data_3GF8 # _model_server_result.job_id ZbqBwQtpY3dsWfLeETUxSg _model_server_result.datetime_utc '2024-11-13 07:59:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gf8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3GF8 # _exptl.entry_id 3GF8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GF8 _cell.length_a 106.894 _cell.length_b 106.894 _cell.length_c 79.144 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GF8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 25 A ASN 46 1_555 A N MSE 26 A MSE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale2 A C MSE 26 A MSE 47 1_555 A N GLU 27 A GLU 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 A C LEU 67 A LEU 88 1_555 A N MSE 68 A MSE 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale4 A C MSE 68 A MSE 89 1_555 A N GLU 69 A GLU 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale5 A C PHE 79 A PHE 100 1_555 A N MSE 80 A MSE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C MSE 80 A MSE 101 1_555 A N ALA 81 A ALA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C ARG 119 A ARG 140 1_555 A N MSE 120 A MSE 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 A C MSE 120 A MSE 141 1_555 A N GLU 121 A GLU 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 A C ASP 166 A ASP 187 1_555 A N MSE 167 A MSE 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale10 A C MSE 167 A MSE 188 1_555 A N ASN 168 A ASN 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale11 A C TYR 199 A TYR 220 1_555 A N MSE 200 A MSE 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale12 A C MSE 200 A MSE 221 1_555 A N GLU 201 A GLU 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale13 A C ASP 211 A ASP 232 1_555 A N MSE 212 A MSE 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale14 A C MSE 212 A MSE 233 1_555 A N ASN 213 A ASN 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale15 A C THR 214 A THR 235 1_555 A N MSE 215 A MSE 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale16 A C MSE 215 A MSE 236 1_555 A N ARG 216 A ARG 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale17 A C LEU 217 A LEU 238 1_555 A N MSE 218 A MSE 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale18 A C MSE 218 A MSE 239 1_555 A N GLU 219 A GLU 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale19 A C ALA 246 A ALA 267 1_555 A N MSE 247 A MSE 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale20 A C MSE 247 A MSE 268 1_555 A N THR 248 A THR 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 3GF8 _atom_sites.fract_transf_matrix[1][1] 0.009355 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009355 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012635 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 1 1 EDO EDO . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 9 9 HOH HOH . C 3 HOH A 9 10 10 HOH HOH . C 3 HOH A 10 11 11 HOH HOH . C 3 HOH A 11 12 12 HOH HOH . C 3 HOH A 12 13 13 HOH HOH . C 3 HOH A 13 14 14 HOH HOH . C 3 HOH A 14 15 15 HOH HOH . C 3 HOH A 15 16 16 HOH HOH . C 3 HOH A 16 17 17 HOH HOH . C 3 HOH A 17 18 18 HOH HOH . C 3 HOH A 18 19 19 HOH HOH . C 3 HOH A 19 20 20 HOH HOH . C 3 HOH A 20 21 21 HOH HOH . C 3 HOH A 21 318 22 HOH HOH . C 3 HOH A 22 319 23 HOH HOH . C 3 HOH A 23 320 24 HOH HOH . C 3 HOH A 24 321 25 HOH HOH . C 3 HOH A 25 322 26 HOH HOH . C 3 HOH A 26 323 27 HOH HOH . C 3 HOH A 27 324 28 HOH HOH . C 3 HOH A 28 325 29 HOH HOH . C 3 HOH A 29 326 30 HOH HOH . C 3 HOH A 30 327 31 HOH HOH . C 3 HOH A 31 328 32 HOH HOH . C 3 HOH A 32 329 33 HOH HOH . C 3 HOH A 33 330 34 HOH HOH . C 3 HOH A 34 331 35 HOH HOH . C 3 HOH A 35 332 36 HOH HOH . C 3 HOH A 36 333 37 HOH HOH . C 3 HOH A 37 334 38 HOH HOH . C 3 HOH A 38 335 39 HOH HOH . C 3 HOH A 39 336 40 HOH HOH . C 3 HOH A 40 337 41 HOH HOH . C 3 HOH A 41 338 42 HOH HOH . C 3 HOH A 42 339 43 HOH HOH . C 3 HOH A 43 340 44 HOH HOH . C 3 HOH A 44 341 45 HOH HOH . C 3 HOH A 45 342 46 HOH HOH . C 3 HOH A 46 343 47 HOH HOH . C 3 HOH A 47 344 48 HOH HOH . C 3 HOH A 48 345 49 HOH HOH . C 3 HOH A 49 346 50 HOH HOH . C 3 HOH A 50 347 51 HOH HOH . C 3 HOH A 51 348 52 HOH HOH . C 3 HOH A 52 349 53 HOH HOH . C 3 HOH A 53 350 54 HOH HOH . C 3 HOH A 54 351 55 HOH HOH . C 3 HOH A 55 352 56 HOH HOH . C 3 HOH A 56 353 57 HOH HOH . C 3 HOH A 57 354 58 HOH HOH . C 3 HOH A 58 355 59 HOH HOH . C 3 HOH A 59 356 60 HOH HOH . C 3 HOH A 60 357 61 HOH HOH . C 3 HOH A 61 358 62 HOH HOH . C 3 HOH A 62 359 63 HOH HOH . C 3 HOH A 63 360 64 HOH HOH . C 3 HOH A 64 361 65 HOH HOH . C 3 HOH A 65 362 66 HOH HOH . C 3 HOH A 66 363 67 HOH HOH . C 3 HOH A 67 364 68 HOH HOH . C 3 HOH A 68 365 69 HOH HOH . C 3 HOH A 69 366 70 HOH HOH . C 3 HOH A 70 367 71 HOH HOH . C 3 HOH A 71 368 72 HOH HOH . C 3 HOH A 72 369 73 HOH HOH . C 3 HOH A 73 370 74 HOH HOH . C 3 HOH A 74 371 75 HOH HOH . C 3 HOH A 75 372 76 HOH HOH . C 3 HOH A 76 373 77 HOH HOH . C 3 HOH A 77 374 78 HOH HOH . C 3 HOH A 78 375 79 HOH HOH . C 3 HOH A 79 376 80 HOH HOH . C 3 HOH A 80 377 81 HOH HOH . C 3 HOH A 81 378 82 HOH HOH . C 3 HOH A 82 379 83 HOH HOH . C 3 HOH A 83 380 84 HOH HOH . C 3 HOH A 84 381 85 HOH HOH . C 3 HOH A 85 382 86 HOH HOH . C 3 HOH A 86 383 87 HOH HOH . C 3 HOH A 87 384 88 HOH HOH . C 3 HOH A 88 385 89 HOH HOH . C 3 HOH A 89 386 90 HOH HOH . C 3 HOH A 90 387 91 HOH HOH . C 3 HOH A 91 388 92 HOH HOH . C 3 HOH A 92 389 93 HOH HOH . C 3 HOH A 93 390 94 HOH HOH . C 3 HOH A 94 391 95 HOH HOH . C 3 HOH A 95 392 96 HOH HOH . C 3 HOH A 96 393 97 HOH HOH . C 3 HOH A 97 394 98 HOH HOH . C 3 HOH A 98 395 99 HOH HOH . C 3 HOH A 99 396 100 HOH HOH . C 3 HOH A 100 397 101 HOH HOH . C 3 HOH A 101 398 102 HOH HOH . C 3 HOH A 102 399 103 HOH HOH . C 3 HOH A 103 400 104 HOH HOH . C 3 HOH A 104 401 105 HOH HOH . C 3 HOH A 105 402 106 HOH HOH . C 3 HOH A 106 403 107 HOH HOH . C 3 HOH A 107 404 108 HOH HOH . C 3 HOH A 108 405 109 HOH HOH . C 3 HOH A 109 406 110 HOH HOH . C 3 HOH A 110 407 111 HOH HOH . C 3 HOH A 111 408 112 HOH HOH . C 3 HOH A 112 409 113 HOH HOH . C 3 HOH A 113 410 114 HOH HOH . C 3 HOH A 114 411 115 HOH HOH . C 3 HOH A 115 412 116 HOH HOH . C 3 HOH A 116 413 117 HOH HOH . C 3 HOH A 117 414 118 HOH HOH . C 3 HOH A 118 415 119 HOH HOH . C 3 HOH A 119 416 120 HOH HOH . C 3 HOH A 120 417 121 HOH HOH . C 3 HOH A 121 418 122 HOH HOH . C 3 HOH A 122 419 123 HOH HOH . C 3 HOH A 123 420 124 HOH HOH . C 3 HOH A 124 421 125 HOH HOH . C 3 HOH A 125 422 126 HOH HOH . C 3 HOH A 126 423 127 HOH HOH . C 3 HOH A 127 424 128 HOH HOH . C 3 HOH A 128 425 129 HOH HOH . C 3 HOH A 129 426 130 HOH HOH . C 3 HOH A 130 427 131 HOH HOH . C 3 HOH A 131 428 132 HOH HOH . C 3 HOH A 132 429 133 HOH HOH . C 3 HOH A 133 430 134 HOH HOH . C 3 HOH A 134 431 135 HOH HOH . C 3 HOH A 135 432 136 HOH HOH . C 3 HOH A 136 433 137 HOH HOH . C 3 HOH A 137 434 138 HOH HOH . C 3 HOH A 138 435 139 HOH HOH . C 3 HOH A 139 436 140 HOH HOH . C 3 HOH A 140 437 141 HOH HOH . C 3 HOH A 141 438 142 HOH HOH . C 3 HOH A 142 439 143 HOH HOH . C 3 HOH A 143 440 144 HOH HOH . C 3 HOH A 144 441 145 HOH HOH . C 3 HOH A 145 442 146 HOH HOH . C 3 HOH A 146 443 147 HOH HOH . C 3 HOH A 147 444 148 HOH HOH . C 3 HOH A 148 445 149 HOH HOH . C 3 HOH A 149 446 150 HOH HOH . C 3 HOH A 150 447 151 HOH HOH . C 3 HOH A 151 448 152 HOH HOH . C 3 HOH A 152 449 153 HOH HOH . C 3 HOH A 153 450 154 HOH HOH . C 3 HOH A 154 451 155 HOH HOH . C 3 HOH A 155 452 156 HOH HOH . C 3 HOH A 156 453 157 HOH HOH . C 3 HOH A 157 454 158 HOH HOH . C 3 HOH A 158 455 159 HOH HOH . C 3 HOH A 159 456 160 HOH HOH . C 3 HOH A 160 457 161 HOH HOH . C 3 HOH A 161 458 162 HOH HOH . C 3 HOH A 162 459 163 HOH HOH . C 3 HOH A 163 460 164 HOH HOH . C 3 HOH A 164 461 165 HOH HOH . C 3 HOH A 165 462 166 HOH HOH . C 3 HOH A 166 463 167 HOH HOH . C 3 HOH A 167 464 168 HOH HOH . C 3 HOH A 168 465 169 HOH HOH . C 3 HOH A 169 466 170 HOH HOH . C 3 HOH A 170 467 171 HOH HOH . C 3 HOH A 171 468 172 HOH HOH . C 3 HOH A 172 469 173 HOH HOH . C 3 HOH A 173 470 174 HOH HOH . C 3 HOH A 174 471 175 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 3.844 42.1 27.438 1 60.27 ? C1 EDO 1 A 1 HETATM 2 O O1 EDO . . . B 2 5.174 41.671 27.09 1 67.41 ? O1 EDO 1 A 1 HETATM 3 C C2 EDO . . . B 2 3.86 43.602 27.715 1 62.22 ? C2 EDO 1 A 1 HETATM 4 O O2 EDO . . . B 2 2.849 44.306 26.971 1 59.01 ? O2 EDO 1 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #