data_3GEH # _model_server_result.job_id jasT0meSMQ7siUyODngHEA _model_server_result.datetime_utc '2024-12-21 14:08:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3geh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":461}' # _entry.id 3GEH # _exptl.entry_id 3GEH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 473.439 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-{[4-({[(6R)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]carbonyl}-L-glutamic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GEH _cell.length_a 124.279 _cell.length_b 124.279 _cell.length_c 174.701 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GEH _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 87.3505 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 352 A GLU 349 1_555 D ZN ZN . A ZN 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc2 B O3B GDP . A GDP 460 1_555 E ZN ZN . A ZN 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? # _chem_comp.formula 'C20 H23 N7 O7' _chem_comp.formula_weight 473.439 _chem_comp.id FON _chem_comp.mon_nstd_flag . _chem_comp.name 'N-{[4-({[(6R)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]carbonyl}-L-glutamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[6R]-5-FORMYL-5,6,7,8-TETRAHYDROFOLATE;6R-FOLINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FON sing 83 n y N1 C8A FON sing 84 n y N1 HN1 FON sing 85 n n C2 NA2 FON sing 86 n n C2 N3 FON doub 87 n y NA2 HN21 FON sing 88 n n NA2 HN22 FON sing 89 n n N3 C4 FON sing 90 n y C4 O4 FON doub 91 n n C4 C4A FON sing 92 n y C4A N5 FON sing 93 n n C4A C8A FON doub 94 n y N5 C6 FON sing 95 n n N5 CP1 FON sing 96 n n C6 C7 FON sing 97 n n C6 C9 FON sing 98 n n C6 H61 FON sing 99 n n C7 N8 FON sing 100 n n C7 H7 FON sing 101 n n C7 HC72 FON sing 102 n n N8 C8A FON sing 103 n n N8 HN8 FON sing 104 n n C9 N10 FON sing 105 n n C9 H91 FON sing 106 n n C9 H92 FON sing 107 n n N10 C14 FON sing 108 n n N10 HN0 FON sing 109 n n C11 C12 FON doub 110 n y C11 C16 FON sing 111 n y C11 C FON sing 112 n n C12 C13 FON sing 113 n y C12 H12 FON sing 114 n n C13 C14 FON doub 115 n y C13 H13 FON sing 116 n n C14 C15 FON sing 117 n y C15 C16 FON doub 118 n y C15 H15 FON sing 119 n n C16 H16 FON sing 120 n n C O FON doub 121 n n C N FON sing 122 n n N CA FON sing 123 n n N HN FON sing 124 n n CA CB FON sing 125 n n CA CT FON sing 126 n n CA HA FON sing 127 n n CB CG FON sing 128 n n CB HB1 FON sing 129 n n CB HB2 FON sing 130 n n CG CD FON sing 131 n n CG HG1 FON sing 132 n n CG HG2 FON sing 133 n n CD OE1 FON doub 134 n n CD OE2 FON sing 135 n n OE2 HOE2 FON sing 136 n n CT O1 FON doub 137 n n CT O2 FON sing 138 n n O2 HO2 FON sing 139 n n CP1 O3 FON doub 140 n n CP1 HCP1 FON sing 141 n n # _atom_sites.entry_id 3GEH _atom_sites.fract_transf_matrix[1][1] 0.008046 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008046 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005724 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP A 1 460 460 GDP GDP . C 3 FON A 1 461 461 FON FON . D 4 ZN A 1 462 462 ZN ZN . E 4 ZN A 1 463 463 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FON . . . C 3 -5.18 7.263 38.391 1 92.6 ? N1 FON 461 A 1 HETATM 2 C C2 FON . . . C 3 -4.376 7.719 39.373 1 92.62 ? C2 FON 461 A 1 HETATM 3 N NA2 FON . . . C 3 -4.506 7.208 40.616 1 92.87 ? NA2 FON 461 A 1 HETATM 4 N N3 FON . . . C 3 -3.433 8.677 39.18 1 92.59 ? N3 FON 461 A 1 HETATM 5 C C4 FON . . . C 3 -3.226 9.253 37.975 1 92.86 ? C4 FON 461 A 1 HETATM 6 O O4 FON . . . C 3 -2.353 10.138 37.808 1 92.64 ? O4 FON 461 A 1 HETATM 7 C C4A FON . . . C 3 -4.095 8.791 36.87 1 93.29 ? C4A FON 461 A 1 HETATM 8 N N5 FON . . . C 3 -4.045 9.221 35.553 1 94.14 ? N5 FON 461 A 1 HETATM 9 C C6 FON . . . C 3 -4.065 8.091 34.628 1 94.88 ? C6 FON 461 A 1 HETATM 10 C C7 FON . . . C 3 -5.512 7.576 34.71 1 93.8 ? C7 FON 461 A 1 HETATM 11 N N8 FON . . . C 3 -5.878 7.311 36.107 1 92.97 ? N8 FON 461 A 1 HETATM 12 C C8A FON . . . C 3 -5.095 7.739 37.14 1 93.04 ? C8A FON 461 A 1 HETATM 13 C C9 FON . . . C 3 -3.624 8.551 33.243 1 96.6 ? C9 FON 461 A 1 HETATM 14 N N10 FON . . . C 3 -2.976 7.45 32.561 1 99.25 ? N10 FON 461 A 1 HETATM 15 C C11 FON . . . C 3 0.982 6.169 32.886 1 100.04 ? C11 FON 461 A 1 HETATM 16 C C12 FON . . . C 3 0.528 6.817 31.735 1 99.91 ? C12 FON 461 A 1 HETATM 17 C C13 FON . . . C 3 -0.797 7.244 31.645 1 99.8 ? C13 FON 461 A 1 HETATM 18 C C14 FON . . . C 3 -1.687 7.047 32.701 1 99.6 ? C14 FON 461 A 1 HETATM 19 C C15 FON . . . C 3 -1.243 6.39 33.848 1 99.43 ? C15 FON 461 A 1 HETATM 20 C C16 FON . . . C 3 0.084 5.963 33.939 1 99.86 ? C16 FON 461 A 1 HETATM 21 C C FON . . . C 3 2.418 5.692 32.984 1 99.99 ? C FON 461 A 1 HETATM 22 O O FON . . . C 3 2.806 5.113 33.991 1 100.25 ? O FON 461 A 1 HETATM 23 N N FON . . . C 3 3.253 5.894 31.956 1 100.31 ? N FON 461 A 1 HETATM 24 C CA FON . . . C 3 3.868 4.859 31.128 1 100.41 ? CA FON 461 A 1 HETATM 25 C CB FON . . . C 3 3.038 3.576 31.018 1 100.55 ? CB FON 461 A 1 HETATM 26 C CG FON . . . C 3 3.579 2.468 31.923 1 101.13 ? CG FON 461 A 1 HETATM 27 C CD FON . . . C 3 3.87 1.176 31.178 1 101.92 ? CD FON 461 A 1 HETATM 28 O OE1 FON . . . C 3 4.09 0.148 31.86 1 102.04 ? OE1 FON 461 A 1 HETATM 29 O OE2 FON . . . C 3 3.89 1.158 29.924 1 102.1 ? OE2 FON 461 A 1 HETATM 30 C CT FON . . . C 3 4.119 5.402 29.751 1 100.36 ? CT FON 461 A 1 HETATM 31 O O1 FON . . . C 3 5.286 5.369 29.307 1 100.32 ? O1 FON 461 A 1 HETATM 32 O O2 FON . . . C 3 3.159 5.876 29.102 1 100.25 ? O2 FON 461 A 1 HETATM 33 C CP1 FON . . . C 3 -4.036 10.448 35.226 1 95.47 ? CP1 FON 461 A 1 HETATM 34 O O3 FON . . . C 3 -5.087 11.051 35.04 1 95.98 ? O3 FON 461 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 1314 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 34 #