data_3GG1 # _model_server_result.job_id Gg1Gfe7o_igVseupoBOiKA _model_server_result.datetime_utc '2025-03-04 17:17:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gg1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":502}' # _entry.id 3GG1 # _exptl.entry_id 3GG1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GG1 _cell.length_a 68.85 _cell.length_b 96.69 _cell.length_c 127.04 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GG1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 196 A GLU 188 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc2 A OD1 ASN 247 A ASN 239 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc3 A OE2 GLU 280 A GLU 272 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc4 A OD2 ASP 310 A ASP 302 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc5 A OD1 ASP 310 A ASP 302 1_555 E CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? metalc ? metalc6 A OD1 ASP 311 A ASP 303 1_555 E CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc7 A OE1 GLU 367 A GLU 359 1_555 E CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc8 A OE2 GLU 367 A GLU 359 1_555 E CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc9 K O HOH . A HOH 406 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc10 C O2P C2E . A C2E 501 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc11 C O1P C2E . A C2E 501 1_555 E CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc12 B OE2 GLU 196 B GLU 188 1_555 H CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc13 B OD1 ASN 247 B ASN 239 1_555 H CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc14 B OE2 GLU 280 B GLU 272 1_555 H CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc15 B OD1 ASP 310 B ASP 302 1_555 H CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc16 B OD1 ASP 311 B ASP 303 1_555 I CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc17 B OD1 ASP 333 B ASP 325 1_555 I CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc18 B OE1 GLU 367 B GLU 359 1_555 I CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc19 L O HOH . B HOH 483 1_555 H CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc20 G O2P C2E . B C2E 501 1_555 H CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc21 G O1P C2E . B C2E 501 1_555 I CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3GG1 _atom_sites.fract_transf_matrix[1][1] 0.014524 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010342 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007872 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 C2E A 1 501 501 C2E CG2 . D 3 CA A 1 502 502 CA CA5 . E 3 CA A 1 503 503 CA CA5 . F 4 FMN A 1 504 504 FMN FMN . G 2 C2E B 1 501 501 C2E CG2 . H 3 CA B 1 502 502 CA CA5 . I 3 CA B 1 503 503 CA CA5 . J 4 FMN B 1 504 504 FMN FMN . K 5 HOH A 1 406 1 HOH HOH . K 5 HOH A 2 407 4 HOH HOH . K 5 HOH A 3 408 7 HOH HOH . K 5 HOH A 4 409 9 HOH HOH . K 5 HOH A 5 410 12 HOH HOH . K 5 HOH A 6 411 14 HOH HOH . K 5 HOH A 7 412 18 HOH HOH . K 5 HOH A 8 413 19 HOH HOH . K 5 HOH A 9 414 21 HOH HOH . K 5 HOH A 10 415 23 HOH HOH . K 5 HOH A 11 416 24 HOH HOH . K 5 HOH A 12 417 26 HOH HOH . K 5 HOH A 13 418 27 HOH HOH . K 5 HOH A 14 419 29 HOH HOH . K 5 HOH A 15 420 30 HOH HOH . K 5 HOH A 16 421 31 HOH HOH . K 5 HOH A 17 422 33 HOH HOH . K 5 HOH A 18 423 35 HOH HOH . K 5 HOH A 19 424 36 HOH HOH . K 5 HOH A 20 425 37 HOH HOH . K 5 HOH A 21 426 40 HOH HOH . K 5 HOH A 22 427 44 HOH HOH . K 5 HOH A 23 428 45 HOH HOH . K 5 HOH A 24 429 50 HOH HOH . K 5 HOH A 25 430 51 HOH HOH . K 5 HOH A 26 431 55 HOH HOH . K 5 HOH A 27 432 59 HOH HOH . K 5 HOH A 28 433 62 HOH HOH . K 5 HOH A 29 434 64 HOH HOH . K 5 HOH A 30 435 65 HOH HOH . K 5 HOH A 31 436 66 HOH HOH . K 5 HOH A 32 437 69 HOH HOH . K 5 HOH A 33 438 70 HOH HOH . K 5 HOH A 34 439 77 HOH HOH . K 5 HOH A 35 440 78 HOH HOH . K 5 HOH A 36 441 82 HOH HOH . K 5 HOH A 37 442 85 HOH HOH . K 5 HOH A 38 443 89 HOH HOH . K 5 HOH A 39 444 90 HOH HOH . K 5 HOH A 40 445 91 HOH HOH . K 5 HOH A 41 446 95 HOH HOH . K 5 HOH A 42 447 97 HOH HOH . K 5 HOH A 43 448 98 HOH HOH . K 5 HOH A 44 449 102 HOH HOH . K 5 HOH A 45 450 104 HOH HOH . K 5 HOH A 46 451 105 HOH HOH . K 5 HOH A 47 452 106 HOH HOH . K 5 HOH A 48 453 107 HOH HOH . K 5 HOH A 49 454 110 HOH HOH . K 5 HOH A 50 455 112 HOH HOH . K 5 HOH A 51 456 114 HOH HOH . K 5 HOH A 52 457 117 HOH HOH . K 5 HOH A 53 458 120 HOH HOH . K 5 HOH A 54 459 121 HOH HOH . K 5 HOH A 55 460 124 HOH HOH . K 5 HOH A 56 461 125 HOH HOH . K 5 HOH A 57 462 126 HOH HOH . K 5 HOH A 58 463 128 HOH HOH . K 5 HOH A 59 464 129 HOH HOH . K 5 HOH A 60 465 130 HOH HOH . K 5 HOH A 61 466 133 HOH HOH . K 5 HOH A 62 467 134 HOH HOH . K 5 HOH A 63 468 135 HOH HOH . K 5 HOH A 64 469 137 HOH HOH . K 5 HOH A 65 470 145 HOH HOH . K 5 HOH A 66 471 146 HOH HOH . K 5 HOH A 67 472 148 HOH HOH . K 5 HOH A 68 473 149 HOH HOH . K 5 HOH A 69 474 150 HOH HOH . K 5 HOH A 70 475 152 HOH HOH . K 5 HOH A 71 476 155 HOH HOH . K 5 HOH A 72 477 157 HOH HOH . K 5 HOH A 73 478 160 HOH HOH . K 5 HOH A 74 479 163 HOH HOH . K 5 HOH A 75 480 164 HOH HOH . K 5 HOH A 76 481 167 HOH HOH . K 5 HOH A 77 482 168 HOH HOH . K 5 HOH A 78 483 177 HOH HOH . K 5 HOH A 79 484 178 HOH HOH . K 5 HOH A 80 485 180 HOH HOH . K 5 HOH A 81 486 184 HOH HOH . K 5 HOH A 82 487 185 HOH HOH . K 5 HOH A 83 488 187 HOH HOH . K 5 HOH A 84 489 189 HOH HOH . K 5 HOH A 85 490 192 HOH HOH . K 5 HOH A 86 491 194 HOH HOH . K 5 HOH A 87 492 195 HOH HOH . K 5 HOH A 88 493 196 HOH HOH . K 5 HOH A 89 494 197 HOH HOH . K 5 HOH A 90 495 198 HOH HOH . K 5 HOH A 91 496 201 HOH HOH . K 5 HOH A 92 497 202 HOH HOH . K 5 HOH A 93 498 203 HOH HOH . L 5 HOH B 1 406 5 HOH HOH . L 5 HOH B 2 407 6 HOH HOH . L 5 HOH B 3 408 8 HOH HOH . L 5 HOH B 4 409 10 HOH HOH . L 5 HOH B 5 410 13 HOH HOH . L 5 HOH B 6 411 15 HOH HOH . L 5 HOH B 7 412 16 HOH HOH . L 5 HOH B 8 413 17 HOH HOH . L 5 HOH B 9 414 20 HOH HOH . L 5 HOH B 10 415 22 HOH HOH . L 5 HOH B 11 416 28 HOH HOH . L 5 HOH B 12 417 32 HOH HOH . L 5 HOH B 13 418 38 HOH HOH . L 5 HOH B 14 419 39 HOH HOH . L 5 HOH B 15 420 41 HOH HOH . L 5 HOH B 16 421 42 HOH HOH . L 5 HOH B 17 422 43 HOH HOH . L 5 HOH B 18 423 46 HOH HOH . L 5 HOH B 19 424 47 HOH HOH . L 5 HOH B 20 425 48 HOH HOH . L 5 HOH B 21 426 52 HOH HOH . L 5 HOH B 22 427 53 HOH HOH . L 5 HOH B 23 428 54 HOH HOH . L 5 HOH B 24 429 56 HOH HOH . L 5 HOH B 25 430 57 HOH HOH . L 5 HOH B 26 431 58 HOH HOH . L 5 HOH B 27 432 60 HOH HOH . L 5 HOH B 28 433 63 HOH HOH . L 5 HOH B 29 434 67 HOH HOH . L 5 HOH B 30 435 68 HOH HOH . L 5 HOH B 31 436 71 HOH HOH . L 5 HOH B 32 437 72 HOH HOH . L 5 HOH B 33 438 73 HOH HOH . L 5 HOH B 34 439 75 HOH HOH . L 5 HOH B 35 440 76 HOH HOH . L 5 HOH B 36 441 79 HOH HOH . L 5 HOH B 37 442 80 HOH HOH . L 5 HOH B 38 443 81 HOH HOH . L 5 HOH B 39 444 83 HOH HOH . L 5 HOH B 40 445 84 HOH HOH . L 5 HOH B 41 446 87 HOH HOH . L 5 HOH B 42 447 88 HOH HOH . L 5 HOH B 43 448 92 HOH HOH . L 5 HOH B 44 449 93 HOH HOH . L 5 HOH B 45 450 94 HOH HOH . L 5 HOH B 46 451 96 HOH HOH . L 5 HOH B 47 452 99 HOH HOH . L 5 HOH B 48 453 100 HOH HOH . L 5 HOH B 49 454 101 HOH HOH . L 5 HOH B 50 455 103 HOH HOH . L 5 HOH B 51 456 108 HOH HOH . L 5 HOH B 52 457 109 HOH HOH . L 5 HOH B 53 458 111 HOH HOH . L 5 HOH B 54 459 113 HOH HOH . L 5 HOH B 55 460 116 HOH HOH . L 5 HOH B 56 461 118 HOH HOH . L 5 HOH B 57 462 122 HOH HOH . L 5 HOH B 58 463 123 HOH HOH . L 5 HOH B 59 464 127 HOH HOH . L 5 HOH B 60 465 131 HOH HOH . L 5 HOH B 61 466 132 HOH HOH . L 5 HOH B 62 467 136 HOH HOH . L 5 HOH B 63 468 138 HOH HOH . L 5 HOH B 64 469 140 HOH HOH . L 5 HOH B 65 470 143 HOH HOH . L 5 HOH B 66 471 144 HOH HOH . L 5 HOH B 67 472 147 HOH HOH . L 5 HOH B 68 473 151 HOH HOH . L 5 HOH B 69 474 153 HOH HOH . L 5 HOH B 70 475 154 HOH HOH . L 5 HOH B 71 476 158 HOH HOH . L 5 HOH B 72 477 161 HOH HOH . L 5 HOH B 73 478 166 HOH HOH . L 5 HOH B 74 479 170 HOH HOH . L 5 HOH B 75 480 171 HOH HOH . L 5 HOH B 76 481 172 HOH HOH . L 5 HOH B 77 482 173 HOH HOH . L 5 HOH B 78 483 174 HOH HOH . L 5 HOH B 79 484 181 HOH HOH . L 5 HOH B 80 485 182 HOH HOH . L 5 HOH B 81 486 183 HOH HOH . L 5 HOH B 82 487 188 HOH HOH . L 5 HOH B 83 488 190 HOH HOH . L 5 HOH B 84 489 191 HOH HOH . L 5 HOH B 85 490 193 HOH HOH . L 5 HOH B 86 491 199 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x -6.039 _atom_site.Cartn_y 28.385 _atom_site.Cartn_z -6.582 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.86 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 502 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #