BOG sing 148 n n C2 H2 BOG sing 149 n n O2 HO2 BOG sing 150 n n C3 O3 BOG sing 151 n n C3 C4 BOG sing 152 n n C3 H3 BOG sing 153 n n O3 HO3 BOG sing 154 n n C4 O4 BOG sing 155 n n C4 C5 BOG sing 156 n n C4 H4 BOG sing 157 n n O4 HO4 BOG sing 158 n n C5 O5 BOG sing 159 n n C5 C6 BOG sing 160 n n C5 H5 BOG sing 161 n n C6 O6 BOG sing 162 n n C6 H61 BOG sing 163 n n C6 H62 BOG sing 164 n n O6 HO6 BOG sing 165 n n C1' C2' BOG sing 166 n n C1' "H1'1" BOG sing 167 n n C1' "H1'2" BOG sing 168 n n C2' C3' BOG sing 169 n n C2' "H2'1" BOG sing 170 n n C2' "H2'2" BOG sing 171 n n C3' C4' BOG sing 172 n n C3' "H3'1" BOG sing 173 n n C3' "H3'2" BOG sing 174 n n C4' C5' BOG sing 175 n n C4' "H4'1" BOG sing 176 n n C4' "H4'2" BOG sing 177 n n C5' C6' BOG sing 178 n n C5' "H5'1" BOG sing 179 n n C5' "H5'2" BOG sing 180 n n C6' C7' BOG sing 181 n n C6' "H6'1" BOG sing 182 n n C6' "H6'2" BOG sing 183 n n C7' C8' BOG sing 184 n n C7' "H7'1" BOG sing 185 n n C7' "H7'2" BOG sing 186 n n C8' "H8'1" BOG sing 187 n n C8' "H8'2" BOG sing 188 n n C8' "H8'3" BOG sing 189 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 3GCQ _atom_sites.fract_transf_matrix[1][1] 0.015024 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013371 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013017 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1BU A 1 401 401 1BU 1BU . C 3 BOG A 1 402 402 BOG BOG . D 4 HOH A 1 403 403 HOH HOH . D 4 HOH A 2 404 3 HOH HOH . D 4 HOH A 3 405 4 HOH HOH . D 4 HOH A 4 406 5 HOH HOH . D 4 HOH A 5 407 6 HOH HOH . D 4 HOH A 6 408 7 HOH HOH . D 4 HOH A 7 409 8 HOH HOH . D 4 HOH A 8 410 9 HOH HOH . D 4 HOH A 9 411 10 HOH HOH . D 4 HOH A 10 412 11 HOH HOH . D 4 HOH A 11 413 12 HOH HOH . D 4 HOH A 12 414 13 HOH HOH . D 4 HOH A 13 415 14 HOH HOH . D 4 HOH A 14 416 15 HOH HOH . D 4 HOH A 15 417 17 HOH HOH . D 4 HOH A 16 418 18 HOH HOH . D 4 HOH A 17 419 19 HOH HOH . D 4 HOH A 18 420 20 HOH HOH . D 4 HOH A 19 421 21 HOH HOH . D 4 HOH A 20 422 22 HOH HOH . D 4 HOH A 21 423 23 HOH HOH . D 4 HOH A 22 424 24 HOH HOH . D 4 HOH A 23 425 25 HOH HOH . D 4 HOH A 24 426 26 HOH HOH . D 4 HOH A 25 427 27 HOH HOH . D 4 HOH A 26 428 28 HOH HOH . D 4 HOH A 27 429 30 HOH HOH . D 4 HOH A 28 430 31 HOH HOH . D 4 HOH A 29 431 32 HOH HOH . D 4 HOH A 30 432 33 HOH HOH . D 4 HOH A 31 433 34 HOH HOH . D 4 HOH A 32 434 35 HOH HOH . D 4 HOH A 33 435 36 HOH HOH . D 4 HOH A 34 436 38 HOH HOH . D 4 HOH A 35 437 39 HOH HOH . D 4 HOH A 36 438 40 HOH HOH . D 4 HOH A 37 439 42 HOH HOH . D 4 HOH A 38 440 44 HOH HOH . D 4 HOH A 39 441 45 HOH HOH . D 4 HOH A 40 442 46 HOH HOH . D 4 HOH A 41 443 47 HOH HOH . D 4 HOH A 42 444 48 HOH HOH . D 4 HOH A 43 445 49 HOH HOH . D 4 HOH A 44 446 50 HOH HOH . D 4 HOH A 45 447 52 HOH HOH . D 4 HOH A 46 448 53 HOH HOH . D 4 HOH A 47 449 54 HOH HOH . D 4 HOH A 48 450 55 HOH HOH . D 4 HOH A 49 451 56 HOH HOH . D 4 HOH A 50 452 57 HOH HOH . D 4 HOH A 51 453 58 HOH HOH . D 4 HOH A 52 454 59 HOH HOH . D 4 HOH A 53 455 60 HOH HOH . D 4 HOH A 54 456 61 HOH HOH . D 4 HOH A 55 457 62 HOH HOH . D 4 HOH A 56 458 63 HOH HOH . D 4 HOH A 57 459 64 HOH HOH . D 4 HOH A 58 460 65 HOH HOH . D 4 HOH A 59 461 67 HOH HOH . D 4 HOH A 60 462 69 HOH HOH . D 4 HOH A 61 463 71 HOH HOH . D 4 HOH A 62 464 72 HOH HOH . D 4 HOH A 63 465 73 HOH HOH . D 4 HOH A 64 466 74 HOH HOH . D 4 HOH A 65 467 75 HOH HOH . D 4 HOH A 66 468 76 HOH HOH . D 4 HOH A 67 469 79 HOH HOH . D 4 HOH A 68 470 81 HOH HOH . D 4 HOH A 69 471 82 HOH HOH . D 4 HOH A 70 472 83 HOH HOH . D 4 HOH A 71 473 84 HOH HOH . D 4 HOH A 72 474 86 HOH HOH . D 4 HOH A 73 475 87 HOH HOH . D 4 HOH A 74 476 88 HOH HOH . D 4 HOH A 75 477 89 HOH HOH . D 4 HOH A 76 478 90 HOH HOH . D 4 HOH A 77 479 93 HOH HOH . D 4 HOH A 78 480 94 HOH HOH . D 4 HOH A 79 481 95 HOH HOH . D 4 HOH A 80 482 98 HOH HOH . D 4 HOH A 81 483 99 HOH HOH . D 4 HOH A 82 484 100 HOH HOH . D 4 HOH A 83 485 101 HOH HOH . D 4 HOH A 84 486 102 HOH HOH . D 4 HOH A 85 487 103 HOH HOH . D 4 HOH A 86 488 105 HOH HOH . D 4 HOH A 87 489 106 HOH HOH . D 4 HOH A 88 490 107 HOH HOH . D 4 HOH A 89 491 108 HOH HOH . D 4 HOH A 90 492 109 HOH HOH . D 4 HOH A 91 493 111 HOH HOH . D 4 HOH A 92 494 113 HOH HOH . D 4 HOH A 93 495 114 HOH HOH . D 4 HOH A 94 496 116 HOH HOH . D 4 HOH A 95 497 117 HOH HOH . D 4 HOH A 96 498 119 HOH HOH . D 4 HOH A 97 499 120 HOH HOH . D 4 HOH A 98 500 121 HOH HOH . D 4 HOH A 99 501 122 HOH HOH . D 4 HOH A 100 502 123 HOH HOH . D 4 HOH A 101 503 127 HOH HOH . D 4 HOH A 102 504 128 HOH HOH . D 4 HOH A 103 505 130 HOH HOH . D 4 HOH A 104 506 133 HOH HOH . D 4 HOH A 105 507 134 HOH HOH . D 4 HOH A 106 508 136 HOH HOH . D 4 HOH A 107 509 137 HOH HOH . D 4 HOH A 108 510 138 HOH HOH . D 4 HOH A 109 511 139 HOH HOH . D 4 HOH A 110 512 144 HOH HOH . D 4 HOH A 111 513 145 HOH HOH . D 4 HOH A 112 514 147 HOH HOH . D 4 HOH A 113 515 149 HOH HOH . D 4 HOH A 114 516 152 HOH HOH . D 4 HOH A 115 517 155 HOH HOH . D 4 HOH A 116 518 156 HOH HOH . D 4 HOH A 117 519 158 HOH HOH . D 4 HOH A 118 520 159 HOH HOH . D 4 HOH A 119 521 160 HOH HOH . D 4 HOH A 120 522 166 HOH HOH . D 4 HOH A 121 523 167 HOH HOH . D 4 HOH A 122 524 168 HOH HOH . D 4 HOH A 123 525 169 HOH HOH . D 4 HOH A 124 526 172 HOH HOH . D 4 HOH A 125 527 173 HOH HOH . D 4 HOH A 126 528 179 HOH HOH . D 4 HOH A 127 529 180 HOH HOH . D 4 HOH A 128 530 181 HOH HOH . D 4 HOH A 129 531 183 HOH HOH . D 4 HOH A 130 532 184 HOH HOH . D 4 HOH A 131 533 186 HOH HOH . D 4 HOH A 132 534 191 HOH HOH . D 4 HOH A 133 535 194 HOH HOH . D 4 HOH A 134 536 195 HOH HOH . D 4 HOH A 135 537 196 HOH HOH . D 4 HOH A 136 538 197 HOH HOH . D 4 HOH A 137 539 198 HOH HOH . D 4 HOH A 138 540 199 HOH HOH . D 4 HOH A 139 541 200 HOH HOH . D 4 HOH A 140 542 201 HOH HOH . D 4 HOH A 141 543 202 HOH HOH . D 4 HOH A 142 544 203 HOH HOH . D 4 HOH A 143 545 204 HOH HOH . D 4 HOH A 144 546 205 HOH HOH . D 4 HOH A 145 547 206 HOH HOH . D 4 HOH A 146 548 207 HOH HOH . D 4 HOH A 147 549 208 HOH HOH . D 4 HOH A 148 550 209 HOH HOH . D 4 HOH A 149 551 212 HOH HOH . D 4 HOH A 150 552 213 HOH HOH . D 4 HOH A 151 553 215 HOH HOH . D 4 HOH A 152 554 218 HOH HOH . D 4 HOH A 153 555 219 HOH HOH . D 4 HOH A 154 556 220 HOH HOH . D 4 HOH A 155 557 221 HOH HOH . D 4 HOH A 156 558 222 HOH HOH . D 4 HOH A 157 559 224 HOH HOH . D 4 HOH A 158 560 226 HOH HOH . D 4 HOH A 159 561 227 HOH HOH . D 4 HOH A 160 562 229 HOH HOH . D 4 HOH A 161 563 230 HOH HOH . D 4 HOH A 162 564 231 HOH HOH . D 4 HOH A 163 565 233 HOH HOH . D 4 HOH A 164 566 234 HOH HOH . D 4 HOH A 165 567 235 HOH HOH . D 4 HOH A 166 568 236 HOH HOH . D 4 HOH A 167 569 237 HOH HOH . D 4 HOH A 168 570 239 HOH HOH . D 4 HOH A 169 571 241 HOH HOH . D 4 HOH A 170 572 242 HOH HOH . D 4 HOH A 171 573 243 HOH HOH . D 4 HOH A 172 574 244 HOH HOH . D 4 HOH A 173 575 245 HOH HOH . D 4 HOH A 174 576 246 HOH HOH . D 4 HOH A 175 577 247 HOH HOH . D 4 HOH A 176 578 248 HOH HOH . D 4 HOH A 177 579 249 HOH HOH . D 4 HOH A 178 580 250 HOH HOH . D 4 HOH A 179 581 251 HOH HOH . D 4 HOH A 180 582 252 HOH HOH . D 4 HOH A 181 583 253 HOH HOH . D 4 HOH A 182 584 254 HOH HOH . D 4 HOH A 183 585 255 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . C 3 24.117 -13.172 -8.408 1 51.97 ? C1 BOG 402 A 1 HETATM 2 O O1 BOG . . . C 3 24.492 -12.601 -9.661 1 51.09 ? O1 BOG 402 A 1 HETATM 3 C C2 BOG . . . C 3 24.891 -12.541 -7.246 1 51.92 ? C2 BOG 402 A 1 HETATM 4 O O2 BOG . . . C 3 26.287 -12.687 -7.451 1 51.07 ? O2 BOG 402 A 1 HETATM 5 C C3 BOG . . . C 3 24.481 -13.218 -5.932 1 52.38 ? C3 BOG 402 A 1 HETATM 6 O O3 BOG . . . C 3 25.201 -12.642 -4.842 1 52.79 ? O3 BOG 402 A 1 HETATM 7 C C4 BOG . . . C 3 22.958 -13.076 -5.698 1 53.94 ? C4 BOG 402 A 1 HETATM 8 O O4 BOG . . . C 3 22.573 -13.765 -4.472 1 53.43 ? O4 BOG 402 A 1 HETATM 9 C C5 BOG . . . C 3 22.153 -13.529 -6.969 1 53.89 ? C5 BOG 402 A 1 HETATM 10 O O5 BOG . . . C 3 22.692 -12.881 -8.175 1 53.65 ? O5 BOG 402 A 1 HETATM 11 C C6 BOG . . . C 3 20.593 -13.455 -7.051 1 51.79 ? C6 BOG 402 A 1 HETATM 12 O O6 BOG . . . C 3 20.079 -12.256 -6.482 1 54.06 ? O6 BOG 402 A 1 HETATM 13 C C1' BOG . . . C 3 23.775 -13.261 -10.701 1 51.3 ? C1' BOG 402 A 1 HETATM 14 C C2' BOG . . . C 3 24.549 -13.415 -12.001 1 52.59 ? C2' BOG 402 A 1 HETATM 15 C C3' BOG . . . C 3 25.275 -14.76 -12.053 1 54.37 ? C3' BOG 402 A 1 HETATM 16 C C4' BOG . . . C 3 24.649 -15.659 -13.119 1 54.29 ? C4' BOG 402 A 1 HETATM 17 C C5' BOG . . . C 3 25.685 -16.007 -14.17 1 54.02 ? C5' BOG 402 A 1 HETATM 18 C C6' BOG . . . C 3 25.247 -17.215 -14.993 1 56.01 ? C6' BOG 402 A 1 HETATM 19 C C7' BOG . . . C 3 25.887 -17.149 -16.379 1 56.32 ? C7' BOG 402 A 1 HETATM 20 C C8' BOG . . . C 3 26.779 -18.362 -16.637 1 58.04 ? C8' BOG 402 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #