data_3GCS # _model_server_result.job_id Mddn7sR3-CEuIgd_MfU_WA _model_server_result.datetime_utc '2024-11-25 08:39:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gcs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 3GCS # _exptl.entry_id 3GCS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 464.825 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{4-[({[4-CHLORO-3-(TRIFLUOROMETHYL)PHENYL]AMINO}CARBONYL)AMINO]PHENOXY}-N-METHYLPYRIDINE-2-CARBOXAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GCS _cell.length_a 67.48 _cell.length_b 69.85 _cell.length_c 74.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GCS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H16 Cl F3 N4 O3' _chem_comp.formula_weight 464.825 _chem_comp.id BAX _chem_comp.mon_nstd_flag . _chem_comp.name 4-{4-[({[4-CHLORO-3-(TRIFLUOROMETHYL)PHENYL]AMINO}CARBONYL)AMINO]PHENOXY}-N-METHYLPYRIDINE-2-CARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Sorafenib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BAX doub 70 n y C1 C6 BAX sing 71 n y C1 H1 BAX sing 72 n n C2 C3 BAX sing 73 n y C2 N12 BAX sing 74 n n C3 C4 BAX doub 75 n y C3 H3 BAX sing 76 n n C4 C5 BAX sing 77 n y C4 H4 BAX sing 78 n n C13 N12 BAX sing 79 n n C13 N14 BAX sing 80 n n C13 O15 BAX doub 81 n n C16 C17 BAX doub 82 n y C16 C21 BAX sing 83 n y C16 N14 BAX sing 84 n n C17 C18 BAX sing 85 n y C17 H17 BAX sing 86 n n C18 C19 BAX doub 87 n y C18 H18 BAX sing 88 n n C19 C20 BAX sing 89 n y C19 O22 BAX sing 90 n n C20 C21 BAX doub 91 n y C20 H20 BAX sing 92 n n C21 H21 BAX sing 93 n n O22 C23 BAX sing 94 n n C24 C25 BAX doub 95 n y C24 C23 BAX sing 96 n y C24 H24 BAX sing 97 n n C25 N26 BAX sing 98 n y C25 H25 BAX sing 99 n n C27 C28 BAX sing 100 n y C27 N26 BAX doub 101 n y C27 C29 BAX sing 102 n n C28 C23 BAX doub 103 n y C28 H28 BAX sing 104 n n N30 C31 BAX sing 105 n n N30 C29 BAX sing 106 n n N30 H30 BAX sing 107 n n C31 H311 BAX sing 108 n n C31 H312 BAX sing 109 n n C31 H313 BAX sing 110 n n C5 C6 BAX doub 111 n y C5 CL11 BAX sing 112 n n C6 C7 BAX sing 113 n n C7 F8 BAX sing 114 n n C7 F9 BAX sing 115 n n C7 F10 BAX sing 116 n n N12 H12 BAX sing 117 n n N14 H14 BAX sing 118 n n C29 O32 BAX doub 119 n n # _atom_sites.entry_id 3GCS _atom_sites.fract_transf_matrix[1][1] 0.014819 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014316 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BAX A 1 401 401 BAX BAX . C 3 BOG A 1 402 402 BOG BOG . D 4 HOH A 1 403 403 HOH HOH . D 4 HOH A 2 404 2 HOH HOH . D 4 HOH A 3 405 3 HOH HOH . D 4 HOH A 4 406 4 HOH HOH . D 4 HOH A 5 407 5 HOH HOH . D 4 HOH A 6 408 6 HOH HOH . D 4 HOH A 7 409 7 HOH HOH . D 4 HOH A 8 410 8 HOH HOH . D 4 HOH A 9 411 9 HOH HOH . D 4 HOH A 10 412 10 HOH HOH . D 4 HOH A 11 413 11 HOH HOH . D 4 HOH A 12 414 12 HOH HOH . D 4 HOH A 13 415 13 HOH HOH . D 4 HOH A 14 416 14 HOH HOH . D 4 HOH A 15 417 15 HOH HOH . D 4 HOH A 16 418 16 HOH HOH . D 4 HOH A 17 419 17 HOH HOH . D 4 HOH A 18 420 18 HOH HOH . D 4 HOH A 19 421 19 HOH HOH . D 4 HOH A 20 422 20 HOH HOH . D 4 HOH A 21 423 21 HOH HOH . D 4 HOH A 22 424 22 HOH HOH . D 4 HOH A 23 425 23 HOH HOH . D 4 HOH A 24 426 24 HOH HOH . D 4 HOH A 25 427 25 HOH HOH . D 4 HOH A 26 428 26 HOH HOH . D 4 HOH A 27 429 27 HOH HOH . D 4 HOH A 28 430 28 HOH HOH . D 4 HOH A 29 431 29 HOH HOH . D 4 HOH A 30 432 30 HOH HOH . D 4 HOH A 31 433 31 HOH HOH . D 4 HOH A 32 434 32 HOH HOH . D 4 HOH A 33 435 33 HOH HOH . D 4 HOH A 34 436 34 HOH HOH . D 4 HOH A 35 437 35 HOH HOH . D 4 HOH A 36 438 36 HOH HOH . D 4 HOH A 37 439 37 HOH HOH . D 4 HOH A 38 440 38 HOH HOH . D 4 HOH A 39 441 39 HOH HOH . D 4 HOH A 40 442 40 HOH HOH . D 4 HOH A 41 443 41 HOH HOH . D 4 HOH A 42 444 42 HOH HOH . D 4 HOH A 43 445 43 HOH HOH . D 4 HOH A 44 446 44 HOH HOH . D 4 HOH A 45 447 45 HOH HOH . D 4 HOH A 46 448 46 HOH HOH . D 4 HOH A 47 449 47 HOH HOH . D 4 HOH A 48 450 49 HOH HOH . D 4 HOH A 49 451 50 HOH HOH . D 4 HOH A 50 452 51 HOH HOH . D 4 HOH A 51 453 52 HOH HOH . D 4 HOH A 52 454 53 HOH HOH . D 4 HOH A 53 455 54 HOH HOH . D 4 HOH A 54 456 55 HOH HOH . D 4 HOH A 55 457 56 HOH HOH . D 4 HOH A 56 458 57 HOH HOH . D 4 HOH A 57 459 58 HOH HOH . D 4 HOH A 58 460 59 HOH HOH . D 4 HOH A 59 461 60 HOH HOH . D 4 HOH A 60 462 61 HOH HOH . D 4 HOH A 61 463 62 HOH HOH . D 4 HOH A 62 464 63 HOH HOH . D 4 HOH A 63 465 64 HOH HOH . D 4 HOH A 64 466 65 HOH HOH . D 4 HOH A 65 467 66 HOH HOH . D 4 HOH A 66 468 67 HOH HOH . D 4 HOH A 67 469 68 HOH HOH . D 4 HOH A 68 470 69 HOH HOH . D 4 HOH A 69 471 71 HOH HOH . D 4 HOH A 70 472 72 HOH HOH . D 4 HOH A 71 473 73 HOH HOH . D 4 HOH A 72 474 74 HOH HOH . D 4 HOH A 73 475 75 HOH HOH . D 4 HOH A 74 476 76 HOH HOH . D 4 HOH A 75 477 77 HOH HOH . D 4 HOH A 76 478 78 HOH HOH . D 4 HOH A 77 479 79 HOH HOH . D 4 HOH A 78 480 80 HOH HOH . D 4 HOH A 79 481 82 HOH HOH . D 4 HOH A 80 482 83 HOH HOH . D 4 HOH A 81 483 84 HOH HOH . D 4 HOH A 82 484 85 HOH HOH . D 4 HOH A 83 485 86 HOH HOH . D 4 HOH A 84 486 87 HOH HOH . D 4 HOH A 85 487 88 HOH HOH . D 4 HOH A 86 488 89 HOH HOH . D 4 HOH A 87 489 90 HOH HOH . D 4 HOH A 88 490 91 HOH HOH . D 4 HOH A 89 491 92 HOH HOH . D 4 HOH A 90 492 93 HOH HOH . D 4 HOH A 91 493 94 HOH HOH . D 4 HOH A 92 494 95 HOH HOH . D 4 HOH A 93 495 97 HOH HOH . D 4 HOH A 94 496 98 HOH HOH . D 4 HOH A 95 497 99 HOH HOH . D 4 HOH A 96 498 100 HOH HOH . D 4 HOH A 97 499 101 HOH HOH . D 4 HOH A 98 500 102 HOH HOH . D 4 HOH A 99 501 103 HOH HOH . D 4 HOH A 100 502 104 HOH HOH . D 4 HOH A 101 503 105 HOH HOH . D 4 HOH A 102 504 106 HOH HOH . D 4 HOH A 103 505 107 HOH HOH . D 4 HOH A 104 506 108 HOH HOH . D 4 HOH A 105 507 109 HOH HOH . D 4 HOH A 106 508 110 HOH HOH . D 4 HOH A 107 509 111 HOH HOH . D 4 HOH A 108 510 112 HOH HOH . D 4 HOH A 109 511 113 HOH HOH . D 4 HOH A 110 512 114 HOH HOH . D 4 HOH A 111 513 115 HOH HOH . D 4 HOH A 112 514 116 HOH HOH . D 4 HOH A 113 515 117 HOH HOH . D 4 HOH A 114 516 120 HOH HOH . D 4 HOH A 115 517 121 HOH HOH . D 4 HOH A 116 518 122 HOH HOH . D 4 HOH A 117 519 123 HOH HOH . D 4 HOH A 118 520 124 HOH HOH . D 4 HOH A 119 521 125 HOH HOH . D 4 HOH A 120 522 126 HOH HOH . D 4 HOH A 121 523 127 HOH HOH . D 4 HOH A 122 524 128 HOH HOH . D 4 HOH A 123 525 130 HOH HOH . D 4 HOH A 124 526 131 HOH HOH . D 4 HOH A 125 527 132 HOH HOH . D 4 HOH A 126 528 133 HOH HOH . D 4 HOH A 127 529 134 HOH HOH . D 4 HOH A 128 530 135 HOH HOH . D 4 HOH A 129 531 136 HOH HOH . D 4 HOH A 130 532 137 HOH HOH . D 4 HOH A 131 533 138 HOH HOH . D 4 HOH A 132 534 139 HOH HOH . D 4 HOH A 133 535 140 HOH HOH . D 4 HOH A 134 536 141 HOH HOH . D 4 HOH A 135 537 142 HOH HOH . D 4 HOH A 136 538 143 HOH HOH . D 4 HOH A 137 539 144 HOH HOH . D 4 HOH A 138 540 145 HOH HOH . D 4 HOH A 139 541 146 HOH HOH . D 4 HOH A 140 542 147 HOH HOH . D 4 HOH A 141 543 148 HOH HOH . D 4 HOH A 142 544 149 HOH HOH . D 4 HOH A 143 545 150 HOH HOH . D 4 HOH A 144 546 151 HOH HOH . D 4 HOH A 145 547 152 HOH HOH . D 4 HOH A 146 548 153 HOH HOH . D 4 HOH A 147 549 154 HOH HOH . D 4 HOH A 148 550 155 HOH HOH . D 4 HOH A 149 551 156 HOH HOH . D 4 HOH A 150 552 157 HOH HOH . D 4 HOH A 151 553 158 HOH HOH . D 4 HOH A 152 554 159 HOH HOH . D 4 HOH A 153 555 160 HOH HOH . D 4 HOH A 154 556 161 HOH HOH . D 4 HOH A 155 557 162 HOH HOH . D 4 HOH A 156 558 163 HOH HOH . D 4 HOH A 157 559 164 HOH HOH . D 4 HOH A 158 560 165 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BAX . . . B 2 -16.369 -7.323 17.99 1 14.87 ? C1 BAX 401 A 1 HETATM 2 C C2 BAX . . . B 2 -17.154 -7.003 16.868 1 17.26 ? C2 BAX 401 A 1 HETATM 3 C C3 BAX . . . B 2 -16.69 -7.337 15.595 1 15.23 ? C3 BAX 401 A 1 HETATM 4 C C4 BAX . . . B 2 -15.46 -7.959 15.423 1 13.04 ? C4 BAX 401 A 1 HETATM 5 C C13 BAX . . . B 2 -18.708 -5.495 17.931 1 14.56 ? C13 BAX 401 A 1 HETATM 6 C C16 BAX . . . B 2 -20.55 -4.13 18.672 1 12.33 ? C16 BAX 401 A 1 HETATM 7 C C17 BAX . . . B 2 -19.822 -3.108 19.276 1 15.17 ? C17 BAX 401 A 1 HETATM 8 C C18 BAX . . . B 2 -20.435 -2.195 20.141 1 14.9 ? C18 BAX 401 A 1 HETATM 9 C C19 BAX . . . B 2 -21.819 -2.287 20.347 1 18.89 ? C19 BAX 401 A 1 HETATM 10 C C20 BAX . . . B 2 -22.554 -3.297 19.749 1 15.29 ? C20 BAX 401 A 1 HETATM 11 C C21 BAX . . . B 2 -21.93 -4.215 18.915 1 15.29 ? C21 BAX 401 A 1 HETATM 12 O O22 BAX . . . B 2 -22.491 -1.447 21.208 1 23.8 ? O22 BAX 401 A 1 HETATM 13 C C24 BAX . . . B 2 -22.185 0.561 19.976 1 27.8 ? C24 BAX 401 A 1 HETATM 14 C C25 BAX . . . B 2 -22.069 1.953 20.028 1 28.82 ? C25 BAX 401 A 1 HETATM 15 C C27 BAX . . . B 2 -22.295 1.943 22.374 1 28.56 ? C27 BAX 401 A 1 HETATM 16 C C28 BAX . . . B 2 -22.425 0.555 22.379 1 27.86 ? C28 BAX 401 A 1 HETATM 17 N N30 BAX . . . B 2 -22.371 4.068 23.553 1 28.83 ? N30 BAX 401 A 1 HETATM 18 C C31 BAX . . . B 2 -22.42 4.891 24.772 1 27.44 ? C31 BAX 401 A 1 HETATM 19 C C5 BAX . . . B 2 -14.674 -8.242 16.563 1 15.66 ? C5 BAX 401 A 1 HETATM 20 C C6 BAX . . . B 2 -15.112 -7.933 17.845 1 17.56 ? C6 BAX 401 A 1 HETATM 21 C C7 BAX . . . B 2 -14.258 -8.275 19.099 1 16.49 ? C7 BAX 401 A 1 HETATM 22 F F8 BAX . . . B 2 -14.929 -7.886 20.138 1 16.31 ? F8 BAX 401 A 1 HETATM 23 F F9 BAX . . . B 2 -14.026 -9.583 19.209 1 16.52 ? F9 BAX 401 A 1 HETATM 24 F F10 BAX . . . B 2 -13.109 -7.634 19.185 1 18.78 ? F10 BAX 401 A 1 HETATM 25 CL CL11 BAX . . . B 2 -13.151 -9 16.378 1 18.74 ? CL11 BAX 401 A 1 HETATM 26 N N12 BAX . . . B 2 -18.375 -6.401 16.987 1 15.74 ? N12 BAX 401 A 1 HETATM 27 N N14 BAX . . . B 2 -19.97 -5.025 17.855 1 14.71 ? N14 BAX 401 A 1 HETATM 28 O O15 BAX . . . B 2 -17.923 -5.131 18.824 1 11.91 ? O15 BAX 401 A 1 HETATM 29 C C23 BAX . . . B 2 -22.347 -0.123 21.172 1 24.88 ? C23 BAX 401 A 1 HETATM 30 N N26 BAX . . . B 2 -22.119 2.58 21.2 1 28.94 ? N26 BAX 401 A 1 HETATM 31 C C29 BAX . . . B 2 -22.351 2.74 23.69 1 28.38 ? C29 BAX 401 A 1 HETATM 32 O O32 BAX . . . B 2 -22.379 2.159 24.771 1 30 ? O32 BAX 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #