data_3GCS # _model_server_result.job_id pssRk8cxv0XZHGReaIrIJQ _model_server_result.datetime_utc '2024-11-25 08:57:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gcs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 3GCS # _exptl.entry_id 3GCS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GCS _cell.length_a 67.48 _cell.length_b 69.85 _cell.length_c 74.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GCS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 120 n n C1 C2 BOG sing 121 n n C1 O5 BOG sing 122 n n C1 H1 BOG sing 123 n n O1 C1' BOG sing 124 n n C2 O2 BOG sing 125 n n C2 C3 BOG sing 126 n n C2 H2 BOG sing 127 n n O2 HO2 BOG sing 128 n n C3 O3 BOG sing 129 n n C3 C4 BOG sing 130 n n C3 H3 BOG sing 131 n n O3 HO3 BOG sing 132 n n C4 O4 BOG sing 133 n n C4 C5 BOG sing 134 n n C4 H4 BOG sing 135 n n O4 HO4 BOG sing 136 n n C5 O5 BOG sing 137 n n C5 C6 BOG sing 138 n n C5 H5 BOG sing 139 n n C6 O6 BOG sing 140 n n C6 H61 BOG sing 141 n n C6 H62 BOG sing 142 n n O6 HO6 BOG sing 143 n n C1' C2' BOG sing 144 n n C1' "H1'1" BOG sing 145 n n C1' "H1'2" BOG sing 146 n n C2' C3' BOG sing 147 n n C2' "H2'1" BOG sing 148 n n C2' "H2'2" BOG sing 149 n n C3' C4' BOG sing 150 n n C3' "H3'1" BOG sing 151 n n C3' "H3'2" BOG sing 152 n n C4' C5' BOG sing 153 n n C4' "H4'1" BOG sing 154 n n C4' "H4'2" BOG sing 155 n n C5' C6' BOG sing 156 n n C5' "H5'1" BOG sing 157 n n C5' "H5'2" BOG sing 158 n n C6' C7' BOG sing 159 n n C6' "H6'1" BOG sing 160 n n C6' "H6'2" BOG sing 161 n n C7' C8' BOG sing 162 n n C7' "H7'1" BOG sing 163 n n C7' "H7'2" BOG sing 164 n n C8' "H8'1" BOG sing 165 n n C8' "H8'2" BOG sing 166 n n C8' "H8'3" BOG sing 167 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 3GCS _atom_sites.fract_transf_matrix[1][1] 0.014819 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014316 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BAX A 1 401 401 BAX BAX . C 3 BOG A 1 402 402 BOG BOG . D 4 HOH A 1 403 403 HOH HOH . D 4 HOH A 2 404 2 HOH HOH . D 4 HOH A 3 405 3 HOH HOH . D 4 HOH A 4 406 4 HOH HOH . D 4 HOH A 5 407 5 HOH HOH . D 4 HOH A 6 408 6 HOH HOH . D 4 HOH A 7 409 7 HOH HOH . D 4 HOH A 8 410 8 HOH HOH . D 4 HOH A 9 411 9 HOH HOH . D 4 HOH A 10 412 10 HOH HOH . D 4 HOH A 11 413 11 HOH HOH . D 4 HOH A 12 414 12 HOH HOH . D 4 HOH A 13 415 13 HOH HOH . D 4 HOH A 14 416 14 HOH HOH . D 4 HOH A 15 417 15 HOH HOH . D 4 HOH A 16 418 16 HOH HOH . D 4 HOH A 17 419 17 HOH HOH . D 4 HOH A 18 420 18 HOH HOH . D 4 HOH A 19 421 19 HOH HOH . D 4 HOH A 20 422 20 HOH HOH . D 4 HOH A 21 423 21 HOH HOH . D 4 HOH A 22 424 22 HOH HOH . D 4 HOH A 23 425 23 HOH HOH . D 4 HOH A 24 426 24 HOH HOH . D 4 HOH A 25 427 25 HOH HOH . D 4 HOH A 26 428 26 HOH HOH . D 4 HOH A 27 429 27 HOH HOH . D 4 HOH A 28 430 28 HOH HOH . D 4 HOH A 29 431 29 HOH HOH . D 4 HOH A 30 432 30 HOH HOH . D 4 HOH A 31 433 31 HOH HOH . D 4 HOH A 32 434 32 HOH HOH . D 4 HOH A 33 435 33 HOH HOH . D 4 HOH A 34 436 34 HOH HOH . D 4 HOH A 35 437 35 HOH HOH . D 4 HOH A 36 438 36 HOH HOH . D 4 HOH A 37 439 37 HOH HOH . D 4 HOH A 38 440 38 HOH HOH . D 4 HOH A 39 441 39 HOH HOH . D 4 HOH A 40 442 40 HOH HOH . D 4 HOH A 41 443 41 HOH HOH . D 4 HOH A 42 444 42 HOH HOH . D 4 HOH A 43 445 43 HOH HOH . D 4 HOH A 44 446 44 HOH HOH . D 4 HOH A 45 447 45 HOH HOH . D 4 HOH A 46 448 46 HOH HOH . D 4 HOH A 47 449 47 HOH HOH . D 4 HOH A 48 450 49 HOH HOH . D 4 HOH A 49 451 50 HOH HOH . D 4 HOH A 50 452 51 HOH HOH . D 4 HOH A 51 453 52 HOH HOH . D 4 HOH A 52 454 53 HOH HOH . D 4 HOH A 53 455 54 HOH HOH . D 4 HOH A 54 456 55 HOH HOH . D 4 HOH A 55 457 56 HOH HOH . D 4 HOH A 56 458 57 HOH HOH . D 4 HOH A 57 459 58 HOH HOH . D 4 HOH A 58 460 59 HOH HOH . D 4 HOH A 59 461 60 HOH HOH . D 4 HOH A 60 462 61 HOH HOH . D 4 HOH A 61 463 62 HOH HOH . D 4 HOH A 62 464 63 HOH HOH . D 4 HOH A 63 465 64 HOH HOH . D 4 HOH A 64 466 65 HOH HOH . D 4 HOH A 65 467 66 HOH HOH . D 4 HOH A 66 468 67 HOH HOH . D 4 HOH A 67 469 68 HOH HOH . D 4 HOH A 68 470 69 HOH HOH . D 4 HOH A 69 471 71 HOH HOH . D 4 HOH A 70 472 72 HOH HOH . D 4 HOH A 71 473 73 HOH HOH . D 4 HOH A 72 474 74 HOH HOH . D 4 HOH A 73 475 75 HOH HOH . D 4 HOH A 74 476 76 HOH HOH . D 4 HOH A 75 477 77 HOH HOH . D 4 HOH A 76 478 78 HOH HOH . D 4 HOH A 77 479 79 HOH HOH . D 4 HOH A 78 480 80 HOH HOH . D 4 HOH A 79 481 82 HOH HOH . D 4 HOH A 80 482 83 HOH HOH . D 4 HOH A 81 483 84 HOH HOH . D 4 HOH A 82 484 85 HOH HOH . D 4 HOH A 83 485 86 HOH HOH . D 4 HOH A 84 486 87 HOH HOH . D 4 HOH A 85 487 88 HOH HOH . D 4 HOH A 86 488 89 HOH HOH . D 4 HOH A 87 489 90 HOH HOH . D 4 HOH A 88 490 91 HOH HOH . D 4 HOH A 89 491 92 HOH HOH . D 4 HOH A 90 492 93 HOH HOH . D 4 HOH A 91 493 94 HOH HOH . D 4 HOH A 92 494 95 HOH HOH . D 4 HOH A 93 495 97 HOH HOH . D 4 HOH A 94 496 98 HOH HOH . D 4 HOH A 95 497 99 HOH HOH . D 4 HOH A 96 498 100 HOH HOH . D 4 HOH A 97 499 101 HOH HOH . D 4 HOH A 98 500 102 HOH HOH . D 4 HOH A 99 501 103 HOH HOH . D 4 HOH A 100 502 104 HOH HOH . D 4 HOH A 101 503 105 HOH HOH . D 4 HOH A 102 504 106 HOH HOH . D 4 HOH A 103 505 107 HOH HOH . D 4 HOH A 104 506 108 HOH HOH . D 4 HOH A 105 507 109 HOH HOH . D 4 HOH A 106 508 110 HOH HOH . D 4 HOH A 107 509 111 HOH HOH . D 4 HOH A 108 510 112 HOH HOH . D 4 HOH A 109 511 113 HOH HOH . D 4 HOH A 110 512 114 HOH HOH . D 4 HOH A 111 513 115 HOH HOH . D 4 HOH A 112 514 116 HOH HOH . D 4 HOH A 113 515 117 HOH HOH . D 4 HOH A 114 516 120 HOH HOH . D 4 HOH A 115 517 121 HOH HOH . D 4 HOH A 116 518 122 HOH HOH . D 4 HOH A 117 519 123 HOH HOH . D 4 HOH A 118 520 124 HOH HOH . D 4 HOH A 119 521 125 HOH HOH . D 4 HOH A 120 522 126 HOH HOH . D 4 HOH A 121 523 127 HOH HOH . D 4 HOH A 122 524 128 HOH HOH . D 4 HOH A 123 525 130 HOH HOH . D 4 HOH A 124 526 131 HOH HOH . D 4 HOH A 125 527 132 HOH HOH . D 4 HOH A 126 528 133 HOH HOH . D 4 HOH A 127 529 134 HOH HOH . D 4 HOH A 128 530 135 HOH HOH . D 4 HOH A 129 531 136 HOH HOH . D 4 HOH A 130 532 137 HOH HOH . D 4 HOH A 131 533 138 HOH HOH . D 4 HOH A 132 534 139 HOH HOH . D 4 HOH A 133 535 140 HOH HOH . D 4 HOH A 134 536 141 HOH HOH . D 4 HOH A 135 537 142 HOH HOH . D 4 HOH A 136 538 143 HOH HOH . D 4 HOH A 137 539 144 HOH HOH . D 4 HOH A 138 540 145 HOH HOH . D 4 HOH A 139 541 146 HOH HOH . D 4 HOH A 140 542 147 HOH HOH . D 4 HOH A 141 543 148 HOH HOH . D 4 HOH A 142 544 149 HOH HOH . D 4 HOH A 143 545 150 HOH HOH . D 4 HOH A 144 546 151 HOH HOH . D 4 HOH A 145 547 152 HOH HOH . D 4 HOH A 146 548 153 HOH HOH . D 4 HOH A 147 549 154 HOH HOH . D 4 HOH A 148 550 155 HOH HOH . D 4 HOH A 149 551 156 HOH HOH . D 4 HOH A 150 552 157 HOH HOH . D 4 HOH A 151 553 158 HOH HOH . D 4 HOH A 152 554 159 HOH HOH . D 4 HOH A 153 555 160 HOH HOH . D 4 HOH A 154 556 161 HOH HOH . D 4 HOH A 155 557 162 HOH HOH . D 4 HOH A 156 558 163 HOH HOH . D 4 HOH A 157 559 164 HOH HOH . D 4 HOH A 158 560 165 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . C 3 5.295 -10.375 6.962 1 28.56 ? C1 BOG 402 A 1 HETATM 2 O O1 BOG . . . C 3 5.638 -9.371 7.915 1 27.73 ? O1 BOG 402 A 1 HETATM 3 C C2 BOG . . . C 3 5.996 -11.728 7.136 1 27.78 ? C2 BOG 402 A 1 HETATM 4 O O2 BOG . . . C 3 7.364 -11.557 6.904 1 30.17 ? O2 BOG 402 A 1 HETATM 5 C C3 BOG . . . C 3 5.425 -12.769 6.153 1 29.13 ? C3 BOG 402 A 1 HETATM 6 O O3 BOG . . . C 3 6.05 -14.058 6.366 1 27.25 ? O3 BOG 402 A 1 HETATM 7 C C4 BOG . . . C 3 3.876 -12.778 6.27 1 29.9 ? C4 BOG 402 A 1 HETATM 8 O O4 BOG . . . C 3 3.281 -13.626 5.299 1 33.02 ? O4 BOG 402 A 1 HETATM 9 C C5 BOG . . . C 3 3.382 -11.325 6.07 1 31.14 ? C5 BOG 402 A 1 HETATM 10 O O5 BOG . . . C 3 3.921 -10.674 7.215 1 29.2 ? O5 BOG 402 A 1 HETATM 11 C C6 BOG . . . C 3 1.925 -10.806 6.045 1 32.21 ? C6 BOG 402 A 1 HETATM 12 O O6 BOG . . . C 3 1.17 -11.468 7.023 1 32.37 ? O6 BOG 402 A 1 HETATM 13 C C1' BOG . . . C 3 5.139 -8.086 7.431 1 28.66 ? C1' BOG 402 A 1 HETATM 14 C C2' BOG . . . C 3 6.305 -7.245 6.884 1 28.43 ? C2' BOG 402 A 1 HETATM 15 C C3' BOG . . . C 3 5.908 -5.805 6.587 1 29.33 ? C3' BOG 402 A 1 HETATM 16 C C4' BOG . . . C 3 6.872 -5.226 5.541 1 30.06 ? C4' BOG 402 A 1 HETATM 17 C C5' BOG . . . C 3 6.663 -3.722 5.286 1 28.41 ? C5' BOG 402 A 1 HETATM 18 C C6' BOG . . . C 3 7.79 -3.252 4.341 1 32.14 ? C6' BOG 402 A 1 HETATM 19 C C7' BOG . . . C 3 7.765 -1.733 4.119 1 33.29 ? C7' BOG 402 A 1 HETATM 20 C C8' BOG . . . C 3 8.565 -1.299 2.875 1 33.49 ? C8' BOG 402 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #