data_3GEB
#
_model_server_result.job_id            Fr8zJNRW9ItRzUmV4sgrYA 
_model_server_result.datetime_utc      '2025-07-03 23:03:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3geb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":703}' 
#
_entry.id    3GEB 
#
_exptl.entry_id    3GEB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3GEB 
_cell.length_a            183.612 
_cell.length_b            183.612 
_cell.length_c            120.15 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GEB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I 1 1 
B,F,J 2 1 
C,G,K 3 1 
D,H,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ASP 12 A ASP 276 1_555 E MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc2 A OD1 ASP 238 A ASP 502 1_555 E MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? 
metalc ? metalc3 B OD2 ASP 10 B ASP 274 1_555 F MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc4 D OD2 ASP 10 D ASP 274 1_555 H MG MG . D MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3GEB 
_atom_sites.fract_transf_matrix[1][1]    0.005446 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005446 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008323 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MG A 1 701 701 MG MG . 
F 2 MG B 1 702 702 MG MG . 
G 2 MG C 1 703 703 MG MG . 
H 2 MG D 1 704 704 MG MG . 
I 3 HOH A 1 1 1 HOH TIP . 
I 3 HOH A 2 5 5 HOH TIP . 
I 3 HOH A 3 7 7 HOH TIP . 
I 3 HOH A 4 21 21 HOH TIP . 
I 3 HOH A 5 24 24 HOH TIP . 
I 3 HOH A 6 26 26 HOH TIP . 
I 3 HOH A 7 28 28 HOH TIP . 
I 3 HOH A 8 30 30 HOH TIP . 
I 3 HOH A 9 45 45 HOH TIP . 
I 3 HOH A 10 46 46 HOH TIP . 
I 3 HOH A 11 56 56 HOH TIP . 
I 3 HOH A 12 62 62 HOH TIP . 
I 3 HOH A 13 63 63 HOH TIP . 
I 3 HOH A 14 66 66 HOH TIP . 
I 3 HOH A 15 68 68 HOH TIP . 
I 3 HOH A 16 78 78 HOH TIP . 
I 3 HOH A 17 88 88 HOH TIP . 
I 3 HOH A 18 89 89 HOH TIP . 
I 3 HOH A 19 98 98 HOH TIP . 
I 3 HOH A 20 105 105 HOH TIP . 
I 3 HOH A 21 134 134 HOH TIP . 
I 3 HOH A 22 170 170 HOH TIP . 
I 3 HOH A 23 171 171 HOH TIP . 
I 3 HOH A 24 183 183 HOH TIP . 
I 3 HOH A 25 188 188 HOH TIP . 
I 3 HOH A 26 203 203 HOH TIP . 
I 3 HOH A 27 225 225 HOH TIP . 
I 3 HOH A 28 248 248 HOH TIP . 
J 3 HOH B 1 2 2 HOH TIP . 
J 3 HOH B 2 25 25 HOH TIP . 
J 3 HOH B 3 41 41 HOH TIP . 
J 3 HOH B 4 48 48 HOH TIP . 
J 3 HOH B 5 52 52 HOH TIP . 
J 3 HOH B 6 61 61 HOH TIP . 
J 3 HOH B 7 65 65 HOH TIP . 
J 3 HOH B 8 75 75 HOH TIP . 
J 3 HOH B 9 103 103 HOH TIP . 
J 3 HOH B 10 118 118 HOH TIP . 
J 3 HOH B 11 123 123 HOH TIP . 
J 3 HOH B 12 206 206 HOH TIP . 
K 3 HOH C 1 9 9 HOH TIP . 
K 3 HOH C 2 12 12 HOH TIP . 
K 3 HOH C 3 16 16 HOH TIP . 
K 3 HOH C 4 37 37 HOH TIP . 
K 3 HOH C 5 40 40 HOH TIP . 
K 3 HOH C 6 44 44 HOH TIP . 
K 3 HOH C 7 55 55 HOH TIP . 
K 3 HOH C 8 59 59 HOH TIP . 
K 3 HOH C 9 90 90 HOH TIP . 
K 3 HOH C 10 115 115 HOH TIP . 
K 3 HOH C 11 116 116 HOH TIP . 
K 3 HOH C 12 161 161 HOH TIP . 
K 3 HOH C 13 222 222 HOH TIP . 
L 3 HOH D 1 3 3 HOH TIP . 
L 3 HOH D 2 17 17 HOH TIP . 
L 3 HOH D 3 22 22 HOH TIP . 
L 3 HOH D 4 23 23 HOH TIP . 
L 3 HOH D 5 27 27 HOH TIP . 
L 3 HOH D 6 29 29 HOH TIP . 
L 3 HOH D 7 31 31 HOH TIP . 
L 3 HOH D 8 33 33 HOH TIP . 
L 3 HOH D 9 36 36 HOH TIP . 
L 3 HOH D 10 53 53 HOH TIP . 
L 3 HOH D 11 67 67 HOH TIP . 
L 3 HOH D 12 69 69 HOH TIP . 
L 3 HOH D 13 76 76 HOH TIP . 
L 3 HOH D 14 87 87 HOH TIP . 
L 3 HOH D 15 93 93 HOH TIP . 
L 3 HOH D 16 95 95 HOH TIP . 
L 3 HOH D 17 106 106 HOH TIP . 
L 3 HOH D 18 111 111 HOH TIP . 
L 3 HOH D 19 127 127 HOH TIP . 
L 3 HOH D 20 164 164 HOH TIP . 
L 3 HOH D 21 179 179 HOH TIP . 
L 3 HOH D 22 191 191 HOH TIP . 
L 3 HOH D 23 199 199 HOH TIP . 
L 3 HOH D 24 202 202 HOH TIP . 
L 3 HOH D 25 204 204 HOH TIP . 
L 3 HOH D 26 213 213 HOH TIP . 
L 3 HOH D 27 215 215 HOH TIP . 
L 3 HOH D 28 217 217 HOH TIP . 
L 3 HOH D 29 223 223 HOH TIP . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               40.325 
_atom_site.Cartn_y               -7.895 
_atom_site.Cartn_z               -68.396 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        29.95 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           703 
_atom_site.auth_asym_id          C 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#