data_3GF0 # _model_server_result.job_id J0ExmRTb_gNjMpDwV4OYng _model_server_result.datetime_utc '2024-10-12 21:20:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gf0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":277}' # _entry.id 3GF0 # _exptl.entry_id 3GF0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.959 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYROPHOSPHATE 2-' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GF0 _cell.length_a 171.569 _cell.length_b 171.569 _cell.length_c 171.569 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GF0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_656 -z+1,x,-y+1 0 0 -1 1 0 0 0 -1 0 171.569 0 171.569 3 'crystal symmetry operation' 11_566 y,-z+1,-x+1 0 1 0 0 0 -1 -1 0 0 0 171.569 171.569 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'H2 O7 P2 -2' _chem_comp.formula_weight 175.959 _chem_comp.id POP _chem_comp.mon_nstd_flag . _chem_comp.name 'PYROPHOSPHATE 2-' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 POP doub 260 n n P1 O2 POP sing 261 n n P1 O3 POP sing 262 n n P1 O POP sing 263 n n O2 HO2 POP sing 264 n n O P2 POP sing 265 n n P2 O4 POP doub 266 n n P2 O5 POP sing 267 n n P2 O6 POP sing 268 n n O5 HO5 POP sing 269 n n # _atom_sites.entry_id 3GF0 _atom_sites.fract_transf_matrix[1][1] 0.005829 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005829 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005829 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 205 205 MG MG . C 2 MG A 1 206 206 MG MG . D 2 MG A 1 207 207 MG MG . E 2 MG A 1 276 276 MG MG . F 3 POP A 1 277 277 POP POP . G 4 HOH A 1 278 278 HOH HOH . G 4 HOH A 2 279 279 HOH HOH . G 4 HOH A 3 280 280 HOH HOH . G 4 HOH A 4 281 281 HOH HOH . G 4 HOH A 5 282 282 HOH HOH . G 4 HOH A 6 283 283 HOH HOH . G 4 HOH A 7 284 284 HOH HOH . G 4 HOH A 8 285 285 HOH HOH . G 4 HOH A 9 286 286 HOH HOH . G 4 HOH A 10 287 287 HOH HOH . G 4 HOH A 11 288 288 HOH HOH . G 4 HOH A 12 289 289 HOH HOH . G 4 HOH A 13 290 290 HOH HOH . G 4 HOH A 14 291 291 HOH HOH . G 4 HOH A 15 292 292 HOH HOH . G 4 HOH A 16 293 293 HOH HOH . G 4 HOH A 17 294 294 HOH HOH . G 4 HOH A 18 295 295 HOH HOH . G 4 HOH A 19 296 296 HOH HOH . G 4 HOH A 20 297 297 HOH HOH . G 4 HOH A 21 298 298 HOH HOH . G 4 HOH A 22 299 299 HOH HOH . G 4 HOH A 23 300 300 HOH HOH . G 4 HOH A 24 301 301 HOH HOH . G 4 HOH A 25 302 302 HOH HOH . G 4 HOH A 26 303 303 HOH HOH . G 4 HOH A 27 304 304 HOH HOH . G 4 HOH A 28 305 305 HOH HOH . G 4 HOH A 29 306 306 HOH HOH . G 4 HOH A 30 307 307 HOH HOH . G 4 HOH A 31 308 308 HOH HOH . G 4 HOH A 32 309 309 HOH HOH . G 4 HOH A 33 310 310 HOH HOH . G 4 HOH A 34 311 311 HOH HOH . G 4 HOH A 35 312 312 HOH HOH . G 4 HOH A 36 313 313 HOH HOH . G 4 HOH A 37 314 314 HOH HOH . G 4 HOH A 38 315 315 HOH HOH . G 4 HOH A 39 316 316 HOH HOH . G 4 HOH A 40 317 317 HOH HOH . G 4 HOH A 41 318 318 HOH HOH . G 4 HOH A 42 319 319 HOH HOH . G 4 HOH A 43 320 320 HOH HOH . G 4 HOH A 44 321 321 HOH HOH . G 4 HOH A 45 322 322 HOH HOH . G 4 HOH A 46 323 323 HOH HOH . G 4 HOH A 47 324 324 HOH HOH . G 4 HOH A 48 325 325 HOH HOH . G 4 HOH A 49 326 326 HOH HOH . G 4 HOH A 50 327 327 HOH HOH . G 4 HOH A 51 328 328 HOH HOH . G 4 HOH A 52 329 329 HOH HOH . G 4 HOH A 53 330 330 HOH HOH . G 4 HOH A 54 331 331 HOH HOH . G 4 HOH A 55 332 332 HOH HOH . G 4 HOH A 56 333 333 HOH HOH . G 4 HOH A 57 334 334 HOH HOH . G 4 HOH A 58 335 335 HOH HOH . G 4 HOH A 59 336 336 HOH HOH . G 4 HOH A 60 337 337 HOH HOH . G 4 HOH A 61 338 338 HOH HOH . G 4 HOH A 62 339 339 HOH HOH . G 4 HOH A 63 340 340 HOH HOH . G 4 HOH A 64 341 341 HOH HOH . G 4 HOH A 65 342 342 HOH HOH . G 4 HOH A 66 343 343 HOH HOH . G 4 HOH A 67 344 344 HOH HOH . G 4 HOH A 68 345 345 HOH HOH . G 4 HOH A 69 346 346 HOH HOH . G 4 HOH A 70 347 347 HOH HOH . G 4 HOH A 71 348 348 HOH HOH . G 4 HOH A 72 349 349 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 POP . . . F 3 44.015 58.502 105.894 0.45 22.2 ? P1 POP 277 A 1 HETATM 2 O O1 POP . . . F 3 43.9 59.738 105.063 0.45 21.05 ? O1 POP 277 A 1 HETATM 3 O O2 POP . . . F 3 43.772 58.993 107.297 0.45 22.22 ? O2 POP 277 A 1 HETATM 4 O O3 POP . . . F 3 45.359 57.799 105.872 0.45 21.52 ? O3 POP 277 A 1 HETATM 5 O O POP . . . F 3 43.03 57.417 105.208 0.45 21.81 ? O POP 277 A 1 HETATM 6 P P2 POP . . . F 3 41.435 57.541 105.057 0.45 22.97 ? P2 POP 277 A 1 HETATM 7 O O4 POP . . . F 3 40.957 58.989 104.969 0.45 20.98 ? O4 POP 277 A 1 HETATM 8 O O5 POP . . . F 3 40.754 56.861 106.212 0.45 21.26 ? O5 POP 277 A 1 HETATM 9 O O6 POP . . . F 3 41.029 56.717 103.847 0.45 22.21 ? O6 POP 277 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #