data_3GD3
#
_model_server_result.job_id            WS7zbYx_4oLdrecOPs10_A 
_model_server_result.datetime_utc      '2024-11-16 05:04:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gd3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1611}' 
#
_entry.id    3GD3 
#
_exptl.entry_id    3GD3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3GD3 
_cell.length_a            75.05 
_cell.length_b            80.29 
_cell.length_c            419.64 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GD3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,K 1 1 
B,H,L 2 1 
C,I,M 3 1 
D,J,N 4 1 
E 5 1 
F 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     3GD3 
_atom_sites.fract_transf_matrix[1][1]    0.013324 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012455 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002383 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 FAD A 1 1611 1611 FAD FAD . 
H 3 FAD B 1 1611 1611 FAD FAD . 
I 3 FAD C 1 1611 1611 FAD FAD . 
J 3 FAD D 1 1611 1611 FAD FAD . 
K 4 HOH A 1 613 1 HOH HOH . 
K 4 HOH A 2 614 2 HOH HOH . 
K 4 HOH A 3 615 3 HOH HOH . 
K 4 HOH A 4 616 4 HOH HOH . 
K 4 HOH A 5 617 7 HOH HOH . 
K 4 HOH A 6 618 9 HOH HOH . 
K 4 HOH A 7 619 11 HOH HOH . 
K 4 HOH A 8 620 12 HOH HOH . 
K 4 HOH A 9 621 13 HOH HOH . 
K 4 HOH A 10 622 21 HOH HOH . 
K 4 HOH A 11 623 23 HOH HOH . 
K 4 HOH A 12 624 24 HOH HOH . 
K 4 HOH A 13 625 27 HOH HOH . 
L 4 HOH B 1 613 5 HOH HOH . 
L 4 HOH B 2 614 18 HOH HOH . 
L 4 HOH B 3 615 20 HOH HOH . 
M 4 HOH C 1 613 10 HOH HOH . 
M 4 HOH C 2 614 14 HOH HOH . 
M 4 HOH C 3 615 15 HOH HOH . 
M 4 HOH C 4 616 17 HOH HOH . 
M 4 HOH C 5 617 19 HOH HOH . 
M 4 HOH C 6 618 25 HOH HOH . 
M 4 HOH C 7 619 26 HOH HOH . 
N 4 HOH D 1 613 6 HOH HOH . 
N 4 HOH D 2 614 8 HOH HOH . 
N 4 HOH D 3 615 16 HOH HOH . 
N 4 HOH D 4 616 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . I 3 -41.099 -13.722 40.246 1 81.8 ? PA FAD 1611 C 1 
HETATM 2 O O1A FAD . . . I 3 -41.181 -15.05 39.526 1 82.49 ? O1A FAD 1611 C 1 
HETATM 3 O O2A FAD . . . I 3 -41.169 -13.656 41.76 1 80.07 ? O2A FAD 1611 C 1 
HETATM 4 O O5B FAD . . . I 3 -42.238 -12.75 39.661 1 80.1 ? O5B FAD 1611 C 1 
HETATM 5 C C5B FAD . . . I 3 -42.793 -12.996 38.382 1 78.49 ? C5B FAD 1611 C 1 
HETATM 6 C C4B FAD . . . I 3 -44.299 -12.824 38.443 1 78.19 ? C4B FAD 1611 C 1 
HETATM 7 O O4B FAD . . . I 3 -44.724 -12.091 37.294 1 78.62 ? O4B FAD 1611 C 1 
HETATM 8 C C3B FAD . . . I 3 -45.013 -14.163 38.405 1 78.23 ? C3B FAD 1611 C 1 
HETATM 9 O O3B FAD . . . I 3 -46.032 -14.174 39.411 1 78.67 ? O3B FAD 1611 C 1 
HETATM 10 C C2B FAD . . . I 3 -45.637 -14.226 37.028 1 78.42 ? C2B FAD 1611 C 1 
HETATM 11 O O2B FAD . . . I 3 -46.88 -14.936 37.015 1 79.17 ? O2B FAD 1611 C 1 
HETATM 12 C C1B FAD . . . I 3 -45.816 -12.76 36.668 1 78.24 ? C1B FAD 1611 C 1 
HETATM 13 N N9A FAD . . . I 3 -45.814 -12.564 35.201 1 77.86 ? N9A FAD 1611 C 1 
HETATM 14 C C8A FAD . . . I 3 -45.002 -13.157 34.31 1 78.38 ? C8A FAD 1611 C 1 
HETATM 15 N N7A FAD . . . I 3 -45.281 -12.758 33.041 1 78.49 ? N7A FAD 1611 C 1 
HETATM 16 C C5A FAD . . . I 3 -46.301 -11.887 33.105 1 77.95 ? C5A FAD 1611 C 1 
HETATM 17 C C6A FAD . . . I 3 -47.038 -11.147 32.188 1 77.87 ? C6A FAD 1611 C 1 
HETATM 18 N N6A FAD . . . I 3 -46.784 -11.203 30.863 1 78.33 ? N6A FAD 1611 C 1 
HETATM 19 N N1A FAD . . . I 3 -48.029 -10.351 32.637 1 78.09 ? N1A FAD 1611 C 1 
HETATM 20 C C2A FAD . . . I 3 -48.31 -10.262 33.952 1 78.38 ? C2A FAD 1611 C 1 
HETATM 21 N N3A FAD . . . I 3 -47.637 -10.957 34.889 1 78.42 ? N3A FAD 1611 C 1 
HETATM 22 C C4A FAD . . . I 3 -46.643 -11.771 34.536 1 77.86 ? C4A FAD 1611 C 1 
HETATM 23 N N1 FAD . . . I 3 -33.892 -16.902 46.288 1 77.51 ? N1 FAD 1611 C 1 
HETATM 24 C C2 FAD . . . I 3 -33.066 -16.766 47.36 1 77.85 ? C2 FAD 1611 C 1 
HETATM 25 O O2 FAD . . . I 3 -32.164 -15.884 47.364 1 77.75 ? O2 FAD 1611 C 1 
HETATM 26 N N3 FAD . . . I 3 -33.218 -17.586 48.437 1 77.93 ? N3 FAD 1611 C 1 
HETATM 27 C C4 FAD . . . I 3 -34.189 -18.539 48.462 1 77.94 ? C4 FAD 1611 C 1 
HETATM 28 O O4 FAD . . . I 3 -34.309 -19.273 49.471 1 77.88 ? O4 FAD 1611 C 1 
HETATM 29 C C4X FAD . . . I 3 -35.044 -18.69 47.368 1 77.61 ? C4X FAD 1611 C 1 
HETATM 30 N N5 FAD . . . I 3 -35.999 -19.642 47.399 1 77.71 ? N5 FAD 1611 C 1 
HETATM 31 C C5X FAD . . . I 3 -36.805 -19.77 46.344 1 77.56 ? C5X FAD 1611 C 1 
HETATM 32 C C6 FAD . . . I 3 -37.761 -20.548 46.109 1 77.49 ? C6 FAD 1611 C 1 
HETATM 33 C C7 FAD . . . I 3 -38.675 -20.964 45.348 1 77.56 ? C7 FAD 1611 C 1 
HETATM 34 C C7M FAD . . . I 3 -39.638 -22.078 45.636 1 77.72 ? C7M FAD 1611 C 1 
HETATM 35 C C8 FAD . . . I 3 -38.622 -20.204 44.183 1 77.63 ? C8 FAD 1611 C 1 
HETATM 36 C C8M FAD . . . I 3 -39.586 -20.443 43.055 1 77.67 ? C8M FAD 1611 C 1 
HETATM 37 C C9 FAD . . . I 3 -37.631 -19.188 44.086 1 77.73 ? C9 FAD 1611 C 1 
HETATM 38 C C9A FAD . . . I 3 -36.704 -18.926 45.134 1 77.79 ? C9A FAD 1611 C 1 
HETATM 39 N N10 FAD . . . I 3 -35.701 -17.934 45.127 1 77.69 ? N10 FAD 1611 C 1 
HETATM 40 C C10 FAD . . . I 3 -34.871 -17.834 46.266 1 77.24 ? C10 FAD 1611 C 1 
HETATM 41 C C1' FAD . . . I 3 -35.517 -17.042 43.973 1 78.09 ? C1' FAD 1611 C 1 
HETATM 42 C C2' FAD . . . I 3 -36.254 -15.71 44.163 1 79.38 ? C2' FAD 1611 C 1 
HETATM 43 O O2' FAD . . . I 3 -37.128 -15.768 45.297 1 79.46 ? O2' FAD 1611 C 1 
HETATM 44 C C3' FAD . . . I 3 -37.06 -15.363 42.922 1 79.79 ? C3' FAD 1611 C 1 
HETATM 45 O O3' FAD . . . I 3 -36.139 -15.267 41.836 1 79.06 ? O3' FAD 1611 C 1 
HETATM 46 C C4' FAD . . . I 3 -37.847 -14.059 43.102 1 81.01 ? C4' FAD 1611 C 1 
HETATM 47 O O4' FAD . . . I 3 -39.245 -14.36 43.24 1 82.23 ? O4' FAD 1611 C 1 
HETATM 48 C C5' FAD . . . I 3 -37.662 -13.1 41.928 1 80.89 ? C5' FAD 1611 C 1 
HETATM 49 O O5' FAD . . . I 3 -38.716 -12.139 41.841 1 79.67 ? O5' FAD 1611 C 1 
HETATM 50 P P FAD . . . I 3 -39.21 -11.663 40.389 1 79.31 ? P FAD 1611 C 1 
HETATM 51 O O1P FAD . . . I 3 -40.411 -10.774 40.564 1 80.78 ? O1P FAD 1611 C 1 
HETATM 52 O O2P FAD . . . I 3 -38.033 -11.18 39.584 1 79.19 ? O2P FAD 1611 C 1 
HETATM 53 O O3P FAD . . . I 3 -39.749 -13.022 39.718 1 80.84 ? O3P FAD 1611 C 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           85 
_model_server_stats.create_model_time_ms    101 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           53 
#