data_3GFT # _model_server_result.job_id 41Xn5Yu0ei1LAcnm7MyJqg _model_server_result.datetime_utc '2024-11-07 19:00:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gft # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":301}' # _entry.id 3GFT # _exptl.entry_id 3GFT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GFT _cell.length_a 63.535 _cell.length_b 118.275 _cell.length_c 156.836 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GFT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 PISA monomeric 1 software_defined_assembly 4 PISA monomeric 1 software_defined_assembly 5 PISA monomeric 1 software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G,H,I,U 1 1 B,J,K,V 2 1 C,L,M,W 3 1 D,N,O,X 4 1 E,P,Q,Y 5 1 F,R,S,T,Z 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id T _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 35 A SER 17 1_555 G MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc2 A OG1 THR 53 A THR 35 1_555 G MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc3 H O1B GNP . A GNP 201 1_555 G MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc4 H O2G GNP . A GNP 201 1_555 G MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc5 G MG MG . A MG 202 1_555 U O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc6 G MG MG . A MG 202 1_555 U O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc7 B OG SER 35 B SER 17 1_555 J MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc8 B OG1 THR 53 B THR 35 1_555 J MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc9 K O2G GNP . B GNP 201 1_555 J MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? metalc ? metalc10 K O1B GNP . B GNP 201 1_555 J MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc11 J MG MG . B MG 202 1_555 V O HOH . B HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc12 J MG MG . B MG 202 1_555 V O HOH . B HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc13 C OG SER 35 C SER 17 1_555 L MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc14 C OG1 THR 53 C THR 35 1_555 L MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc15 M O1B GNP . C GNP 201 1_555 L MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc16 M O2G GNP . C GNP 201 1_555 L MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc17 L MG MG . C MG 202 1_555 W O HOH . C HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc18 D OG SER 35 D SER 17 1_555 N MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc19 O O1B GNP . D GNP 201 1_555 N MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc20 O O2G GNP . D GNP 201 1_555 N MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc21 E OG SER 35 E SER 17 1_555 P MG MG . E MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc22 E OG1 THR 53 E THR 35 1_555 P MG MG . E MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc23 Q O2G GNP . E GNP 201 1_555 P MG MG . E MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? metalc ? metalc24 Q O1B GNP . E GNP 201 1_555 P MG MG . E MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc25 F OG SER 35 F SER 17 1_555 R MG MG . F MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc26 S O1B GNP . F GNP 201 1_555 R MG MG . F MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc27 S O2G GNP . F GNP 201 1_555 R MG MG . F MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? metalc ? metalc28 R MG MG . F MG 202 1_555 Z O HOH . F HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc29 R MG MG . F MG 202 1_555 Z O HOH . F HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 3GFT _atom_sites.fract_transf_matrix[1][1] 0.015739 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008455 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006376 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 MG A 1 202 202 MG MG . H 3 GNP A 1 201 201 GNP GNP . I 4 UNX A 1 170 1 UNX UNX . J 2 MG B 1 202 202 MG MG . K 3 GNP B 1 201 201 GNP GNP . L 2 MG C 1 202 202 MG MG . M 3 GNP C 1 201 201 GNP GNP . N 2 MG D 1 202 202 MG MG . O 3 GNP D 1 201 201 GNP GNP . P 2 MG E 1 202 202 MG MG . Q 3 GNP E 1 201 201 GNP GNP . R 2 MG F 1 202 202 MG MG . S 3 GNP F 1 201 201 GNP GNP . T 5 CIT F 1 301 301 CIT CIT . U 6 HOH A 1 401 401 HOH HOH . U 6 HOH A 2 402 402 HOH HOH . U 6 HOH A 3 410 410 HOH HOH . U 6 HOH A 4 411 411 HOH HOH . U 6 HOH A 5 413 413 HOH HOH . U 6 HOH A 6 414 414 HOH HOH . U 6 HOH A 7 415 415 HOH HOH . U 6 HOH A 8 416 416 HOH HOH . U 6 HOH A 9 417 417 HOH HOH . U 6 HOH A 10 423 423 HOH HOH . U 6 HOH A 11 424 424 HOH HOH . U 6 HOH A 12 430 430 HOH HOH . U 6 HOH A 13 432 432 HOH HOH . U 6 HOH A 14 433 433 HOH HOH . U 6 HOH A 15 435 435 HOH HOH . U 6 HOH A 16 437 437 HOH HOH . U 6 HOH A 17 444 444 HOH HOH . U 6 HOH A 18 445 445 HOH HOH . U 6 HOH A 19 448 448 HOH HOH . U 6 HOH A 20 450 450 HOH HOH . U 6 HOH A 21 453 453 HOH HOH . U 6 HOH A 22 458 458 HOH HOH . U 6 HOH A 23 463 463 HOH HOH . U 6 HOH A 24 477 477 HOH HOH . U 6 HOH A 25 480 480 HOH HOH . U 6 HOH A 26 481 481 HOH HOH . U 6 HOH A 27 483 483 HOH HOH . U 6 HOH A 28 493 493 HOH HOH . U 6 HOH A 29 496 496 HOH HOH . U 6 HOH A 30 499 499 HOH HOH . U 6 HOH A 31 500 500 HOH HOH . U 6 HOH A 32 501 501 HOH HOH . U 6 HOH A 33 521 521 HOH HOH . U 6 HOH A 34 524 524 HOH HOH . U 6 HOH A 35 527 527 HOH HOH . U 6 HOH A 36 532 532 HOH HOH . U 6 HOH A 37 541 541 HOH HOH . V 6 HOH B 1 403 403 HOH HOH . V 6 HOH B 2 404 404 HOH HOH . V 6 HOH B 3 418 418 HOH HOH . V 6 HOH B 4 419 419 HOH HOH . V 6 HOH B 5 422 422 HOH HOH . V 6 HOH B 6 425 425 HOH HOH . V 6 HOH B 7 434 434 HOH HOH . V 6 HOH B 8 436 436 HOH HOH . V 6 HOH B 9 438 438 HOH HOH . V 6 HOH B 10 449 449 HOH HOH . V 6 HOH B 11 452 452 HOH HOH . V 6 HOH B 12 456 456 HOH HOH . V 6 HOH B 13 461 461 HOH HOH . V 6 HOH B 14 473 473 HOH HOH . V 6 HOH B 15 474 474 HOH HOH . V 6 HOH B 16 476 476 HOH HOH . V 6 HOH B 17 478 478 HOH HOH . V 6 HOH B 18 487 487 HOH HOH . V 6 HOH B 19 489 489 HOH HOH . V 6 HOH B 20 497 497 HOH HOH . V 6 HOH B 21 498 498 HOH HOH . V 6 HOH B 22 502 502 HOH HOH . V 6 HOH B 23 505 505 HOH HOH . V 6 HOH B 24 509 509 HOH HOH . V 6 HOH B 25 511 511 HOH HOH . V 6 HOH B 26 515 515 HOH HOH . V 6 HOH B 27 516 516 HOH HOH . V 6 HOH B 28 517 517 HOH HOH . V 6 HOH B 29 518 518 HOH HOH . V 6 HOH B 30 519 519 HOH HOH . V 6 HOH B 31 525 525 HOH HOH . V 6 HOH B 32 529 529 HOH HOH . V 6 HOH B 33 531 531 HOH HOH . V 6 HOH B 34 535 535 HOH HOH . V 6 HOH B 35 538 538 HOH HOH . V 6 HOH B 36 540 540 HOH HOH . W 6 HOH C 1 405 405 HOH HOH . W 6 HOH C 2 427 427 HOH HOH . W 6 HOH C 3 428 428 HOH HOH . W 6 HOH C 4 429 429 HOH HOH . W 6 HOH C 5 440 440 HOH HOH . W 6 HOH C 6 451 451 HOH HOH . W 6 HOH C 7 454 454 HOH HOH . W 6 HOH C 8 465 465 HOH HOH . W 6 HOH C 9 470 470 HOH HOH . W 6 HOH C 10 482 482 HOH HOH . W 6 HOH C 11 490 490 HOH HOH . W 6 HOH C 12 491 491 HOH HOH . W 6 HOH C 13 507 507 HOH HOH . W 6 HOH C 14 522 522 HOH HOH . X 6 HOH D 1 412 412 HOH HOH . X 6 HOH D 2 457 457 HOH HOH . X 6 HOH D 3 462 462 HOH HOH . X 6 HOH D 4 469 469 HOH HOH . X 6 HOH D 5 479 479 HOH HOH . X 6 HOH D 6 486 486 HOH HOH . X 6 HOH D 7 495 495 HOH HOH . X 6 HOH D 8 503 503 HOH HOH . X 6 HOH D 9 508 508 HOH HOH . X 6 HOH D 10 512 512 HOH HOH . X 6 HOH D 11 530 530 HOH HOH . X 6 HOH D 12 542 542 HOH HOH . Y 6 HOH E 1 420 420 HOH HOH . Y 6 HOH E 2 426 426 HOH HOH . Y 6 HOH E 3 446 446 HOH HOH . Y 6 HOH E 4 447 447 HOH HOH . Y 6 HOH E 5 467 467 HOH HOH . Y 6 HOH E 6 468 468 HOH HOH . Y 6 HOH E 7 475 475 HOH HOH . Y 6 HOH E 8 492 492 HOH HOH . Y 6 HOH E 9 514 514 HOH HOH . Y 6 HOH E 10 528 528 HOH HOH . Y 6 HOH E 11 533 533 HOH HOH . Y 6 HOH E 12 537 537 HOH HOH . Y 6 HOH E 13 539 539 HOH HOH . Z 6 HOH F 1 406 406 HOH HOH . Z 6 HOH F 2 407 407 HOH HOH . Z 6 HOH F 3 408 408 HOH HOH . Z 6 HOH F 4 409 409 HOH HOH . Z 6 HOH F 5 421 421 HOH HOH . Z 6 HOH F 6 431 431 HOH HOH . Z 6 HOH F 7 439 439 HOH HOH . Z 6 HOH F 8 441 441 HOH HOH . Z 6 HOH F 9 442 442 HOH HOH . Z 6 HOH F 10 443 443 HOH HOH . Z 6 HOH F 11 455 455 HOH HOH . Z 6 HOH F 12 459 459 HOH HOH . Z 6 HOH F 13 460 460 HOH HOH . Z 6 HOH F 14 464 464 HOH HOH . Z 6 HOH F 15 466 466 HOH HOH . Z 6 HOH F 16 471 471 HOH HOH . Z 6 HOH F 17 472 472 HOH HOH . Z 6 HOH F 18 484 484 HOH HOH . Z 6 HOH F 19 485 485 HOH HOH . Z 6 HOH F 20 488 488 HOH HOH . Z 6 HOH F 21 494 494 HOH HOH . Z 6 HOH F 22 504 504 HOH HOH . Z 6 HOH F 23 506 506 HOH HOH . Z 6 HOH F 24 510 510 HOH HOH . Z 6 HOH F 25 513 513 HOH HOH . Z 6 HOH F 26 520 520 HOH HOH . Z 6 HOH F 27 523 523 HOH HOH . Z 6 HOH F 28 526 526 HOH HOH . Z 6 HOH F 29 534 534 HOH HOH . Z 6 HOH F 30 536 536 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . T 5 48.084 135.253 73.223 1 18.78 ? C1 CIT 301 F 1 HETATM 2 O O1 CIT . . . T 5 47.958 135.18 74.463 1 20.73 ? O1 CIT 301 F 1 HETATM 3 O O2 CIT . . . T 5 47.422 136.097 72.577 1 17.69 ? O2 CIT 301 F 1 HETATM 4 C C2 CIT . . . T 5 49.039 134.298 72.552 1 20.52 ? C2 CIT 301 F 1 HETATM 5 C C3 CIT . . . T 5 49.159 134.478 71.021 1 19.86 ? C3 CIT 301 F 1 HETATM 6 O O7 CIT . . . T 5 47.88 134.423 70.372 1 19.21 ? O7 CIT 301 F 1 HETATM 7 C C4 CIT . . . T 5 49.941 133.271 70.507 1 20.23 ? C4 CIT 301 F 1 HETATM 8 C C5 CIT . . . T 5 50.656 133.447 69.207 1 20.53 ? C5 CIT 301 F 1 HETATM 9 O O3 CIT . . . T 5 51.555 132.628 68.935 1 16.96 ? O3 CIT 301 F 1 HETATM 10 O O4 CIT . . . T 5 50.379 134.375 68.413 1 21.9 ? O4 CIT 301 F 1 HETATM 11 C C6 CIT . . . T 5 49.801 135.826 70.733 1 21.04 ? C6 CIT 301 F 1 HETATM 12 O O5 CIT . . . T 5 50.907 136.111 71.232 1 22.89 ? O5 CIT 301 F 1 HETATM 13 O O6 CIT . . . T 5 49.231 136.674 69.996 1 21 ? O6 CIT 301 F 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #