data_3GGC
#
_model_server_result.job_id            2oTPmT-uYFWlpTVBskkkiA 
_model_server_result.datetime_utc      '2025-07-05 13:15:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ggc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":218}' 
#
_entry.id    3GGC 
#
_exptl.entry_id    3GGC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              288.197 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '{2-[2-(6-oxo-1,6-dihydro-9H-purin-9-yl)ethoxy]ethyl}phosphonic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3GGC 
_cell.length_a            111.284 
_cell.length_b            72.775 
_cell.length_c            50.993 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3GGC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 72.775 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C9 H13 N4 O5 P' 
_chem_comp.formula_weight    288.197 
_chem_comp.id                H26 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '{2-[2-(6-oxo-1,6-dihydro-9H-purin-9-yl)ethoxy]ethyl}phosphonic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     9-(2-phosphonoethoxyethyl)hypoxanthine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAD PAT H26 doub 129 n n 
PAT OAE H26 sing 130 n n 
PAT OAC H26 sing 131 n n 
PAT CAJ H26 sing 132 n n 
CAJ CAH H26 sing 133 n n 
CAH OAN H26 sing 134 n n 
OAN CAG H26 sing 135 n n 
CAG CAI H26 sing 136 n n 
CAI N9 H26 sing 137 n n 
N9 C8 H26 sing 138 n y 
N9 C4 H26 sing 139 n y 
C8 N7 H26 doub 140 n y 
N7 C5 H26 sing 141 n y 
C4 C5 H26 doub 142 n y 
C4 N3 H26 sing 143 n n 
C5 C6 H26 sing 144 n n 
N3 C2 H26 doub 145 n n 
C2 N1 H26 sing 146 n n 
N1 C6 H26 sing 147 n n 
C6 O6 H26 doub 148 n n 
OAE HOAE H26 sing 149 n n 
OAC HOAC H26 sing 150 n n 
CAJ HAJ H26 sing 151 n n 
CAJ HAJA H26 sing 152 n n 
CAH HAH H26 sing 153 n n 
CAH HAHA H26 sing 154 n n 
CAG HAG H26 sing 155 n n 
CAG HAGA H26 sing 156 n n 
CAI HAI H26 sing 157 n n 
CAI HAIA H26 sing 158 n n 
C8 H8 H26 sing 159 n n 
C2 H2 H26 sing 160 n n 
N1 HN1 H26 sing 161 n n 
#
_atom_sites.entry_id                     3GGC 
_atom_sites.fract_transf_matrix[1][1]    0.008986 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013741 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019611 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 H26 A 1 218 2 H26 H26 . 
D 2 H26 B 1 218 1 H26 H26 . 
E 3 HOH A 1 219 1 HOH HOH . 
E 3 HOH A 2 220 2 HOH HOH . 
E 3 HOH A 3 223 5 HOH HOH . 
E 3 HOH A 4 224 6 HOH HOH . 
E 3 HOH A 5 225 7 HOH HOH . 
E 3 HOH A 6 230 12 HOH HOH . 
E 3 HOH A 7 231 13 HOH HOH . 
E 3 HOH A 8 232 14 HOH HOH . 
E 3 HOH A 9 233 15 HOH HOH . 
E 3 HOH A 10 238 20 HOH HOH . 
E 3 HOH A 11 240 22 HOH HOH . 
E 3 HOH A 12 242 24 HOH HOH . 
E 3 HOH A 13 243 25 HOH HOH . 
E 3 HOH A 14 244 26 HOH HOH . 
E 3 HOH A 15 245 27 HOH HOH . 
E 3 HOH A 16 246 28 HOH HOH . 
E 3 HOH A 17 247 29 HOH HOH . 
E 3 HOH A 18 248 30 HOH HOH . 
E 3 HOH A 19 249 31 HOH HOH . 
E 3 HOH A 20 251 33 HOH HOH . 
E 3 HOH A 21 252 34 HOH HOH . 
E 3 HOH A 22 253 35 HOH HOH . 
E 3 HOH A 23 254 36 HOH HOH . 
E 3 HOH A 24 256 38 HOH HOH . 
E 3 HOH A 25 257 39 HOH HOH . 
E 3 HOH A 26 258 40 HOH HOH . 
E 3 HOH A 27 259 41 HOH HOH . 
E 3 HOH A 28 261 43 HOH HOH . 
E 3 HOH A 29 263 45 HOH HOH . 
E 3 HOH A 30 265 47 HOH HOH . 
E 3 HOH A 31 269 51 HOH HOH . 
E 3 HOH A 32 270 52 HOH HOH . 
E 3 HOH A 33 272 54 HOH HOH . 
E 3 HOH A 34 274 57 HOH HOH . 
E 3 HOH A 35 276 59 HOH HOH . 
E 3 HOH A 36 279 62 HOH HOH . 
E 3 HOH A 37 280 63 HOH HOH . 
E 3 HOH A 38 281 64 HOH HOH . 
E 3 HOH A 39 282 65 HOH HOH . 
E 3 HOH A 40 283 66 HOH HOH . 
E 3 HOH A 41 284 67 HOH HOH . 
E 3 HOH A 42 285 68 HOH HOH . 
E 3 HOH A 43 289 72 HOH HOH . 
E 3 HOH A 44 290 73 HOH HOH . 
E 3 HOH A 45 291 74 HOH HOH . 
E 3 HOH A 46 293 76 HOH HOH . 
E 3 HOH A 47 294 77 HOH HOH . 
E 3 HOH A 48 295 78 HOH HOH . 
E 3 HOH A 49 299 82 HOH HOH . 
F 3 HOH B 1 221 3 HOH HOH . 
F 3 HOH B 2 222 4 HOH HOH . 
F 3 HOH B 3 226 8 HOH HOH . 
F 3 HOH B 4 227 9 HOH HOH . 
F 3 HOH B 5 228 10 HOH HOH . 
F 3 HOH B 6 229 11 HOH HOH . 
F 3 HOH B 7 234 16 HOH HOH . 
F 3 HOH B 8 235 17 HOH HOH . 
F 3 HOH B 9 236 18 HOH HOH . 
F 3 HOH B 10 237 19 HOH HOH . 
F 3 HOH B 11 239 21 HOH HOH . 
F 3 HOH B 12 241 23 HOH HOH . 
F 3 HOH B 13 250 32 HOH HOH . 
F 3 HOH B 14 255 37 HOH HOH . 
F 3 HOH B 15 260 42 HOH HOH . 
F 3 HOH B 16 262 44 HOH HOH . 
F 3 HOH B 17 264 46 HOH HOH . 
F 3 HOH B 18 266 48 HOH HOH . 
F 3 HOH B 19 267 49 HOH HOH . 
F 3 HOH B 20 268 50 HOH HOH . 
F 3 HOH B 21 271 53 HOH HOH . 
F 3 HOH B 22 273 55 HOH HOH . 
F 3 HOH B 23 275 58 HOH HOH . 
F 3 HOH B 24 277 60 HOH HOH . 
F 3 HOH B 25 278 61 HOH HOH . 
F 3 HOH B 26 286 69 HOH HOH . 
F 3 HOH B 27 287 70 HOH HOH . 
F 3 HOH B 28 288 71 HOH HOH . 
F 3 HOH B 29 292 75 HOH HOH . 
F 3 HOH B 30 296 79 HOH HOH . 
F 3 HOH B 31 297 80 HOH HOH . 
F 3 HOH B 32 298 81 HOH HOH . 
F 3 HOH B 33 300 83 HOH HOH . 
F 3 HOH B 34 301 84 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAD H26 . . . D 2 19.037 10.799 14.711 1 27.04 ? OAD H26 218 B 1 
HETATM 2 P PAT H26 . . . D 2 17.918 11.006 13.718 1 27.8 ? PAT H26 218 B 1 
HETATM 3 O OAE H26 . . . D 2 16.952 9.849 13.59 1 27.53 ? OAE H26 218 B 1 
HETATM 4 O OAC H26 . . . D 2 18.409 11.532 12.388 1 28.19 ? OAC H26 218 B 1 
HETATM 5 C CAJ H26 . . . D 2 16.91 12.352 14.397 1 26.81 ? CAJ H26 218 B 1 
HETATM 6 C CAH H26 . . . D 2 16.586 12.119 15.872 1 26.34 ? CAH H26 218 B 1 
HETATM 7 O OAN H26 . . . D 2 15.678 13.135 16.314 1 25.93 ? OAN H26 218 B 1 
HETATM 8 C CAG H26 . . . D 2 15.246 12.972 17.665 1 25.51 ? CAG H26 218 B 1 
HETATM 9 C CAI H26 . . . D 2 16.434 12.802 18.609 1 26.23 ? CAI H26 218 B 1 
HETATM 10 N N9 H26 . . . D 2 17.258 14.014 18.699 1 26.67 ? N9 H26 218 B 1 
HETATM 11 C C8 H26 . . . D 2 18.464 14.177 18.133 1 26.66 ? C8 H26 218 B 1 
HETATM 12 N N7 H26 . . . D 2 18.936 15.409 18.43 1 26.97 ? N7 H26 218 B 1 
HETATM 13 C C4 H26 . . . D 2 16.956 15.136 19.367 1 26.87 ? C4 H26 218 B 1 
HETATM 14 C C5 H26 . . . D 2 18.008 16.021 19.195 1 27.32 ? C5 H26 218 B 1 
HETATM 15 N N3 H26 . . . D 2 15.888 15.513 20.111 1 27.02 ? N3 H26 218 B 1 
HETATM 16 C C2 H26 . . . D 2 15.846 16.729 20.675 1 27.3 ? C2 H26 218 B 1 
HETATM 17 N N1 H26 . . . D 2 16.854 17.601 20.525 1 27.65 ? N1 H26 218 B 1 
HETATM 18 C C6 H26 . . . D 2 17.944 17.274 19.791 1 27.86 ? C6 H26 218 B 1 
HETATM 19 O O6 H26 . . . D 2 18.969 18.162 19.638 1 28.18 ? O6 H26 218 B 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           638 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           19 
#