data_3GEE
#
_model_server_result.job_id            ioy-WDIboxyjAhBR8XadyQ 
_model_server_result.datetime_utc      '2024-12-22 06:09:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3gee 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":475}' 
#
_entry.id    3GEE 
#
_exptl.entry_id    3GEE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              473.439 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-{[4-({[(6R)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]carbonyl}-L-glutamic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3GEE 
_cell.length_a            130.804 
_cell.length_b            130.804 
_cell.length_c            200.611 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GEE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H23 N7 O7' 
_chem_comp.formula_weight    473.439 
_chem_comp.id                FON 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-{[4-({[(6R)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]carbonyl}-L-glutamic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '[6R]-5-FORMYL-5,6,7,8-TETRAHYDROFOLATE;6R-FOLINIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FON sing 83 n y 
N1 C8A FON sing 84 n y 
N1 HN1 FON sing 85 n n 
C2 NA2 FON sing 86 n n 
C2 N3 FON doub 87 n y 
NA2 HN21 FON sing 88 n n 
NA2 HN22 FON sing 89 n n 
N3 C4 FON sing 90 n y 
C4 O4 FON doub 91 n n 
C4 C4A FON sing 92 n y 
C4A N5 FON sing 93 n n 
C4A C8A FON doub 94 n y 
N5 C6 FON sing 95 n n 
N5 CP1 FON sing 96 n n 
C6 C7 FON sing 97 n n 
C6 C9 FON sing 98 n n 
C6 H61 FON sing 99 n n 
C7 N8 FON sing 100 n n 
C7 H7 FON sing 101 n n 
C7 HC72 FON sing 102 n n 
N8 C8A FON sing 103 n n 
N8 HN8 FON sing 104 n n 
C9 N10 FON sing 105 n n 
C9 H91 FON sing 106 n n 
C9 H92 FON sing 107 n n 
N10 C14 FON sing 108 n n 
N10 HN0 FON sing 109 n n 
C11 C12 FON doub 110 n y 
C11 C16 FON sing 111 n y 
C11 C FON sing 112 n n 
C12 C13 FON sing 113 n y 
C12 H12 FON sing 114 n n 
C13 C14 FON doub 115 n y 
C13 H13 FON sing 116 n n 
C14 C15 FON sing 117 n y 
C15 C16 FON doub 118 n y 
C15 H15 FON sing 119 n n 
C16 H16 FON sing 120 n n 
C O FON doub 121 n n 
C N FON sing 122 n n 
N CA FON sing 123 n n 
N HN FON sing 124 n n 
CA CB FON sing 125 n n 
CA CT FON sing 126 n n 
CA HA FON sing 127 n n 
CB CG FON sing 128 n n 
CB HB1 FON sing 129 n n 
CB HB2 FON sing 130 n n 
CG CD FON sing 131 n n 
CG HG1 FON sing 132 n n 
CG HG2 FON sing 133 n n 
CD OE1 FON doub 134 n n 
CD OE2 FON sing 135 n n 
OE2 HOE2 FON sing 136 n n 
CT O1 FON doub 137 n n 
CT O2 FON sing 138 n n 
O2 HO2 FON sing 139 n n 
CP1 O3 FON doub 140 n n 
CP1 HCP1 FON sing 141 n n 
#
_atom_sites.entry_id                     3GEE 
_atom_sites.fract_transf_matrix[1][1]    0.007645 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007645 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004985 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GDP A 1 474 474 GDP GDP . 
C 3 FON A 1 475 475 FON FON . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FON . . . C 3 -5.658 -1.693 38.191 1 99.14 ? N1 FON 475 A 1 
HETATM 2 C C2 FON . . . C 3 -4.808 -2.651 38.612 1 98.9 ? C2 FON 475 A 1 
HETATM 3 N NA2 FON . . . C 3 -3.578 -2.286 39.059 1 98.93 ? NA2 FON 475 A 1 
HETATM 4 N N3 FON . . . C 3 -5.141 -3.969 38.604 1 98.65 ? N3 FON 475 A 1 
HETATM 5 C C4 FON . . . C 3 -6.344 -4.409 38.175 1 98.73 ? C4 FON 475 A 1 
HETATM 6 O O4 FON . . . C 3 -6.585 -5.635 38.195 1 99.04 ? O4 FON 475 A 1 
HETATM 7 C C4A FON . . . C 3 -7.317 -3.389 37.684 1 98.96 ? C4A FON 475 A 1 
HETATM 8 N N5 FON . . . C 3 -8.623 -3.582 37.22 1 99.32 ? N5 FON 475 A 1 
HETATM 9 C C6 FON . . . C 3 -9.518 -2.525 37.726 1 100.19 ? C6 FON 475 A 1 
HETATM 10 C C7 FON . . . C 3 -9.104 -1.327 36.88 1 99.45 ? C7 FON 475 A 1 
HETATM 11 N N8 FON . . . C 3 -7.745 -1.007 37.295 1 99.38 ? N8 FON 475 A 1 
HETATM 12 C C8A FON . . . C 3 -6.887 -1.975 37.73 1 99.2 ? C8A FON 475 A 1 
HETATM 13 C C9 FON . . . C 3 -11.018 -2.825 37.659 1 102.2 ? C9 FON 475 A 1 
HETATM 14 N N10 FON . . . C 3 -11.361 -4.106 38.261 1 105.71 ? N10 FON 475 A 1 
HETATM 15 C C11 FON . . . C 3 -10.735 -5.52 42.14 1 106.63 ? C11 FON 475 A 1 
HETATM 16 C C12 FON . . . C 3 -12.013 -5.413 41.595 1 106.7 ? C12 FON 475 A 1 
HETATM 17 C C13 FON . . . C 3 -12.202 -4.936 40.299 1 106.71 ? C13 FON 475 A 1 
HETATM 18 C C14 FON . . . C 3 -11.112 -4.54 39.529 1 106.17 ? C14 FON 475 A 1 
HETATM 19 C C15 FON . . . C 3 -9.823 -4.662 40.07 1 105.96 ? C15 FON 475 A 1 
HETATM 20 C C16 FON . . . C 3 -9.631 -5.14 41.369 1 106.38 ? C16 FON 475 A 1 
HETATM 21 C C FON . . . C 3 -10.592 -6.048 43.546 1 106.55 ? C FON 475 A 1 
HETATM 22 O O FON . . . C 3 -9.497 -6.046 44.088 1 106.59 ? O FON 475 A 1 
HETATM 23 N N FON . . . C 3 -11.691 -6.525 44.146 1 107.05 ? N FON 475 A 1 
HETATM 24 C CA FON . . . C 3 -12.052 -6.419 45.557 1 107.42 ? CA FON 475 A 1 
HETATM 25 C CB FON . . . C 3 -12.304 -4.968 45.982 1 107.49 ? CB FON 475 A 1 
HETATM 26 C CG FON . . . C 3 -12.41 -4.771 47.498 1 107.78 ? CG FON 475 A 1 
HETATM 27 C CD FON . . . C 3 -11.782 -3.459 47.93 1 108.15 ? CD FON 475 A 1 
HETATM 28 O OE1 FON . . . C 3 -10.535 -3.404 48.048 1 108.39 ? OE1 FON 475 A 1 
HETATM 29 O OE2 FON . . . C 3 -12.526 -2.474 48.161 1 107.68 ? OE2 FON 475 A 1 
HETATM 30 C CT FON . . . C 3 -13.279 -7.252 45.822 1 107.49 ? CT FON 475 A 1 
HETATM 31 O O1 FON . . . C 3 -13.305 -8 46.828 1 107.64 ? O1 FON 475 A 1 
HETATM 32 O O2 FON . . . C 3 -14.235 -7.165 45.017 1 107.86 ? O2 FON 475 A 1 
HETATM 33 C CP1 FON . . . C 3 -8.949 -4.533 36.453 1 99.59 ? CP1 FON 475 A 1 
HETATM 34 O O3 FON . . . C 3 -9.38 -4.309 35.335 1 100.02 ? O3 FON 475 A 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           34 
#