data_3GGA # _model_server_result.job_id kIycq84fO9lG6pe_Jmx_Cw _model_server_result.datetime_utc '2024-10-20 00:55:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gga # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":100}' # _entry.id 3GGA # _exptl.entry_id 3GGA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 703.867 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl [(1S,4S,5S,7S,10S)-4-benzyl-1,10-di-tert-butyl-5-hydroxy-2,9,12-trioxo-7-(4-pyridin-2-ylbenzyl)-13-oxa-3,8,11-triazatetradec-1-yl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.12 _cell.angle_gamma 90 _cell.entry_id 3GGA _cell.length_a 67.08 _cell.length_b 61.504 _cell.length_c 87.684 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GGA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I 1 1 C,D,J,K 2 1 E,F,L,M 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C39 H53 N5 O7' _chem_comp.formula_weight 703.867 _chem_comp.id GGW _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl [(1S,4S,5S,7S,10S)-4-benzyl-1,10-di-tert-butyl-5-hydroxy-2,9,12-trioxo-7-(4-pyridin-2-ylbenzyl)-13-oxa-3,8,11-triazatetradec-1-yl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O2 GGW sing 83 n n O2 C3 GGW sing 84 n n C3 O4 GGW doub 85 n n C3 N5 GGW sing 86 n n N5 C6 GGW sing 87 n n C6 C7 GGW sing 88 n n C6 C48 GGW sing 89 n n C7 O8 GGW doub 90 n n C7 N9 GGW sing 91 n n N9 C10 GGW sing 92 n n C10 C11 GGW sing 93 n n C10 C35 GGW sing 94 n n C11 C12 GGW sing 95 n n C12 O13 GGW sing 96 n n C12 C14 GGW sing 97 n n C14 C15 GGW sing 98 n n C14 N22 GGW sing 99 n n C15 C16 GGW sing 100 n n C16 C17 GGW doub 101 n y C16 C21 GGW sing 102 n y C17 C18 GGW sing 103 n y C18 C19 GGW doub 104 n y C19 C20 GGW sing 105 n y C20 C21 GGW doub 106 n y N22 C23 GGW sing 107 n n C23 O24 GGW doub 108 n n C23 C25 GGW sing 109 n n C25 N26 GGW sing 110 n n C25 C31 GGW sing 111 n n N26 C27 GGW sing 112 n n C27 O28 GGW doub 113 n n C27 O29 GGW sing 114 n n O29 C30 GGW sing 115 n n C31 C32 GGW sing 116 n n C31 C33 GGW sing 117 n n C31 C34 GGW sing 118 n n C35 C36 GGW sing 119 n n C36 C37 GGW doub 120 n y C36 C41 GGW sing 121 n y C37 C38 GGW sing 122 n y C38 C39 GGW doub 123 n y C39 C40 GGW sing 124 n y C39 C42 GGW sing 125 n y C40 C41 GGW doub 126 n y C42 C43 GGW doub 127 n y C42 N47 GGW sing 128 n y C43 C44 GGW sing 129 n y C44 C45 GGW doub 130 n y C45 C46 GGW sing 131 n y C46 N47 GGW doub 132 n y C48 C49 GGW sing 133 n n C48 C50 GGW sing 134 n n C48 C51 GGW sing 135 n n C1 H1 GGW sing 136 n n C1 H1A GGW sing 137 n n C1 H1B GGW sing 138 n n N5 HN5 GGW sing 139 n n C6 H6 GGW sing 140 n n N9 HN9 GGW sing 141 n n C10 H10 GGW sing 142 n n C11 H11 GGW sing 143 n n C11 H11A GGW sing 144 n n C12 H12 GGW sing 145 n n O13 HO13 GGW sing 146 n n C14 H14 GGW sing 147 n n C15 H15 GGW sing 148 n n C15 H15A GGW sing 149 n n C17 H17 GGW sing 150 n n C18 H18 GGW sing 151 n n C19 H19 GGW sing 152 n n C20 H20 GGW sing 153 n n C21 H21 GGW sing 154 n n N22 HN22 GGW sing 155 n n C25 H25 GGW sing 156 n n N26 HN26 GGW sing 157 n n C30 H30 GGW sing 158 n n C30 H30A GGW sing 159 n n C30 H30B GGW sing 160 n n C32 H32 GGW sing 161 n n C32 H32A GGW sing 162 n n C32 H32B GGW sing 163 n n C33 H33 GGW sing 164 n n C33 H33A GGW sing 165 n n C33 H33B GGW sing 166 n n C34 H34 GGW sing 167 n n C34 H34A GGW sing 168 n n C34 H34B GGW sing 169 n n C35 H35 GGW sing 170 n n C35 H35A GGW sing 171 n n C37 H37 GGW sing 172 n n C38 H38 GGW sing 173 n n C40 H40 GGW sing 174 n n C41 H41 GGW sing 175 n n C43 H43 GGW sing 176 n n C44 H44 GGW sing 177 n n C45 H45 GGW sing 178 n n C46 H46 GGW sing 179 n n C49 H49 GGW sing 180 n n C49 H49A GGW sing 181 n n C49 H49B GGW sing 182 n n C50 H50 GGW sing 183 n n C50 H50A GGW sing 184 n n C50 H50B GGW sing 185 n n C51 H51 GGW sing 186 n n C51 H51A GGW sing 187 n n C51 H51B GGW sing 188 n n # _atom_sites.entry_id 3GGA _atom_sites.fract_transf_matrix[1][1] 0.014908 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005759 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016259 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 GGW H 1 100 1 GGW GGW . H 3 HOH G 1 100 2 HOH HOH . H 3 HOH G 2 101 34 HOH HOH . H 3 HOH G 3 102 57 HOH HOH . H 3 HOH G 4 103 61 HOH HOH . H 3 HOH G 5 104 62 HOH HOH . H 3 HOH G 6 105 65 HOH HOH . H 3 HOH G 7 106 78 HOH HOH . H 3 HOH G 8 107 82 HOH HOH . I 3 HOH H 1 101 7 HOH HOH . I 3 HOH H 2 102 14 HOH HOH . I 3 HOH H 3 103 21 HOH HOH . I 3 HOH H 4 104 28 HOH HOH . I 3 HOH H 5 105 31 HOH HOH . I 3 HOH H 6 106 33 HOH HOH . I 3 HOH H 7 107 45 HOH HOH . I 3 HOH H 8 108 49 HOH HOH . I 3 HOH H 9 109 52 HOH HOH . I 3 HOH H 10 110 54 HOH HOH . I 3 HOH H 11 111 58 HOH HOH . I 3 HOH H 12 112 70 HOH HOH . J 3 HOH A 1 100 3 HOH HOH . J 3 HOH A 2 101 8 HOH HOH . J 3 HOH A 3 102 10 HOH HOH . J 3 HOH A 4 103 12 HOH HOH . J 3 HOH A 5 104 15 HOH HOH . J 3 HOH A 6 105 17 HOH HOH . J 3 HOH A 7 106 20 HOH HOH . J 3 HOH A 8 107 22 HOH HOH . J 3 HOH A 9 108 24 HOH HOH . J 3 HOH A 10 109 30 HOH HOH . J 3 HOH A 11 110 35 HOH HOH . J 3 HOH A 12 111 37 HOH HOH . J 3 HOH A 13 112 39 HOH HOH . J 3 HOH A 14 113 41 HOH HOH . J 3 HOH A 15 114 43 HOH HOH . J 3 HOH A 16 115 46 HOH HOH . J 3 HOH A 17 116 47 HOH HOH . J 3 HOH A 18 117 48 HOH HOH . J 3 HOH A 19 118 50 HOH HOH . J 3 HOH A 20 119 51 HOH HOH . J 3 HOH A 21 120 55 HOH HOH . J 3 HOH A 22 121 66 HOH HOH . J 3 HOH A 23 122 75 HOH HOH . J 3 HOH A 24 123 77 HOH HOH . K 3 HOH B 1 100 4 HOH HOH . K 3 HOH B 2 101 5 HOH HOH . K 3 HOH B 3 102 13 HOH HOH . K 3 HOH B 4 103 53 HOH HOH . K 3 HOH B 5 104 64 HOH HOH . K 3 HOH B 6 105 69 HOH HOH . K 3 HOH B 7 106 74 HOH HOH . K 3 HOH B 8 107 79 HOH HOH . L 3 HOH C 1 100 9 HOH HOH . L 3 HOH C 2 101 11 HOH HOH . L 3 HOH C 3 102 16 HOH HOH . L 3 HOH C 4 103 18 HOH HOH . L 3 HOH C 5 104 19 HOH HOH . L 3 HOH C 6 105 23 HOH HOH . L 3 HOH C 7 106 27 HOH HOH . L 3 HOH C 8 107 29 HOH HOH . L 3 HOH C 9 108 36 HOH HOH . L 3 HOH C 10 109 42 HOH HOH . L 3 HOH C 11 110 44 HOH HOH . L 3 HOH C 12 111 63 HOH HOH . L 3 HOH C 13 112 67 HOH HOH . L 3 HOH C 14 113 71 HOH HOH . L 3 HOH C 15 114 72 HOH HOH . L 3 HOH C 16 115 76 HOH HOH . L 3 HOH C 17 116 83 HOH HOH . M 3 HOH D 1 100 6 HOH HOH . M 3 HOH D 2 101 25 HOH HOH . M 3 HOH D 3 102 26 HOH HOH . M 3 HOH D 4 103 32 HOH HOH . M 3 HOH D 5 104 38 HOH HOH . M 3 HOH D 6 105 40 HOH HOH . M 3 HOH D 7 106 56 HOH HOH . M 3 HOH D 8 107 59 HOH HOH . M 3 HOH D 9 108 60 HOH HOH . M 3 HOH D 10 109 68 HOH HOH . M 3 HOH D 11 110 73 HOH HOH . M 3 HOH D 12 111 80 HOH HOH . M 3 HOH D 13 112 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GGW . . . G 2 28.26 10.198 4.288 1 21.4 ? C1 GGW 100 H 1 HETATM 2 O O2 GGW . . . G 2 27.9 9.667 3.018 1 23.59 ? O2 GGW 100 H 1 HETATM 3 C C3 GGW . . . G 2 27.34 8.428 3.12 1 23.95 ? C3 GGW 100 H 1 HETATM 4 O O4 GGW . . . G 2 27.216 7.793 4.162 1 25.15 ? O4 GGW 100 H 1 HETATM 5 N N5 GGW . . . G 2 26.928 7.98 1.893 1 23.35 ? N5 GGW 100 H 1 HETATM 6 C C6 GGW . . . G 2 26.431 6.624 1.817 1 23.93 ? C6 GGW 100 H 1 HETATM 7 C C7 GGW . . . G 2 27.333 5.998 0.787 1 23.68 ? C7 GGW 100 H 1 HETATM 8 O O8 GGW . . . G 2 27.269 6.237 -0.407 1 23.22 ? O8 GGW 100 H 1 HETATM 9 N N9 GGW . . . G 2 28.237 5.143 1.35 1 24.76 ? N9 GGW 100 H 1 HETATM 10 C C10 GGW . . . G 2 29.332 4.657 0.55 1 25.81 ? C10 GGW 100 H 1 HETATM 11 C C11 GGW . . . G 2 29.418 3.153 0.542 1 25 ? C11 GGW 100 H 1 HETATM 12 C C12 GGW . . . G 2 28.082 2.448 0.516 1 24.01 ? C12 GGW 100 H 1 HETATM 13 O O13 GGW . . . G 2 28.29 1.274 1.284 1 23.74 ? O13 GGW 100 H 1 HETATM 14 C C14 GGW . . . G 2 27.644 2.092 -0.9 1 23.06 ? C14 GGW 100 H 1 HETATM 15 C C15 GGW . . . G 2 26.265 1.447 -0.887 1 22.82 ? C15 GGW 100 H 1 HETATM 16 C C16 GGW . . . G 2 25.84 1.054 -2.271 1 23.27 ? C16 GGW 100 H 1 HETATM 17 C C17 GGW . . . G 2 25.295 1.982 -3.129 1 22.12 ? C17 GGW 100 H 1 HETATM 18 C C18 GGW . . . G 2 24.914 1.613 -4.401 1 22.39 ? C18 GGW 100 H 1 HETATM 19 C C19 GGW . . . G 2 25.07 0.312 -4.831 1 22.43 ? C19 GGW 100 H 1 HETATM 20 C C20 GGW . . . G 2 25.614 -0.621 -3.978 1 22.03 ? C20 GGW 100 H 1 HETATM 21 C C21 GGW . . . G 2 25.992 -0.249 -2.706 1 23.23 ? C21 GGW 100 H 1 HETATM 22 N N22 GGW . . . G 2 28.621 1.268 -1.587 1 21.86 ? N22 GGW 100 H 1 HETATM 23 C C23 GGW . . . G 2 29.137 1.627 -2.82 1 22.29 ? C23 GGW 100 H 1 HETATM 24 O O24 GGW . . . G 2 28.965 2.697 -3.397 1 23.07 ? O24 GGW 100 H 1 HETATM 25 C C25 GGW . . . G 2 29.978 0.51 -3.388 1 20.48 ? C25 GGW 100 H 1 HETATM 26 N N26 GGW . . . G 2 29.211 -0.009 -4.503 1 18.57 ? N26 GGW 100 H 1 HETATM 27 C C27 GGW . . . G 2 29.046 -1.365 -4.672 1 17.85 ? C27 GGW 100 H 1 HETATM 28 O O28 GGW . . . G 2 29.511 -2.234 -3.948 1 16.77 ? O28 GGW 100 H 1 HETATM 29 O O29 GGW . . . G 2 28.297 -1.622 -5.785 1 18.81 ? O29 GGW 100 H 1 HETATM 30 C C30 GGW . . . G 2 27.944 -3.002 -5.883 1 15.74 ? C30 GGW 100 H 1 HETATM 31 C C31 GGW . . . G 2 31.374 0.997 -3.768 1 19.72 ? C31 GGW 100 H 1 HETATM 32 C C32 GGW . . . G 2 31.985 1.784 -2.635 1 19.65 ? C32 GGW 100 H 1 HETATM 33 C C33 GGW . . . G 2 32.259 -0.203 -4.015 1 19.16 ? C33 GGW 100 H 1 HETATM 34 C C34 GGW . . . G 2 31.378 1.874 -4.997 1 20.37 ? C34 GGW 100 H 1 HETATM 35 C C35 GGW . . . G 2 30.656 5.159 1.062 1 27.89 ? C35 GGW 100 H 1 HETATM 36 C C36 GGW . . . G 2 30.8 6.631 0.882 1 29.38 ? C36 GGW 100 H 1 HETATM 37 C C37 GGW . . . G 2 30.722 7.445 1.985 1 29.18 ? C37 GGW 100 H 1 HETATM 38 C C38 GGW . . . G 2 30.856 8.807 1.849 1 31.1 ? C38 GGW 100 H 1 HETATM 39 C C39 GGW . . . G 2 31.074 9.396 0.621 1 31.51 ? C39 GGW 100 H 1 HETATM 40 C C40 GGW . . . G 2 31.156 8.566 -0.479 1 31.13 ? C40 GGW 100 H 1 HETATM 41 C C41 GGW . . . G 2 31.02 7.197 -0.358 1 30.32 ? C41 GGW 100 H 1 HETATM 42 C C42 GGW . . . G 2 31.209 10.844 0.509 1 34.21 ? C42 GGW 100 H 1 HETATM 43 C C43 GGW . . . G 2 30.632 11.536 -0.541 1 34.96 ? C43 GGW 100 H 1 HETATM 44 C C44 GGW . . . G 2 30.783 12.906 -0.624 1 35.23 ? C44 GGW 100 H 1 HETATM 45 C C45 GGW . . . G 2 31.512 13.549 0.352 1 35.54 ? C45 GGW 100 H 1 HETATM 46 C C46 GGW . . . G 2 32.049 12.784 1.365 1 35.69 ? C46 GGW 100 H 1 HETATM 47 N N47 GGW . . . G 2 31.92 11.455 1.475 1 35.1 ? N47 GGW 100 H 1 HETATM 48 C C48 GGW . . . G 2 24.947 6.592 1.449 1 23.79 ? C48 GGW 100 H 1 HETATM 49 C C49 GGW . . . G 2 24.629 7.463 0.245 1 23.33 ? C49 GGW 100 H 1 HETATM 50 C C50 GGW . . . G 2 24.477 5.179 1.187 1 23.31 ? C50 GGW 100 H 1 HETATM 51 C C51 GGW . . . G 2 24.147 7.089 2.628 1 23.25 ? C51 GGW 100 H 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 51 #