data_3GGE # _model_server_result.job_id YmSd-sd_Nw-ocXQ-IFUB1Q _model_server_result.datetime_utc '2024-11-25 18:29:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3gge # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":3}' # _entry.id 3GGE # _exptl.entry_id 3GGE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3GGE _cell.length_a 83.51 _cell.length_b 83.51 _cell.length_c 160.31 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GGE _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/4 0 -1 0 -1 0 0 0 0 -1 83.51 83.51 40.0775 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 110 n n C1 C2 GOL sing 111 n n C1 H11 GOL sing 112 n n C1 H12 GOL sing 113 n n O1 HO1 GOL sing 114 n n C2 O2 GOL sing 115 n n C2 C3 GOL sing 116 n n C2 H2 GOL sing 117 n n O2 HO2 GOL sing 118 n n C3 O3 GOL sing 119 n n C3 H31 GOL sing 120 n n C3 H32 GOL sing 121 n n O3 HO3 GOL sing 122 n n # _atom_sites.entry_id 3GGE _atom_sites.fract_transf_matrix[1][1] 0.011975 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011975 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006238 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 B 1 1 1 SO4 SO4 . E 2 SO4 B 1 2 2 SO4 SO4 . F 3 GOL B 1 3 3 GOL GOL . G 4 HOH A 1 7 7 HOH HOH . G 4 HOH A 2 12 12 HOH HOH . G 4 HOH A 3 14 14 HOH HOH . G 4 HOH A 4 15 15 HOH HOH . G 4 HOH A 5 16 16 HOH HOH . G 4 HOH A 6 21 21 HOH HOH . G 4 HOH A 7 22 22 HOH HOH . G 4 HOH A 8 43 43 HOH HOH . G 4 HOH A 9 55 55 HOH HOH . G 4 HOH A 10 57 57 HOH HOH . G 4 HOH A 11 58 58 HOH HOH . G 4 HOH A 12 62 62 HOH HOH . G 4 HOH A 13 68 68 HOH HOH . G 4 HOH A 14 69 69 HOH HOH . G 4 HOH A 15 72 72 HOH HOH . G 4 HOH A 16 78 78 HOH HOH . G 4 HOH A 17 81 81 HOH HOH . G 4 HOH A 18 82 82 HOH HOH . G 4 HOH A 19 85 85 HOH HOH . G 4 HOH A 20 88 88 HOH HOH . G 4 HOH A 21 89 89 HOH HOH . G 4 HOH A 22 92 92 HOH HOH . G 4 HOH A 23 93 93 HOH HOH . G 4 HOH A 24 100 100 HOH HOH . H 4 HOH B 1 4 4 HOH HOH . H 4 HOH B 2 5 5 HOH HOH . H 4 HOH B 3 6 6 HOH HOH . H 4 HOH B 4 10 10 HOH HOH . H 4 HOH B 5 11 11 HOH HOH . H 4 HOH B 6 13 13 HOH HOH . H 4 HOH B 7 18 18 HOH HOH . H 4 HOH B 8 20 20 HOH HOH . H 4 HOH B 9 25 25 HOH HOH . H 4 HOH B 10 27 27 HOH HOH . H 4 HOH B 11 30 30 HOH HOH . H 4 HOH B 12 32 32 HOH HOH . H 4 HOH B 13 34 34 HOH HOH . H 4 HOH B 14 38 38 HOH HOH . H 4 HOH B 15 39 39 HOH HOH . H 4 HOH B 16 41 41 HOH HOH . H 4 HOH B 17 42 42 HOH HOH . H 4 HOH B 18 48 48 HOH HOH . H 4 HOH B 19 49 49 HOH HOH . H 4 HOH B 20 50 50 HOH HOH . H 4 HOH B 21 51 51 HOH HOH . H 4 HOH B 22 53 53 HOH HOH . H 4 HOH B 23 54 54 HOH HOH . H 4 HOH B 24 59 59 HOH HOH . H 4 HOH B 25 64 64 HOH HOH . H 4 HOH B 26 65 65 HOH HOH . H 4 HOH B 27 66 66 HOH HOH . H 4 HOH B 28 71 71 HOH HOH . H 4 HOH B 29 75 75 HOH HOH . H 4 HOH B 30 76 76 HOH HOH . H 4 HOH B 31 77 77 HOH HOH . H 4 HOH B 32 79 79 HOH HOH . H 4 HOH B 33 84 84 HOH HOH . H 4 HOH B 34 90 90 HOH HOH . H 4 HOH B 35 91 91 HOH HOH . H 4 HOH B 36 97 97 HOH HOH . H 4 HOH B 37 98 98 HOH HOH . I 4 HOH C 1 1 1 HOH HOH . I 4 HOH C 2 2 2 HOH HOH . I 4 HOH C 3 3 3 HOH HOH . I 4 HOH C 4 8 8 HOH HOH . I 4 HOH C 5 9 9 HOH HOH . I 4 HOH C 6 17 17 HOH HOH . I 4 HOH C 7 19 19 HOH HOH . I 4 HOH C 8 23 23 HOH HOH . I 4 HOH C 9 24 24 HOH HOH . I 4 HOH C 10 26 26 HOH HOH . I 4 HOH C 11 28 28 HOH HOH . I 4 HOH C 12 29 29 HOH HOH . I 4 HOH C 13 31 31 HOH HOH . I 4 HOH C 14 33 33 HOH HOH . I 4 HOH C 15 35 35 HOH HOH . I 4 HOH C 16 36 36 HOH HOH . I 4 HOH C 17 37 37 HOH HOH . I 4 HOH C 18 40 40 HOH HOH . I 4 HOH C 19 44 44 HOH HOH . I 4 HOH C 20 45 45 HOH HOH . I 4 HOH C 21 46 46 HOH HOH . I 4 HOH C 22 47 47 HOH HOH . I 4 HOH C 23 52 52 HOH HOH . I 4 HOH C 24 56 56 HOH HOH . I 4 HOH C 25 60 60 HOH HOH . I 4 HOH C 26 61 61 HOH HOH . I 4 HOH C 27 63 63 HOH HOH . I 4 HOH C 28 67 67 HOH HOH . I 4 HOH C 29 70 70 HOH HOH . I 4 HOH C 30 73 73 HOH HOH . I 4 HOH C 31 74 74 HOH HOH . I 4 HOH C 32 80 80 HOH HOH . I 4 HOH C 33 83 83 HOH HOH . I 4 HOH C 34 86 86 HOH HOH . I 4 HOH C 35 87 87 HOH HOH . I 4 HOH C 36 94 94 HOH HOH . I 4 HOH C 37 95 95 HOH HOH . I 4 HOH C 38 96 96 HOH HOH . I 4 HOH C 39 99 99 HOH HOH . I 4 HOH C 40 101 101 HOH HOH . I 4 HOH C 41 102 102 HOH HOH . I 4 HOH C 42 103 103 HOH HOH . I 4 HOH C 43 104 104 HOH HOH . I 4 HOH C 44 105 105 HOH HOH . I 4 HOH C 45 106 106 HOH HOH . I 4 HOH C 46 107 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 12.659 68.326 9.616 1 51.71 ? C1 GOL 3 B 1 HETATM 2 O O1 GOL . . . F 3 11.233 68.444 9.543 1 48.77 ? O1 GOL 3 B 1 HETATM 3 C C2 GOL . . . F 3 13.279 67.16 10.425 1 52.11 ? C2 GOL 3 B 1 HETATM 4 O O2 GOL . . . F 3 12.485 65.987 10.267 1 53.82 ? O2 GOL 3 B 1 HETATM 5 C C3 GOL . . . F 3 14.755 66.892 9.993 1 54.31 ? C3 GOL 3 B 1 HETATM 6 O O3 GOL . . . F 3 15.716 66.785 11.038 1 54.63 ? O3 GOL 3 B 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #